Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20americanum_20[genbank_20GCA_5F900188915.1_202017-07-22] 837 sequences; 9,013,692 total letters Query= NC_015289.1 Length=176184 Score E Sequences producing significant alignments: (Bits) Value seq83 668 0.0 seq309 567 8e-157 >seq83 Length=41462 Score = 668 bits (740), Expect = 0.0 Identities = 737/979 (75%), Gaps = 2/979 (0%) Strand=Plus/Plus Query 164773 TGGGTGACTTCCACCAATAACCGTCTTTATGTCGGTTGGTTCGGTGTTCTTATGATCCCC 164832 ||| | ||| ||| | ||||||||||| | || ||||| |||||| | |||||||| Sbjct 3509 TGGATAACTAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCT 3568 Query 164833 TGTTTGCTCGCCGCTACAATTTGT-TTTATTACTGCATTCATCGCTGCTCCCCCTGTGGA 164891 || | | || || | ||| ||||||| ||| ||||| |||||||| || || || Sbjct 3569 ACCTTATTGACGGCAACT-TCTGTATTTATTATTGCCTTCATTGCTGCTCCTCCAGTAGA 3627 Query 164892 CATTGATGGTATTCGTGAACCTGTCGCAGGTTCTCTAATGTACGGTAACAACATCATCTC 164951 |||||||||||||||||||||||| |||| |||||| | ||||| ||||| || || || Sbjct 3628 CATTGATGGTATTCGTGAACCTGTTTCAGGGTCTCTACTTTACGGAAACAATATTATTTC 3687 Query 164952 TGGTGCTGTCGTTCCGTCTTCTAACGCAATCGGACTTCACTTCTATCCTATTTGGGAAGC 165011 ||||| | |||| ||||| || || || | || || || || || |||||||| Sbjct 3688 CGGTGCCATTATTCCTACTTCTGCAGCTATAGGTTTACATTTTTACCCAATCTGGGAAGC 3747 Query 165012 TGCAACCATGGATGAATGGTTGTACAACGGTGGTCCTTACCAGTTGGTTGTCTTCCACTT 165071 ||| || | ||||||||||| ||||||||||||||||| | | |||| | ||||| Sbjct 3748 GGCATCCGTTGATGAATGGTTATACAACGGTGGTCCTTATGAACTAATTGTTCTACACTT 3807 Query 165072 CCTCATCGGTGTAGCTTGCTACATGGGTCGTGAGTGGGAACTGTCTTACCGCCTCGGTAT 165131 | | | || |||||||| |||||||||||||||||||| || | ||| || ||||| Sbjct 3808 CTTACTTGGCGTAGCTTGTTACATGGGTCGTGAGTGGGAGCTTAGCTTCCGTCTGGGTAT 3867 Query 165132 GCGTCCTTGGATTTGCGTAGCATATAGCGCACCTGTCGCTGCTGCTGCCGCAGTTTTCCT 165191 ||| ||||||||| || |||||| || ||||| || |||||| ||||||||||| | Sbjct 3868 GCGACCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACCGCAGTTTTCTT 3927 Query 165192 GGTCTATCCTTTCGGTCAAGGGAGTTTCTCTGATGGTATGCCTCTTGGTATCTCTGGTAC 165251 | |||| || |||||||||| ||||| ||||||||||||||||| || ||||||||||| Sbjct 3928 GATCTACCCAATCGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATCTCTGGTAC 3987 Query 165252 TTTTAACTATATGTTCGTCTTCCAAGCAGAACATAACATTCTTATGCATCCGTTCCACAT 165311 ||| || | ||| | || ||||| || || || ||||| |||||||| || || ||||| Sbjct 3988 TTTCAATTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCACAT 4047 Query 165312 GCTCGGCGTTGCTGGGGTATTCGGTGGATCTCTTTTCTCTGCTATGCATGGAAGTCTTGT 165371 | | ||||| ||||| |||||||| || || || ||| |||||||||||| | || Sbjct 4048 GTTAGGCGTGGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTCCTTGGT 4107 Query 165372 TACTTCCTCACTCGTCCGCGAGACAACTGAAACAGAGAGTCAGAACTACGGTTATAAGTT 165431 ||||| | || | || || || |||| || | || | ||||| | || Sbjct 4108 AACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATT 4167 Query 165432 TGGACAAGAAGAAGAGACCTATAACATCGTCGCTGCCCACGGGTACTTCGGTCGTCTCAT 165491 || ||||| ||||| || ||||| ||||| || || || || || || || || | || Sbjct 4168 CGGTCAAGAGGAAGAAACTTATAATATCGTAGCCGCTCATGGTTATTTTGGCCGATTGAT 4227 Query 165492 TTTCCAATACGCATCCTTCAACAATTCCCGTTCGCTGCACTTCTTCCTCGCAGCATGGCC 165551 |||||||| || |||||||| || |||||| | ||||||||||| || || ||||| Sbjct 4228 CTTCCAATATGCTAGTTTCAACAACTCTCGTTCGTTACACTTCTTCCTAGCTGCTTGGCC 4287 Query 165552 TGTAGTTGGTATCTGGTTCACTGCTCTTGGTGTTAGCACCATGGCATTCAACCTGAACGG 165611 |||||| ||||||||||| || ||| | ||| ||||||| ||||| |||||||| || || Sbjct 4288 TGTAGTAGGTATCTGGTTTACCGCTTTAGGTATTAGCACTATGGCTTTCAACCTAAATGG 4347 Query 165612 TTTCAACTTCAACCAGTCTATTGTTGATAGTCAGAACAAAATCATCCCTACTTGGGCTGA 165671 |||||| |||||||| ||| | ||||| |||||| | || ||||||||||| Sbjct 4348 TTTCAATTTCAACCAATCTGTAGTTGACAGTCAGGGTCGTGTAATTAACACTTGGGCTGA 4407 Query 165672 CGTTCTGAACCGTGCTGGTCTGGGTATGGAAGTTATGCATGAGCGTAACGCTCACAACTT 165731 | | ||||||||| || |||||||||||||||||||| ||||| ||||| ||||| Sbjct 4408 TATCATCAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAACTT 4467 Query 165732 CCCCCTCGACCTCGCTGCT 165750 ||| || ||||| |||||| Sbjct 4468 CCCTCTAGACCTAGCTGCT 4486 >seq309 Length=37764 Score = 567 bits (628), Expect = 8e-157 Identities = 726/992 (73%), Gaps = 8/992 (1%) Strand=Plus/Plus Query 166191 GATCGTTTCGTTTTTGTTGGTTGGTCTGGACTTCTTCTTCTTCCCACTGCTTATCTTGCT 166250 || |||||||||||||| || ||||| || || | || |||| ||| ||| | ||| Sbjct 23148 GACCGTTTCGTTTTTGTAGGCTGGTCCGGTCTATTGCTCTTTCCTTGTGCCTATTTCGCT 23207 Query 166251 ATTGGCGGTTGGCTCACTGGGACTACTTTCGTCACGAGTTGGTATACTCATGGACTCGCA 166310 | || |||||| |||| || || || || || || |||||||| |||||| | || Sbjct 23208 GTAGGGGGTTGGTTCACAGGTACAACCTTTGTAACTTCATGGTATACCCATGGATTGGCC 23267 Query 166311 AGCAGTTATCTGGAGGG-TGCAAACTTTCTTA-CTGCGGCAGTTTCTACTCCAGCAGATG 166368 || |||| |||| || ||||| ||||||| |||| || ||||||||||| || || Sbjct 23268 AGTTCTTATTTGGAAGGCTGCAA--TTTCTTAACTGCCGCGGTTTCTACTCCTGCTAATA 23325 Query 166369 CTATGGGTCATTCTCTACTTCTTCTCTGGGGTCCTGAGGCTCAAGGGGATTTCGTCAGGT 166428 | | | ||||| || | | || ||||| ||||| || ||||| ||||| | | Sbjct 23326 GTTTAGCACATTCGTTATTGTTACTATGGGGGCCTGAAGCACAAGGAGATTTTACTCGTT 23385 Query 166429 GGTGCCAACTTGGAGGGCTTTGGGCCTTTGTTGCTCTCCACGGTGCTTTTGCCCTAATTG 166488 |||| ||| | || || || ||| | |||||||||||||| || ||||||| |||||| | Sbjct 23386 GGTGTCAATTGGGGGGTCTGTGGACTTTTGTTGCTCTCCATGGAGCTTTTGGCCTAATAG 23445 Query 166489 G-TTTCATGCTTCGGCAGTTTGAAATCGCTCG-TCTAGTAGGTATTCGTCCGTACAATGC 166546 | ||| ||| | || || || || | ||||| ||| | | | | || || ||||| Sbjct 23446 GNTTTTATGTTACGTCAATTCGAGCTTGCTCGATCTGTTCAAT-TGAGACCTTATAATGC 23504 Query 166547 AATCGCTTTTTCTGGTCCTATTGCTGTCTTCGTTAGTGTCTTTCTCATCTACCCTCTGGG 166606 |||||| || |||||||| |||||||| || ||| ||| ||||| || || || || || Sbjct 23505 AATCGCATTCTCTGGTCCAATTGCTGTTTTTGTTTCTGTATTTCTGATTTATCCACTAGG 23564 Query 166607 TCAATCGAGTTGGTTTTTCGCTCCATCTTTCGGGGTCTCAGCAATCTTCCGATTCCTCCT 166666 ||| || ||||||| || || || ||| || || |||| || || |||||| |||| Sbjct 23565 TCAGTCTGGTTGGTTCTTTGCACCTAGTTTTGGTGTAGCAGCTATATTTCGATTCATCCT 23624 Query 166667 TTTCCTTCAAGGATTCCACAACTGGACACTGAACCCATTTCATATGATGGGTGTAGCAGG 166726 || ||||||| || || || ||||| ||||||| |||||||||||||| || || || Sbjct 23625 ATTTTTTCAAGGGTTTCATAATTGGACCTTGAACCCCTTTCATATGATGGGAGTTGCCGG 23684 Query 166727 TATTCTCGGTGGTGCATTGCTTTCTGCCATCCATGGTGTTACAGTAGAGAACACTCTGTA 166786 | | | || | ||| ||||| | ||||| ||||||| ||| ||||| || ||| | | Sbjct 23685 TGTATTGGGCGCTGCTTTGCTATGCGCCATTCATGGTGCTACCGTAGAAAATACTTTATT 23744 Query 166787 TCAAGATGGTGAACAGGCAAATACTTTCAAGGCATTCGACTCTACTCAAGAGGAAGAAAC 166846 | |||| ||||| |||||||| ||| || || || | ||||||| |||||||| Sbjct 23745 TGAAGACGGTGATGGTGCAAATACATTCCGTGCTTTTAACCCAACTCAAGCCGAAGAAAC 23804 Query 166847 CTATTCAATGGTTACAGCAAACCGCTATTGGTCTCAGATCTTCGGTATTGCGTTTAGTAA 166906 ||||||||||| || || ||||||| |||||| || ||||| || |||| ||| || Sbjct 23805 TTATTCAATGGTCACCGCTAACCGCTTTTGGTCCCAAATCTTTGGGGTTGCTTTTTCCAA 23864 Query 166907 TAAGAGGTGGTTGCATTTCTTTATGCTGTTTGTTCCTGTTATGGGTCTGTGGACAAGTTC 166966 ||| | ||||| |||||||||||| | ||||| || || | ||| | |||| ||| | Sbjct 23865 TAAACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACCGGTTTATGGATGAGTGC 23924 Query 166967 CATCGGTATTATTGGTCTTGCTCTCAACCTTCGTGCTTATGACTTT-GTTTCCCAAGAAC 167025 | || | | ||||| ||||| ||||| ||||| |||||||| ||||| || ||| Sbjct 23925 TCTTGGAGTAGTCGGTCTAGCTCTGAACCTACGTGCCTATGACTTNCGTTTCTCAGGAAA 23984 Query 167026 TAAGGGCAGCAGAGGATCCTGAGTTTGAAACCTTCTATACCAAGAACATTCTCTTGAATG 167085 | | ||||| || |||||||| ||||| || ||||| ||||| || |||||||| || | Sbjct 23985 TTCGCGCAGCGGAAGATCCTGAATTTGAGACTTTCTACACCAAAAATATTCTCTTAAACG 24044 Query 167086 AGGGTATGCGTTCTTGGATGGCAACTATCGATCAACCTCATGAGAGTTTCGTATTCCCTG 167145 | ||||| || |||||||||| || ||||| |||||||| | | ||||||||| Sbjct 24045 AAGGTATTCGCGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTG 24104 Query 167146 AAGAGGTTCTTCCTAGAGGTAACGCTCTCTAA 167177 | |||||||| || | || |||||||| ||| Sbjct 24105 AGGAGGTTCTACCACGTGGAAACGCTCTTTAA 24136 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 563654902698880