Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20americanum_20[genbank_20GCA_5F900188915.1_202017-07-22] 837 sequences; 9,013,692 total letters Query= NC_020835.1 Length=47325 Score E Sequences producing significant alignments: (Bits) Value seq83 556 4e-154 >seq83 Length=41462 Score = 556 bits (616), Expect = 4e-154 Identities = 724/993 (73%), Gaps = 6/993 (1%) Strand=Plus/Minus Query 17828 GATTGAAGCTAAATCTAGCGGGAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCC 17887 ||| | ||||| ||||| |||||||||||||||||||| || ||||||||||| | || Sbjct 4489 GATAGCAGCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACC 4430 Query 17888 AAGGTTAGCTCTGTTGAGTACGTCAGCCCATGTAGGTACGACTTGTCCTCCAGCTG-CTA 17946 ||||||||| | ||||| | |||||||| || | || | || | ||| | | Sbjct 4429 AAGGTTAGCACGGTTGATGATATCAGCCCAAGTGTTAATTACACGACCCTGA-CTGTCAA 4371 Query 17947 CAATGGATTGGTTGAAGTTGAATCCATTGAGATTAAAAGCCATAGTGGAGATTCCCATAG 18006 | | ||||||||||| ||||| ||||| || || |||||||||||| || || | || Sbjct 4370 CTACAGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTAATACCTAAAG 4311 Query 18007 AGGTAAGCCATATGCAAGTGACGGGCCAAGCAGCCAAGAAGAAATGTAGACTCCTGCTA- 18065 ||||| ||| || | || ||||||||||| | |||||| |||| || | | Sbjct 4310 CGGTAAACCAGATACCTACTACAGGCCAAGCAGCTAGGAAGAAGTGTA-ACGAACGAGAG 4252 Query 18066 TTGTTAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATA 18125 ||||| || |||||||| |||||||| | || ||||| || |||||||| || || ||| Sbjct 4251 TTGTTGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCGGCTACGATA 4192 Query 18126 TTATACGTCTCTTCTTCTTGGCCAAATTTATATCCATAGTTCTGAGACTCAAGCTCAGTC 18185 ||||| || ||||| ||||| || ||| | || || | || ||| ||| || || Sbjct 4191 TTATAAGTTTCTTCCTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTG 4132 Query 18186 GTTTCTCTAATAAGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCA 18245 ||||| || || | ||||| || | || ||||||||| ||||| | || Sbjct 4131 GTTTCCCTGATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTGAATAGGGAGCCG 4072 Query 18246 CCGAATACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCGGCT 18305 |||||||| || || || || | ||| || || || ||||||||||| ||||| || || Sbjct 4071 CCGAATACACCAGCCACGCCTAACATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCC 4012 Query 18306 TGGAATACGAACATGAAATTGAAAGTACCGCTAATACCAAGAGGCATACCATCAGAGAAA 18365 |||||||| | |||||||||||||||||| || || ||||||||||||||||| ||| Sbjct 4011 TGGAATACAATCATGAAATTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGAAAAA 3952 Query 18366 CTCCCTTGTCCAAAAGGATAAA-CGAGAAATACTGAGAAGGCAGCTGCTACTGGTGCGGA 18424 || ||||| || | || || | | ||||| |||| | |||||||| || || || || Sbjct 3951 CTTCCTTGACCGATTGGGTAGATCAAGAAA-ACTGCGGTAGCAGCTGCAACAGGAGCTGA 3893 Query 18425 ATAAGCAACACAAATCCACGGGCGCATACCTAGTCTATAACTAAGTTCCCATTGTCGTCC 18484 ||| |||||| |||||| || |||||||| || | | ||||| ||||| | || || Sbjct 3892 ATATGCAACAGCAATCCAAGGTCGCATACCCAGACGGAAGCTAAGCTCCCACTCACGACC 3833 Query 18485 CATGTAAGCTGCGATGCCGATGAGAAAGTGGAACACAATGAGTTGATATGGTCCTCCGTT 18544 ||||||| || | ||| | | ||||| | ||||| |||| ||| || || ||||| Sbjct 3832 CATGTAACAAGCTACGCCAAGTAAGAAGTGTAGAACAATTAGTTCATAAGGACCACCGTT 3773 Query 18545 ATATAACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGC 18604 |||||||| || || | || ||| ||||||||||||||||| || || | ||| || || Sbjct 3772 GTATAACCATTCATCAACGGATGCCGCTTCCCAGATTGGGTAAAAATGTAAACCTATAGC 3713 Query 18605 GTTAGATGACGGGACGATTGCCCCTGATATGATGTTGTTTCCATAGAGTAAGGCTCCTGA 18664 ||| | || | || || || || || || |||||||| || |||| | ||||| Sbjct 3712 TGCAGAAGTAGGAATAATGGCACCGGAAATAATATTGTTTCCGTAAAGTAGAGACCCTGA 3653 Query 18665 GACAGGCTCACGAATACCATCTATGTCAACGGGAGGAGCAGCAACAAATGCAATCAAAAA 18724 ||||| |||||||||||||| ||||| || ||||||||||||| || ||||| | ||| Sbjct 3652 AACAGGTTCACGAATACCATCAATGTCTACTGGAGGAGCAGCAATGAAGGCAATAATAAA 3593 Query 18725 TGCTGTAGCTGCGGTTAAAAGTGCAGGGATCATAAGTACCCCAAACCACCCCACGTAGAG 18784 | | | || ||| || || | | ||||||||| | || |||||||| || | ||| || Sbjct 3592 TACAGAAGTTGCCGTCAATAAGGTAGGGATCATCAAAACACCAAACCATCCAATGTAAAG 3533 Query 18785 GCGGTTGTTTGTACTCGTAACCCAGTCACATAA 18817 ||||| | || || || | ||||| ||| || Sbjct 3532 ACGGTTTTCAGTGCTAGTTATCCAGTTACAGAA 3500 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151316895989678