Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20americanum_20[genbank_20GCA_5F900188915.1_202017-07-22] 837 sequences; 9,013,692 total letters Query= NC_015288.1 Length=191195 Score E Sequences producing significant alignments: (Bits) Value seq83 621 4e-173 seq309 545 3e-150 >seq83 Length=41462 Score = 621 bits (688), Expect = 4e-173 Identities = 716/961 (75%), Gaps = 2/961 (0%) Strand=Plus/Plus Query 181821 AATCGTCTCTATGTCGGTTGGTTTGGTGTGCTGATGATCCCAACTCTGTTGGCGGCAACC 181880 || ||||| || | || ||||||||||| |||||||||| || | ||| ||||||| Sbjct 3527 AACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACGGCAACT 3586 Query 181881 ATCTGT-TTCATCGTTGCTTTCGTAGCAGCACCTCCTGTCGATATCGACGGTATCCGCGA 181939 ||||| || || |||| ||| | || || ||||| || || || || ||||| || || Sbjct 3587 -TCTGTATTTATTATTGCCTTCATTGCTGCTCCTCCAGTAGACATTGATGGTATTCGTGA 3645 Query 181940 ACCCGTAGCTGGTTCACTCATGTATGGTAACAACATCATCTCTGGTGCTGTTGTCCCATC 181999 ||| || | || || || | || || ||||| || || || ||||| || | || | Sbjct 3646 ACCTGTTTCAGGGTCTCTACTTTACGGAAACAATATTATTTCCGGTGCCATTATTCCTAC 3705 Query 182000 CTCCAACGCAATTGGTCTTCACTTCTACCCAATCTGGGAAGCTGCCTCACTTGATGAGTG 182059 || || || ||| | || || ||||||||||||||||| || || ||||||| || Sbjct 3706 TTCTGCAGCTATAGGTTTACATTTTTACCCAATCTGGGAAGCGGCATCCGTTGATGAATG 3765 Query 182060 GCTGTATAACGGTGGTCCTTTCCAACTGGTTGTTTTCCACTTCCTGATCGGCATCTACGC 182119 | | || ||||||||||||| |||| ||||| | |||||| | | ||| | Sbjct 3766 GTTATACAACGGTGGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGGCGTAGCTTG 3825 Query 182120 CTACATGGGACGTGAGTGGGAACTTTCTTACCGCTTAGGTATGCGTCCCTGGATCTGTGT 182179 |||||||| ||||||||||| ||| | ||| | |||||||| || ||||| ||| Sbjct 3826 TTACATGGGTCGTGAGTGGGAGCTTAGCTTCCGTCTGGGTATGCGACCTTGGATTGCTGT 3885 Query 182180 AGCATACTCTGCTCCAGTCGCTGCAGCATCTGCTGTATTCTTAGTCTATCCTTTCGGTCA 182239 ||||| || ||||| || || || || | || || ||||| |||| || ||||||| Sbjct 3886 TGCATATTCAGCTCCTGTTGCAGCTGCTACCGCAGTTTTCTTGATCTACCCAATCGGTCA 3945 Query 182240 AGGTTCGTTCTCCGATGCAATGCCCCTCGGAATCTCAGGAACATTCAACTATATGTTGGT 182299 ||| || || |||| ||||| || |||||||| || || ||||| | ||| | || Sbjct 3946 AGGAAGTTTTTCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAATTTCATGATTGT 4005 Query 182300 TTTCCAAGCTGAGCACAACATTCTTATGCATCCCTTCCACATGTTGGGTGTAGCAGGTGT 182359 ||||| |||||||||||||| |||||||| || || |||||||| || || || ||||| Sbjct 4006 ATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCACATGTTAGGCGTGGCTGGTGT 4065 Query 182360 ATTCGGTGGTTCACTGTTTAGTGCAATGCACGGTTCTTTGGTTACATCTTCACTCGTCCG 182419 |||||| || || || || ||||| ||||| ||||| ||||| || ||| | || | Sbjct 4066 ATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACTTCTAGTTTGATCAG 4125 Query 182420 TGAGACGACTGAGCAAGAGTCACAGAACTATGGTTACAAGTTCGGTCAAGAAGAAGAGAC 182479 || || || || | || || || | ||||||| ||||||||||| ||||| || Sbjct 4126 GGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAAC 4185 Query 182480 CTATAACATCGTTGCAGCCCATGGCTACTTCGGTCGTTTGATCTTCCAATACGCATCATT 182539 ||||| ||||| || || ||||| || || || || |||||||||||||| || || Sbjct 4186 TTATAATATCGTAGCCGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTT 4245 Query 182540 CAACAACTCCCGTTCCTTGCACTTCTTCCTTGCTGCATGGCCTGTTGTTGGAATCTGGTT 182599 ||||||||| ||||| || ||||||||||| ||||| |||||||| || || |||||||| Sbjct 4246 CAACAACTCTCGTTCGTTACACTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATCTGGTT 4305 Query 182600 CACCGCACTTGGTGTCTCCACGATGGCATTCAACCTCAACGGTTTCAACTTCAACCAGTC 182659 ||||| | ||| | ||| ||||| |||||||| || |||||||| |||||||| || Sbjct 4306 TACCGCTTTAGGTATTAGCACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATC 4365 Query 182660 CATCCTTGATGGTCAGGGTCGTGTCCTTAACACTTGGGCAGATGTATTGAACCGTGCTGG 182719 | |||| ||||||||||||| ||||||||||||| ||| | | ||||||||| Sbjct 4366 TGTAGTTGACAGTCAGGGTCGTGTAATTAACACTTGGGCTGATATCATCAACCGTGCTAA 4425 Query 182720 TCTTGGTATGGAAGTTATGCATGAGCGTAACGCACACAACTTCCCACTAGATCTTGCTGC 182779 ||||||||||||||||||||||| ||||| || || |||||||| ||||| || ||||| Sbjct 4426 CCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAACTTCCCTCTAGACCTAGCTGC 4485 Query 182780 T 182780 | Sbjct 4486 T 4486 >seq309 Length=37764 Score = 545 bits (604), Expect = 3e-150 Identities = 731/1011 (72%), Gaps = 6/1011 (1%) Strand=Plus/Plus Query 183193 GATGACTGGGTTAAACGCGATCGCTTTGTCTTTGTGGGCTGGTCTGGACTCCTACTTCTT 183252 ||||||||| | | || || || || ||||| |||||||| || || | || || Sbjct 23130 GATGACTGGTTACGGAGGGACCGTTTCGTTTTTGTAGGCTGGTCCGGTCTATTGCTCTTT 23189 Query 183253 CCCACTGCTTATCTTGCCATTGGCGGTTGGCTTACTGGCACAGCTTTTGTTACGAGTTGG 183312 || ||| ||| | || | || |||||| | || || ||| | ||||| || ||| Sbjct 23190 CCTTGTGCCTATTTCGCTGTAGGGGGTTGGTTCACAGGTACAACCTTTGTAACTTCATGG 23249 Query 183313 TATACCCATGGACTTGCTTCTTCCTATCTTGAAGG-TGCTAACTTTCTTA-CGGCAGCTG 183370 |||||||||||| | || ||| ||| | ||||| ||| | ||||||| | || || | Sbjct 23250 TATACCCATGGATTGGCCAGTTCTTATTTGGAAGGCTGCAA--TTTCTTAACTGCCGCGG 23307 Query 183371 TCTCGACGCCTGCTGACGCTATGGGTCATTCTCTTCTGTTACTTTGGGGTCCTGAGTCTC 183430 | || || |||||| | | | | ||||| | ||||||| ||||| ||||| | | Sbjct 23308 TTTCTACTCCTGCTAATAGTTTAGCACATTCGTTATTGTTACTATGGGGGCCTGAAGCAC 23367 Query 183431 AAGGGGACTTTCAACGCTGGTGCCAACTTGGGGGACTCTGGAATTTTGTGGCACTCCACG 183490 |||| || ||| || ||||| ||| | ||||| || |||| |||||| || ||||| | Sbjct 23368 AAGGAGATTTTACTCGTTGGTGTCAATTGGGGGGTCTGTGGACTTTTGTTGCTCTCCATG 23427 Query 183491 GTGCCTTTGCTCTCATTGG-TTTCATGCTTCGACAGTTTGAACTTGCTCGCTTGATTGGT 183549 | || |||| || || || ||| ||| | || || || || |||||||| | || Sbjct 23428 GAGCTTTTGGCCTAATAGGNTTTTATGTTACGTCAATTCGAGCTTGCTCGATCTGTTCAA 23487 Query 183550 ATCCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTTGTCAGTGTATTC 183609 | | ||||| ||||| || || ||||||||||| |||||||||||||| |||||| Sbjct 23488 TTGAGACCTTATAATGCAATCGCATTCTCTGGTCCAATTGCTGTTTTTGTTTCTGTATTT 23547 Query 183610 CTTATCTATCCACTGGGTCAGTCTTCATGGTTCTTTGCACCTAGTTTCGGGGTAGCAGCA 183669 || || |||||||| ||||||||| |||||||||||||||||||| || |||||||| Sbjct 23548 CTGATTTATCCACTAGGTCAGTCTGGTTGGTTCTTTGCACCTAGTTTTGGTGTAGCAGCT 23607 Query 183670 ATCTTTAGATTCCTATTGTTCCTTCAGGGTTTCCACAACTGGACGTTAAACCCCTTCCAT 183729 || ||| ||||| | | || |||| || || || || ||||| || |||||||| ||| Sbjct 23608 ATATTTCGATTCATCCTATTTTTTCAAGGGTTTCATAATTGGACCTTGAACCCCTTTCAT 23667 Query 183730 ATGATGGGAGTTGCTGGTATACTAGGAGGAGCACTACTCAGTGCTATCCATGGTGTCACA 183789 |||||||||||||| ||| || | || | || | || | || || ||||||| || Sbjct 23668 ATGATGGGAGTTGCCGGTGTATTGGGCGCTGCTTTGCTATGCGCCATTCATGGTGCTACC 23727 Query 183790 GTAGAGAATACATTGTATGAAGATGGAGAACAAGCAAACACATTCAAGGCATTTGATTCC 183849 ||||| ||||| || | |||||| || || ||||| |||||| || ||| | | Sbjct 23728 GTAGAAAATACTTTATTTGAAGACGGTGATGGTGCAAATACATTCCGTGCTTTTAACCCA 23787 Query 183850 ACTCAAGAAGAAGAGACGTATTCTATGGTTACAGCGAATCGTTTCTGGTCACAAATCTTC 183909 ||||||| ||||| || ||||| ||||| || || || || || ||||| |||||||| Sbjct 23788 ACTCAAGCCGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCCCAAATCTTT 23847 Query 183910 GGGGTTGCGTTTAGCAATAAGCGTTGGTTGCACTTCTTTATGTTGTTTGTTCCTGTCATG 183969 |||||||| ||| |||||| |||||||| || ||||||||||| ||||| || || | Sbjct 23848 GGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACC 23907 Query 183970 GGTCTTTGGGTCTCTTCTATTGGCATCATTGGGCTTGCTCTTAATCTTCGTGCTTATGA- 184028 ||| | ||| | | || |||| | | || || ||||| || || ||||| ||||| Sbjct 23908 GGTTTATGGATGAGTGCTCTTGGAGTAGTCGGTCTAGCTCTGAACCTACGTGCCTATGAC 23967 Query 184029 TTTTGTAAGTCAAGAGATCAGAGCAGCAGAAGATCCAGAATTTGAGACGTTCTACACAAA 184088 || || ||| || || | ||||| |||||||| ||||||||||| |||||||| || Sbjct 23968 TTNCGTTTCTCAGGAAATTCGCGCAGCGGAAGATCCTGAATTTGAGACTTTCTACACCAA 24027 Query 184089 GAACATACTTCTTAATGAAGGACTACGTGCATGGTTAGCACCTTCTGATCAACCACATGA 184148 || || || | || ||||| | || || ||| | || || ||||| || ||||| Sbjct 24028 AAATATTCTCTTAAACGAAGGTATTCGCGCTTGGATGGCGGCTCAAGATCAGCCTCATGA 24087 Query 184149 GAATTTTATATTTCCAGAGGAGGTATTACCTAGAGGCAATGCTCTTTGATG 184199 || ||||||| || |||||||| |||| | || || ||||||| ||| Sbjct 24088 AAACCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCTTTAATG 24138 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 611689600130600