Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20americanum_20[genbank_20GCA_5F900188915.1_202017-07-22] 837 sequences; 9,013,692 total letters Query= NC_020845.1 Length=180977 Score E Sequences producing significant alignments: (Bits) Value seq83 500 1e-136 seq309 405 6e-108 >seq83 Length=41462 Score = 500 bits (554), Expect = 1e-136 Identities = 703/984 (71%), Gaps = 2/984 (0%) Strand=Plus/Minus Query 124049 GCTAGGTCTAGTGGGAAGTTGTGTGCATTTCTTTCATGCATAACTTCCATACCCAAGTTT 124108 ||||||||||| |||||||| || ||||| | ||||||||||||||||||||| | ||| Sbjct 4482 GCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAGGTTA 4423 Query 124109 GCTCTGTTTAGAACATCACCCCATGTTGGGACGATTTTTCCGTTAGCATCAACAACTGAT 124168 || | ||| | | |||| |||| || | | || | | ||||| || ||| Sbjct 4422 GCACGGTTGATGATATCAGCCCAAGTGTTAATTACACGACCCTGACTGTCAACTACAGAT 4363 Query 124169 TGGTTAAAGTTGAAACCATTCAAGTTGAATGCCATTGTGCAGATACCCATAGAGGTTAAC 124228 ||||| || ||||||||||| | |||||| ||||| |||| ||||| | || ||| ||| Sbjct 4362 TGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTAATACCTAAAGCGGTAAAC 4303 Query 124229 CATACACATACAACAGGGAAAACTGCTAGGAAGAAGTGAAGACTTCTTGAGTTGTTGAAT 124288 || | || ||| ||||| || | |||||||||||||| | | ||||||||||| Sbjct 4302 CAGATACCTACTACAGGCCAAGCAGCTAGGAAGAAGTGTAACGAACGAGAGTTGTTGAAA 4243 Query 124289 GAAGCATACTGGAAGATAAGACGACCAAAGTAACCGTGTGCTGCTACTATGTTGTATGTT 124348 |||||| |||||||| | || ||||| ||||| || || ||||| || || || ||| Sbjct 4242 CTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCGGCTACGATATTATAAGTT 4183 Query 124349 TCTTCTTCTTGTCCGAACTTATAACCATAGTTCTGTGACTCTTGCTCTGTTGTTTCTCTG 124408 ||||| ||||| ||||| | ||||| | || || || | ||||| ||||| ||| Sbjct 4182 TCTTCCTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCTG 4123 Query 124409 ATTAGAGAAGATGTAACAAGAGAACCATGCATTGCTGAGAATAAAGATCCTCCGAACATT 124468 || | | ||| || || | ||||||||||| || ||||| || || ||||| | Sbjct 4122 ATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTGAATAGGGAGCCGCCGAATACA 4063 Query 124469 CCTGCTACTCCTGCCATGTGGAAAGGATGCATTAGAATGTTATGCTCTGCTTGGAAAACG 124528 || || || ||| |||||| || || ||||| || ||||| ||||| || ||||| || Sbjct 4062 CCAGCCACGCCTAACATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAATACA 4003 Query 124529 AACATAAAGTTGAAAGTACCTGAGATACCAAGTGGCATACCATCAGAGAATGAACCCTGA 124588 | ||| || ||||||||||| ||||| || || |||||||||||||| || || ||| Sbjct 4002 ATCATGAAATTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGAAAAACTTCCTTGA 3943 Query 124589 CCAAATGGGTATACTAAGAATACAGCGAATGCAGCAGATACTGGTGCTGAATAAGCAACA 124648 || | |||||| | ||||| || ||| ||||| | || || |||||||| |||||| Sbjct 3942 CCGATTGGGTAGATCAAGAAAACTGCGGTAGCAGCTGCAACAGGAGCTGAATATGCAACA 3883 Query 124649 CAGATCCAAGGACGCATTCCTAATCTGTATGATAGTTCCCACTGTCTTCCCATGTATGCT 124708 |||||||| ||||| || | | | | || ||||||| | |||||||| Sbjct 3882 GCAATCCAAGGTCGCATACCCAGACGGAAGCTAAGCTCCCACTCACGACCCATGTAACAA 3823 Query 124709 GAAATACCAATAAGGAAGTGGAAAATTACCAACTGATAAGGACCACCATTATACAACCAT 124768 | | |||| | |||||| | || | | | |||||||||||| || || |||||| Sbjct 3822 GCTACGCCAAGTAAGAAGTGTAGAACAATTAGTTCATAAGGACCACCGTTGTATAACCAT 3763 Query 124769 TCATCAACAGTTGCTGCTTCCCAGATTGGGTAGAAGTGTAGTCCGATAGCGTTTGATGAT 124828 |||||||| | ||| ||||||||||||||||| || |||| || ||||| || | Sbjct 3762 TCATCAACGGATGCCGCTTCCCAGATTGGGTAAAAATGTAAACCTATAGCTGCAGAAGTA 3703 Query 124829 GGAACAACTGCACCAGAGATGATGTTGTTACCATATAAGAAAGAACCCGCTACTGGTTCT 124888 |||| || ||||| || || || ||||| || || | | ||| || | || ||||| Sbjct 3702 GGAATAATGGCACCGGAAATAATATTGTTTCCGTAAAGTAGAGACCCTGAAACAGGTTCA 3643 Query 124889 CTGATTCCGTCGATATCGACAGGAGGTGCTGCAATAAATGCAACGATGAA-ACATGCTGC 124947 | || || || || || || ||||| || ||||| || |||| || || ||| | | Sbjct 3642 CGAATACCATCAATGTCTACTGGAGGAGCAGCAATGAAGGCAATAATAAATACA-GAAGT 3584 Query 124948 TGCTGTGAGTAAGCATGGAATCATTAGAACACCAAACCAACCAACATAAATTCTGTTGTT 125007 ||| || | |||| || ||||| | |||||||||||| |||| |||| | ||| | Sbjct 3583 TGCCGTCAATAAGGTAGGGATCATCAAAACACCAAACCATCCAATGTAAAGACGGTTTTC 3524 Query 125008 TGTTGATGTTACCCACTCACAGAA 125031 || |||| ||| | |||||| Sbjct 3523 AGTGCTAGTTATCCAGTTACAGAA 3500 >seq309 Length=37764 Score = 405 bits (448), Expect = 6e-108 Identities = 715/1040 (69%), Gaps = 23/1040 (2%) Strand=Plus/Minus Query 122866 TTAAAGTGCGTTACCTCTTGGTAACACTTCTTCTGGGAATACAAAATTCTCATGCGGTTG 122925 |||||| ||||| || | ||||| || || || ||||||| || || ||||| || || Sbjct 24136 TTAAAGAGCGTTTCCACGTGGTAGAACCTCCTCAGGGAATATAAGGTTTTCATGAGGCTG 24077 Query 122926 GTCAACAGATGACATCCATGCTCTCATGCCTTCATTAAGAAGAATGTTCTTCGTATAGAA 122985 || || | |||||| || | || ||||| || | ||||| || || || ||||| Sbjct 24076 ATCTTGAGCCGCCATCCAAGCGCGAATACCTTCGTTTAAGAGAATATTTTTGGTGTAGAA 24017 Query 122986 AGTCTCGAACTCTGGGTCTTCTGCTGCTCTTATCTCTTGAGATAC-AAAGTCGTATGCTC 123044 |||||| || || || ||||| ||||| | || || ||||| || ||||| || || | Sbjct 24016 AGTCTCAAATTCAGGATCTTCCGCTGCGCGAATTTCCTGAGAAACGNAAGTCATAGGCAC 23957 Query 123045 TGAGGTTAAGTGCTAGACCTACGATACCTATAGATGATGTCCACATACCCATGACAGGAA 123104 ||||| || |||||||| || | || | || |||| | ||| | || || | Sbjct 23956 GTAGGTTCAGAGCTAGACCGACTACTCCAAGAGCACTCATCCATAAACCGGTTACTGGTA 23897 Query 123105 CGAACAACATAAGGAAGTGTAAGAATCTTTTGTTAGAAAATGCGATACCAAATATCTGTG 123164 | || ||||||| ||| ||||| | | ||| || ||||| || | ||||| || || | Sbjct 23896 CAAATAACATAAAGAAATGTAACCAACGTTTATTGGAAAAAGCAACCCCAAAGATTTGGG 23837 Query 123165 ACCAGAATCTGTTCGCTGTAATCATACTATAAGTTTCTTCTTCCTGTGTAGGATCGAATG 123224 |||| || | ||| || || | ||| |||||||||||| | || || || | || | Sbjct 23836 ACCAAAAGCGGTTAGCGGTGACCATTGAATAAGTTTCTTCGGCTTGAGTTGGGTTAAAAG 23777 Query 123225 CTCTGAAAGTTGTAGATTGAATCTTACCTTCAGTATATTGTGATGTGTCTTCATACAATG 123284 | | ||| |||| ||| | || ||| ||||||| | || | Sbjct 23776 CACGGAA---TGTAT-TTGCA-----CCATCACC------------GTCTTCAAATAAAG 23738 Query 123285 TGTTCTGCACTGTTGCACCATGAATGGCACATAGTAATGCTCCACCTAGTATTCCTGCAA 123344 | || | || || |||||||||||||| ||||| || || | || | || || |||| Sbjct 23737 TATTTTCTACGGTAGCACCATGAATGGCGCATAGCAAAGCAGCGCCCAATACACCGGCAA 23678 Query 123345 CACCCATCATGTGAAATGGATTCAATGTAATGTTGTGGAAACCTTGTATGAATAAGATAT 123404 | |||||||| ||||| || ||||| || || || || ||||| | |||| ||| Sbjct 23677 CTCCCATCATATGAAAGGGGTTCAAGGTCCAATTATGAAACCCTTGAAAAAATAGGATGA 23618 Query 123405 AACGAAAGATTGCTGCGACACCGAATGATGGTGCGAAGAACCAACTGTGCTGACCTAGTG 123464 | ||||| || ||||| ||||| || ||||| |||||||||| ||||||||||| Sbjct 23617 ATCGAAATATAGCTGCTACACCAAAACTAGGTGCAAAGAACCAACCAGACTGACCTAGTG 23558 Query 123465 GATAGATCAGAAAGATGCTAGTGAAGACTGCGATAACAGCAGAGAATGCGAGTGCGTTGT 123524 |||| |||||||| | | || || || || | |||||||||||| ||| || | Sbjct 23557 GATAAATCAGAAATACAGAAACAAAAACAGCAATTGGACCAGAGAATGCGATTGCATTAT 23498 Query 123525 AAGGTCTAATGCCTACAAGTCCTGCGATCTCAAATTGTCTGAGCATGAAA-CCTATGAGT 123583 ||||||| | ||| || || | ||| ||||| | | ||| ||| ||||| || Sbjct 23497 AAGGTCTCAATTGAACAGATCGAGCAAGCTCGAATTGACGTAACATAAAANCCTATTAGG 23438 Query 123584 CCAAAGACTCCATGTAATGCTACAAAGTTCCATAGACCTCCGAGTTGTAACCAACGAACG 123643 ||||| ||||||| | || ||||| |||| ||||| || | ||| |||||||| Sbjct 23437 CCAAAAGCTCCATGGAGAGCAACAAAAGTCCACAGACCCCCCAATTGACACCAACGAGTA 23378 Query 123644 AATGATCCTTGTGCTTCAGGTCCCCAAAGGAACATGAGACTATGACCCATTGCGTCACCA 123703 || ||||||||||||||| ||||| || |||| | ||| | | | | || Sbjct 23377 AAATCTCCTTGTGCTTCAGGCCCCCATAGTAACAATAACGAATGTGCTAAACTATTAGCA 23318 Query 123704 GGTGTGGAGACTGCTGCTGTTAAGAAGTTTGCTCCCTCAAGATATGAAGATGCAATACCA 123763 || || || || || || |||||||| || || || | ||| ||| || | ||| Sbjct 23317 GGAGTAGAAACCGCGGCAGTTAAGAAATTGCAGCCTTCCAAATAAGAACTGGCCAATCCA 23258 Query 123764 TGTGTATACCATGATGTAACGAAGGTAGTTCCTAAGAACCAACCACCGATTGATAGATAC 123823 || ||||||||||| || || ||||| || ||| ||||||||| || | | | ||| Sbjct 23257 TGGGTATACCATGAAGTTACAAAGGTTGTACCTGTGAACCAACCCCCTACAGCGAAATAG 23198 Query 123824 GCACAAGGCAGAAGTAAAAGACCAGACCATCCTATGAATACAAAACGATCTCTCTTTAAC 123883 |||||||| | || || ||||| ||||| |||| || || ||||| || ||| |||| Sbjct 23197 GCACAAGGAAAGAGCAATAGACCGGACCAGCCTACAAAAACGAAACGGTCCCTCCGTAAC 23138 Query 123884 CAGTCGTCAAGAACATCAAA 123903 ||||| || | || |||||| Sbjct 23137 CAGTCATCCATAATATCAAA 23118 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578992342229240