Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20americanum_20[genbank_20GCA_5F900188915.1_202017-07-22] 837 sequences; 9,013,692 total letters Query= NC_019516.1 Length=161440 Score E Sequences producing significant alignments: (Bits) Value seq83 612 2e-170 seq309 508 6e-139 >seq83 Length=41462 Score = 612 bits (678), Expect = 2e-170 Identities = 705/946 (75%), Gaps = 2/946 (0%) Strand=Plus/Plus Query 8290 GGCTGGTTTGGCGTTCTCATGATCCCAACCCTTCTTGCCGCTACAATTTGC-TTCATTAC 8348 || |||||||| ||| | |||||||| ||| || ||| || | | || || |||| Sbjct 3542 GGATGGTTTGGTGTTTTGATGATCCCTACC-TTATTGACGGCAACTTCTGTATTTATTAT 3600 Query 8349 CGCATTCGTTGCTGCTCCTCCTGTGGACATCGACGGCATCCGCGAACCAGTTGCTGGATC 8408 || ||| ||||||||||||| || ||||| || || || || ||||| ||| | || || Sbjct 3601 TGCCTTCATTGCTGCTCCTCCAGTAGACATTGATGGTATTCGTGAACCTGTTTCAGGGTC 3660 Query 8409 TCTCATGTACGGTAACAACATCATCTCTGGTGCAGTTGTTCCCAGCTCTAACGCAATTGG 8468 ||| | ||||| ||||| || || || ||||| || |||| | ||| || || || Sbjct 3661 TCTACTTTACGGAAACAATATTATTTCCGGTGCCATTATTCCTACTTCTGCAGCTATAGG 3720 Query 8469 CCTCCACTTCTACCCCATCTGGGAAGCCGCTTCTCTTGATGAGTGGCTCTACAACGGTGG 8528 | || || ||||| ||||||||||| || || ||||||| ||| | ||||||||||| Sbjct 3721 TTTACATTTTTACCCAATCTGGGAAGCGGCATCCGTTGATGAATGGTTATACAACGGTGG 3780 Query 8529 TCCTTACCAGCTTGTAGTTTTCCACTTCCTCCTTGGCGTCTTTGCTTATATGGGTCGTGA 8588 |||||| | || | ||| | |||||| | |||||||| | ||| ||||||||||| Sbjct 3781 TCCTTATGAACTAATTGTTCTACACTTCTTACTTGGCGTAGCTTGTTACATGGGTCGTGA 3840 Query 8589 ATGGGAACTTTCTTACCGCCTTGGCATGCGTCCTTGGATCTGTGTTGCATACTCTGCTCC 8648 ||||| ||| | ||| || || ||||| |||||||| ||||||||| || ||||| Sbjct 3841 GTGGGAGCTTAGCTTCCGTCTGGGTATGCGACCTTGGATTGCTGTTGCATATTCAGCTCC 3900 Query 8649 TGTTGCCGCTGCTTCTGCTGTATTCCTTGTCTATCCTTTTGGTCAAGGTTCGTTCTCTGA 8708 |||||| |||||| | || || ||| | |||| || | |||||||| || ||||| Sbjct 3901 TGTTGCAGCTGCTACCGCAGTTTTCTTGATCTACCCAATCGGTCAAGGAAGTTTTTCTGA 3960 Query 8709 TGGTATGCCTCTTGGTATCTCCGGTACGTTCAACTATATGCTTGTCTTCCAGGCTGAGCA 8768 |||||||||||| || ||||| ||||| ||||| | ||| |||| |||||||||||||| Sbjct 3961 TGGTATGCCTCTAGGAATCTCTGGTACTTTCAATTTCATGATTGTATTCCAGGCTGAGCA 4020 Query 8769 CAACATCCTGATGCACCCCTTCCACATGCTTGGTGTTGCTGGTGTCTTCGGCGGATCTCT 8828 ||||||||| |||||||| || |||||| | || || |||||||| |||||||| || || Sbjct 4021 CAACATCCTTATGCACCCATTTCACATGTTAGGCGTGGCTGGTGTATTCGGCGGCTCCCT 4080 Query 8829 CTTTTCCGCAATGCATGGTTCACTCGTTACTTCTTCGCTGGTTCGTGAGACCACCGAAAC 8888 || || ||||||||||| | || |||||| || | | || ||||| |||| Sbjct 4081 ATTCAGTGCTATGCATGGTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAA 4140 Query 8889 CGAGTCTCAAAACTATGGCTACAAGTTCGGTCAAGAAGAGGAAACTTACAACATTGTTGC 8948 || ||| || | || |||| ||||||||||| || |||||||| || || || || Sbjct 4141 TGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGC 4200 Query 8949 CGCTCATGGCTACTTTGGTCGCTTGATCTTCCAATATGCATCTTTTAACAATTCTAGAAG 9008 ||||||||| || ||||| || ||||||||||||||||| ||| ||||| ||| | Sbjct 4201 CGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTC 4260 Query 9009 CTTGCATTTCTTCCTCGCTGCGTGGCCTGTGGTGGGAATCTGGTTTACCGCCCTCGGCGT 9068 || || |||||||| ||||| |||||||| || || |||||||||||||| | || | Sbjct 4261 GTTACACTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATCTGGTTTACCGCTTTAGGTAT 4320 Query 9069 CTCGACCATGGCTTTCAACCTCAATGGCTTCAACTTCAACCAGTCCATTATCGACGGACA 9128 || |||||||||||||| ||||| ||||| |||||||| || | | ||| | || Sbjct 4321 TAGCACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGACAGTCA 4380 Query 9129 AGGACGAGTGCTCAACACCTGGGCAGACGTACTTAACCGCGCAGGACTCGGTATGGAAGT 9188 || || || | ||||| ||||| || | | ||||| || || ||||||||||| Sbjct 4381 GGGTCGTGTAATTAACACTTGGGCTGATATCATCAACCGTGCTAACCTTGGTATGGAAGT 4440 Query 9189 CATGCACGAAAGAAACGCACACAACTTCCCGCTTGACCTTGCGGCT 9234 ||||| ||| | || || || |||||||| || ||||| || ||| Sbjct 4441 TATGCATGAACGTAATGCTCATAACTTCCCTCTAGACCTAGCTGCT 4486 >seq309 Length=37764 Score = 508 bits (562), Expect = 6e-139 Identities = 716/1001 (72%), Gaps = 4/1001 (0%) Strand=Plus/Plus Query 9815 TTTGACATCCTTGATGACTGGCTTAAACGAGATCGCTTTGTTTTTGTGGGTTGGTCTGGA 9874 ||||| || | ||||||||| | | || || || |||||||| || ||||| || Sbjct 23118 TTTGATATTATGGATGACTGGTTACGGAGGGACCGTTTCGTTTTTGTAGGCTGGTCCGGT 23177 Query 9875 CTACTTCTTTTTCCCACTGCTTATCTTGCAATTGGTGGCTGGCTTACTGGCACTACGTTT 9934 ||| | || ||||| ||| ||| | || | || || ||| | || || || || ||| Sbjct 23178 CTATTGCTCTTTCCTTGTGCCTATTTCGCTGTAGGGGGTTGGTTCACAGGTACAACCTTT 23237 Query 9935 GTCACGAGTTGGTACACTCACGGACTTGCAAGTAGTTACCTTGAGGG-TGCTAATTTCCT 9993 || || ||||| || || ||| | || ||| ||| | || || ||| |||||| | Sbjct 23238 GTAACTTCATGGTATACCCATGGATTGGCCAGTTCTTATTTGGAAGGCTGC-AATTTCTT 23296 Query 9994 TACAGCGGCTGTCTCAACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGG 10053 || || || || || || |||||| || | | | ||||| | | |||| ||||| Sbjct 23297 AACTGCCGCGGTTTCTACTCCTGCTAATAGTTTAGCACATTCGTTATTGTTACTATGGGG 23356 Query 10054 TCCTGAGTCTCAGGGAGATTTCGTCCGCTGGATCCAGCTTGGGGGACTCTGGGCTTTTGT 10113 ||||| | || |||||||| || ||| || | ||||| || ||| ||||||| Sbjct 23357 GCCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTGGGGGGTCTGTGGACTTTTGT 23416 Query 10114 GGCGCTCCACGGAGCCTTCGCTTTAATCGGCTTT-ATGTTACGCCAGTTTGAGCTGGCGA 10172 || ||||| ||||| || | |||| || ||| |||||||| || || ||||| || Sbjct 23417 TGCTCTCCATGGAGCTTTTGGCCTAATAGGNTTTTATGTTACGTCAATTCGAGCTTGCTC 23476 Query 10173 GATTAATTGGAATCCGACCTTACAATGCTATCGCGTTTTCTGGGCCTATTGCTGTTTTTG 10232 ||| || | | ||||||| ||||| ||||| || ||||| || ||||||||||||| Sbjct 23477 GATCTGTTCAATTGAGACCTTATAATGCAATCGCATTCTCTGGTCCAATTGCTGTTTTTG 23536 Query 10233 TCAGTGTTTTCCTCATCTATCCACTCGGACAGTCTAGTTGGTTCTTTGCGCCGAGTTTCG 10292 | ||| || || || |||||||| || |||||| ||||||||||||| || ||||| | Sbjct 23537 TTTCTGTATTTCTGATTTATCCACTAGGTCAGTCTGGTTGGTTCTTTGCACCTAGTTTTG 23596 Query 10293 GCGTCGCGGCGATTTTCCGCTTCCTTCTCTTCCTCCAGGGCTTTCATAATTGGACGCTCA 10352 | || || || || || || ||| | || || | || || |||||||||||||| | | Sbjct 23597 GTGTAGCAGCTATATTTCGATTCATCCTATTTTTTCAAGGGTTTCATAATTGGACCTTGA 23656 Query 10353 ATCCCTTCCATATGATGGGAGTTGCTGGTATACTGGGAGGGGCGCTCCTATCAGCAATCC 10412 | ||||| ||||||||||||||||| ||| || |||| | || | |||| || || | Sbjct 23657 ACCCCTTTCATATGATGGGAGTTGCCGGTGTATTGGGCGCTGCTTTGCTATGCGCCATTC 23716 Query 10413 ACGGAGTCACTGTAGAAAACACACTTTATCAAGATGGCGAACAAGCAAACACTTTCAAAG 10472 | || | || |||||||| || | | | |||| || || ||||| || ||| | Sbjct 23717 ATGGTGCTACCGTAGAAAATACTTTATTTGAAGACGGTGATGGTGCAAATACATTCCGTG 23776 Query 10473 CTTTTGATAGCACTCAAGAAGAAGAGACCTATTCGATGGTTACTGCTAACCGTTTCTGGT 10532 ||||| | ||||||| ||||| || ||||| ||||| || |||||||| || |||| Sbjct 23777 CTTTTAACCCAACTCAAGCCGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGT 23836 Query 10533 CCCAGATATTTGGAATTGCTTTTAGCAATAAACGCTGGCTTCATTTCTTTATGCTGTTTG 10592 |||| || ||||| |||||||| ||||||||| ||| | |||||||||||| | |||| Sbjct 23837 CCCAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTG 23896 Query 10593 TACCTGTTATGGGTCTTTGGACCTCTTCTATTGGAATCATTGGTCTTGCTCTCAATCTTC 10652 |||| || | ||| | |||| | || ||||| | | ||||| ||||| || || | Sbjct 23897 TACCAGTAACCGGTTTATGGATGAGTGCTCTTGGAGTAGTCGGTCTAGCTCTGAACCTAC 23956 Query 10653 GTGCTTACGA-TTTTGTATCTCAAGAGATCAGGGCGTCAGAAGATCCTGAATTTGAGACG 10711 |||| || || || || ||||| || || | || | |||||||||||||||||||| Sbjct 23957 GTGCCTATGACTTNCGTTTCTCAGGAAATTCGCGCAGCGGAAGATCCTGAATTTGAGACT 24016 Query 10712 TTCTATACGAAGAATATCCTTCTGAACGAAGGTCTTCGTGCATGGATGGCACCAGTTGAC 10771 ||||| || || ||||| || | ||||||||| |||| || |||||||| | || Sbjct 24017 TTCTACACCAAAAATATTCTCTTAAACGAAGGTATTCGCGCTTGGATGGCGGCTCAAGAT 24076 Query 10772 CAACCACACGAAAGCTTTGTTTTCCCAGAAGAAGTTCTTCC 10812 || || || |||| | || | ||||| || || ||||| || Sbjct 24077 CAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACC 24117 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 516474596328000