Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20americanum_20[genbank_20GCA_5F900188915.1_202017-07-22] 837 sequences; 9,013,692 total letters Query= NC_020837.1 Length=198013 Score E Sequences producing significant alignments: (Bits) Value seq83 578 5e-160 seq309 529 2e-145 >seq83 Length=41462 Score = 578 bits (640), Expect = 5e-160 Identities = 705/964 (73%), Gaps = 8/964 (1%) Strand=Plus/Minus Query 103171 AGCAGCAAGGTCAAGGGGGAAGTTGTGAGCGTTACGCTCGTGCATGACTTCCATACCCAG 103230 |||||| ||||| || |||||||| ||||| ||||| || ||||| ||||||||||| || Sbjct 4486 AGCAGCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAG 4427 Query 103231 ACCAGCGCGGTTGAGAACGTCTGCCCAGGTGTTCAACACACGACCCTGACCATCAAGGAT 103290 ||| ||||||| | || ||||| ||||| | ||||||||||||| |||| | Sbjct 4426 GTTAGCACGGTTGATGATATCAGCCCAAGTGTTAATTACACGACCCTGACTGTCAACTAC 4367 Query 103291 GGACTGGTTGAAGTTGAATCCGTTCAGGTTGAACGCCATGGTGCTAACACCAAGTGCGGT 103350 || |||||||| ||||| || || |||||||| ||||| ||||||| ||| | ||||| Sbjct 4366 AGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTAATACCTAAAGCGGT 4307 Query 103351 GAACCAGATACCCACTACTGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGAGTTGTT 103410 ||||||||||| ||||| || | |||||||| Sbjct 4306 AAACCAGATACCTACTACAGGCCAAGCAGCTAGGAAGAAGTGTAACGAACGAGAGTTGTT 4247 Query 103411 GAATGATGCGTATTGGAAGATCAAACGACCGAAGTAACCATGAGCGGCTACGATGTTGTA 103470 ||| || |||||||||||||| || || || |||||||||||||||||||| || || Sbjct 4246 GAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCGGCTACGATATTATA 4187 Query 103471 TGTCTCTTCCTCTTGTCCGAACTTGTAACCATAGTTTTGAGATTCAGTTTCAGTCGTCTC 103530 || ||||||||||| ||||| ||||||| | || ||||||| |||| || || || Sbjct 4186 AGTTTCTTCCTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTC 4127 Query 103531 AC-GAACCAGCGAGGACGTAACAAGCGAACCGTGCATAGCACTGAACAGTGAACCACCGA 103589 | || | | | || | || |||| ||||| |||||||||||||| || || || |||| Sbjct 4126 CCTGATCAAACTAGAAGTTACCAAG-GAACCATGCATAGCACTGAATAGGGAGCCGCCGA 4068 Query 103590 AGACTCCAGCAACGCCCAGCATGTGGAAGGGGTGCATGAGAATGTTATGTTCGGCTTGGA 103649 | || ||||| ||||| | |||||| || |||||||| || ||||| || || || |||| Sbjct 4067 ATACACCAGCCACGCCTAACATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGA 4008 Query 103650 AGACCAGCATGTAGTTGAAGGTTCCCGAAATACCCAAAGGCATAGCATCGGAGAACGAAC 103709 | || | |||| | ||||| || || || || || | ||||||| |||| || || | Sbjct 4007 ATACAATCATGAAATTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGAAAAACTTC 3948 Query 103710 CTTGACCAAAGGGGTAGACCAAGAATACTGCGGACGCAGCCGCAACAGGAGCAGAGTATG 103769 ||||||| | ||||||| |||||| ||||||| ||||| ||||||||||| || |||| Sbjct 3947 CTTGACCGATTGGGTAGATCAAGAAAACTGCGGTAGCAGCTGCAACAGGAGCTGAATATG 3888 Query 103770 CGACACAGATCCAGGGGCGCATGCCCAGACGGTAGGACAATTCCCACTCACGTCCCATAT 103829 | ||| ||||| || ||||| ||||||||| || | ||||||||||| ||||| | Sbjct 3887 CAACAGCAATCCAAGGTCGCATACCCAGACGGAAGCTAAGCTCCCACTCACGACCCATGT 3828 Query 103830 ATGCATAGATGCCAATGAGGAAGTGGAATACTACAAGTTGGAAAGGACCACCGTTATACA 103889 | | | ||||| | |||||| | || | |||| ||||||||||||| || | Sbjct 3827 AACAAGCTACGCCAAGTAAGAAGTGTAGAACAATTAGTTCATAAGGACCACCGTTGTATA 3768 Query 103890 GCCACTCATCAAGAGATGCTGCTTCCCAAATGGGATAGAAGTGAAGACCAATTGCGTTGG 103949 ||| ||||||| ||||| |||||||| || || || || || | ||| || || || Sbjct 3767 ACCATTCATCAACGGATGCCGCTTCCCAGATTGGGTAAAAATGTAAACCTATAGC--TGC 3710 Query 103950 AGGAG--GGAACAACTGCACCAGAGATGATGTTGTTACCGTACATGAGTGAACCAGCGAC 104007 || || |||| || ||||| || || || ||||| ||||| | || || || | || Sbjct 3709 AGAAGTAGGAATAATGGCACCGGAAATAATATTGTTTCCGTAAAGTAGAGACCCTGAAAC 3650 Query 104008 GGGTTCACGAATGCCGTCGATATCGACGGGAGGTGCTGCTACGAAAGCAACGATGAA-GC 104066 ||||||||||| || || || || || ||||| || || | ||| |||| || || | Sbjct 3649 AGGTTCACGAATACCATCAATGTCTACTGGAGGAGCAGCAATGAAGGCAATAATAAATAC 3590 Query 104067 AGATGGTTGCCGCCAACAGAGTTGGGATCATCAGCACACCGAACCAACCAACATAGAGAC 104126 ||| ||||||| ||| | || |||||||||| ||||| ||||| |||| || |||| Sbjct 3589 AGA-AGTTGCCGTCAATAAGGTAGGGATCATCAAAACACCAAACCATCCAATGTAAAGAC 3531 Query 104127 GGTT 104130 |||| Sbjct 3530 GGTT 3527 >seq309 Length=37764 Score = 529 bits (586), Expect = 2e-145 Identities = 730/1016 (72%), Gaps = 4/1016 (0%) Strand=Plus/Minus Query 101710 AGAGCGTTGCCTCTTGGCAATACCTCTTCAGGAAATACAAAGTTTTCATGCGGTTGATCG 101769 |||||||| || | ||| | ||||| ||||| |||| || ||||||||| || ||||| Sbjct 24132 AGAGCGTTTCCACGTGGTAGAACCTCCTCAGGGAATATAAGGTTTTCATGAGGCTGATCT 24073 Query 101770 ACTGGTGCCAACCATGCACGTAGACCTTCATTCAATAGGATGTTCTTTGTGTAGAACGTC 101829 | |||| ||| || || | |||||| || || || || || || |||||||| ||| Sbjct 24072 TGAGCCGCCATCCAAGCGCGAATACCTTCGTTTAAGAGAATATTTTTGGTGTAGAAAGTC 24013 Query 101830 TCGAACTCTGGATCTTCTGCTGCTCTGATCTCTTGGGATAC-AAAGTCATAAGCACGAAG 101888 || || || |||||||| ||||| | || || || || || |||||||| ||||| || Sbjct 24012 TCAAATTCAGGATCTTCCGCTGCGCGAATTTCCTGAGAAACGNAAGTCATAGGCACGTAG 23953 Query 101889 GTTGAGAGCAAGACCAATAATACCGATGGAACTTGTCCACAGACCCATAACAGGAACAAA 101948 ||| ||||| ||||| | | || | | ||| |||| | ||| | || || ||||| Sbjct 23952 GTTCAGAGCTAGACCGACTACTCCAAGAGCACTCATCCATAAACCGGTTACTGGTACAAA 23893 Query 101949 GAGCATAAAGAAATGCAACCACCTCTTATTACTAAATGCAATACCAAAGATTTGAGACCA 102008 | |||||||||||| ||||| | ||||| ||| |||| ||||||||||| ||||| Sbjct 23892 TAACATAAAGAAATGTAACCAACGTTTATTGGAAAAAGCAACCCCAAAGATTTGGGACCA 23833 Query 102009 GAAACGGTTTGCTGTAACCATTGAATAAGTCTCTTCCTCTTGTGTGGAATCGAATGCTTT 102068 || ||||| || || |||||||||||||| ||||| |||| || | | || || Sbjct 23832 AAAGCGGTTAGCGGTGACCATTGAATAAGTTTCTTCGGCTTGAGTTGGGTTAAAAGCACG 23773 Query 102069 GAAAGTGTTTGCTTGATCACCATCTTCATACAGAGTGTTCTCCACAGTGACACCGTGGAT 102128 ||| || ||||| |||||| |||||| | | ||| || || || || |||| || || Sbjct 23772 GAATGTATTTGCACCATCACCGTCTTCAAATAAAGTATTTTCTACGGTAGCACCATGAAT 23713 Query 102129 TGCTGACAGCAGTGCTCCTCCCAGGATACCTGCAACACCCATCATATGGAATGGGTTGAG 102188 || | |||| || | |||| | ||| ||||| ||||||||||| || ||||| | Sbjct 23712 GGCGCATAGCAAAGCAGCGCCCAATACACCGGCAACTCCCATCATATGAAAGGGGTTCAA 23653 Query 102189 CGTCCAGTTATGGAAGCCCTGTAGGAAGAGTAGGAATCTAAATATCGCTGCAACACCAAA 102248 ||||| ||||| || || || | || || | ||||| |||||| ||||| |||||||| Sbjct 23652 GGTCCAATTATGAAACCCTTGAAAAAATAGGATGAATCGAAATATAGCTGCTACACCAAA 23593 Query 102249 CGAGGGCGCAAAGAACCAACTGGACTGTCCGAGAGGATAGATGAGAAACACACTGACAAA 102308 || ||||||||||||| ||||| || || ||||| || ||||| ||| ||||| Sbjct 23592 ACTAGGTGCAAAGAACCAACCAGACTGACCTAGTGGATAAATCAGAAATACAGAAACAAA 23533 Query 102309 AACAGCGATAGGCCCAGAGAACGCAATAGCATTGTACGGACGAATTCCAATTAACCTAGC 102368 |||||| || || |||||||| || || ||||| || || | | | || | | ||| Sbjct 23532 AACAGCAATTGGACCAGAGAATGCGATTGCATTATAAGGTCTCAATTGAACAGATCGAGC 23473 Query 102369 CAACTCGAATTGACGAAGCATGAAA-CCAATGAGGGCAAATGCACCGTGGAGAGCCACAA 102427 | |||||||||||| | ||| ||| || || ||| |||| || || |||||||| |||| Sbjct 23472 AAGCTCGAATTGACGTAACATAAAANCCTATTAGGCCAAAAGCTCCATGGAGAGCAACAA 23413 Query 102428 AAGCCCAGAGTCCCCCAAGTTGGACCCACCTGACGAAATCTCCTTGAGCTTCAGGACCCC 102487 ||| ||| || ||||| | ||| ||| | ||||||||||| |||||||| |||| Sbjct 23412 AAGTCCACAGACCCCCCAATTGACACCAACGAGTAAAATCTCCTTGTGCTTCAGGCCCCC 23353 Query 102488 AAAGTAGAAGAAGAGAATGACCCATAGAGTCAGCAGGCGTTGACACAGCAGCTGTAAGGA 102547 | |||| | | ||||| | | | | |||||| || || || || || || | || Sbjct 23352 ATAGTAACAATAACGAATGTGCTAAACTATTAGCAGGAGTAGAAACCGCGGCAGTTAAGA 23293 Query 102548 AATTAGCA-CCTTCAAGGTAACTAGACGCAAGCCCGTGGGTATACCAGGAAGTAGCAAAC 102606 |||| ||| ||||| | ||| | || | || ||||||||||| ||||| |||| Sbjct 23292 AATT-GCAGCCTTCCAAATAAGAACTGGCCAATCCATGGGTATACCATGAAGTTACAAAG 23234 Query 102607 GTCGTGCCAGTAAGCCAGCCCCCAATTGCGAGATAAGCAGTGGGAAAAAGAAGTAGTCCA 102666 || || || || | ||| ||||| | |||| ||| ||| ||||| || | ||| || Sbjct 23233 GTTGTACCTGTGAACCAACCCCCTACAGCGAAATAGGCACAAGGAAAGAGCAATAGACCG 23174 Query 102667 GACCAACCCACAAAGACAAAGCGATCTCGTTTAATCCAGTCATCCAGGATGTCAAA 102722 ||||| || ||||| || || || || | | ||||||||||| || ||||| Sbjct 23173 GACCAGCCTACAAAAACGAAACGGTCCCTCCGTAACCAGTCATCCATAATATCAAA 23118 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633506971863960