Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20americanum_20[genbank_20GCA_5F900188915.1_202017-07-22] 837 sequences; 9,013,692 total letters Query= NC_020851.1 Length=208007 Score E Sequences producing significant alignments: (Bits) Value seq83 603 1e-167 seq309 452 5e-122 >seq83 Length=41462 Score = 603 bits (668), Expect = 1e-167 Identities = 728/988 (74%), Gaps = 2/988 (0%) Strand=Plus/Minus Query 26730 AGCAGCAAGATCCAATGGAAAATTATGGGCGTTCCTTTCGTGAATCACCTCTAATCCAAG 26789 |||||| || || | || || ||||| || || | ||| || || || || | ||||| Sbjct 4486 AGCAGCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAG 4427 Query 26790 ACCAGCACGGTTGAGAACGTCTGCCCAAGTGTTGAGCACACGACCCTGTGAATCAATCAC 26849 ||||||||||| | || ||||||||||| | ||||||||||| |||| || Sbjct 4426 GTTAGCACGGTTGATGATATCAGCCCAAGTGTTAATTACACGACCCTGACTGTCAACTAC 4367 Query 26850 AGACTGATTGAAGTTGAAACCGTTGAGATTGAAAGCCATCGTGGATACACCAAGTGCGGT 26909 ||| || ||||| |||||||| || || ||||||||||| ||| | ||| | ||||| Sbjct 4366 AGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTAATACCTAAAGCGGT 4307 Query 26910 GAACCAGATGCCAACAACGGGCCATGCAGCAAGGAAGAAGTGCAAGGAACGTGAGTTGTT 26969 |||||||| || || || ||||| ||||| ||||||||||| || ||||| |||||||| Sbjct 4306 AAACCAGATACCTACTACAGGCCAAGCAGCTAGGAAGAAGTGTAACGAACGAGAGTTGTT 4247 Query 26970 GAATGAAGCATATTGGAAGATCAAACGACCGAAGTAGCCATGTGCTGCGACGATGTTGTA 27029 ||| |||||||||||||||||| || || || || ||||| || || ||||| || || Sbjct 4246 GAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCGGCTACGATATTATA 4187 Query 27030 GGTCTCTTCTTCTTGACCGAACTTATAACCATAGTTCTGTGACTCAGTTTCAGTCGTCTC 27089 || ||||| ||||||||||| | ||||| | || || ||| |||| || || || Sbjct 4186 AGTTTCTTCCTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTC 4127 Query 27090 ACGGACGAGTGAAGATGTAACCAGACTTCCGTGCATAGCAGAGAAAAGAGATCCACCGAA 27149 | || | ||| || |||| || ||||||||| ||| || || || ||||| Sbjct 4126 CCTGATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTGAATAGGGAGCCGCCGAA 4067 Query 27150 TACCCCAGCAACACCGAGCATGTGGAACGGGTGCATAAGGATATTGTGTTCTGCCTGGAA 27209 ||| ||||| || || | |||||| || |||||||||||||| ||||| || |||||||| Sbjct 4066 TACACCAGCCACGCCTAACATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAA 4007 Query 27210 TACAAGCATGTAGTTAAAAGTACCAGAGATACCAAGAGGCATAGCATCGGAGAAAGAACC 27269 ||||| |||| | || |||||||||||||| || ||||||||| |||| || ||| || Sbjct 4006 TACAATCATGAAATTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGAAAAACTTCC 3947 Query 27270 TTGACCGAAAGGATAGACGAGGAATACTGCACTCGCAGCAGCGACTGGAGCAGAATATGC 27329 |||||||| || |||| | ||| ||||| | ||||| || || ||||| |||||||| Sbjct 3946 TTGACCGATTGGGTAGATCAAGAAAACTGCGGTAGCAGCTGCAACAGGAGCTGAATATGC 3887 Query 27330 TACACAGATCCATGGACGCATACCTAAACGATATGAGAGTTCCCACTCACGTCCCATATA 27389 ||| ||||| || |||||||| | ||| | || ||||||||||| ||||| || Sbjct 3886 AACAGCAATCCAAGGTCGCATACCCAGACGGAAGCTAAGCTCCCACTCACGACCCATGTA 3827 Query 27390 AGCATAGATGCCGATAAGGAAGTGGAAGACTACCAGTTGGAAAGGACCACCGTTATACAA 27449 | | | ||| | | |||||| | || | |||| ||||||||||||| || || Sbjct 3826 ACAAGCTACGCCAAGTAAGAAGTGTAGAACAATTAGTTCATAAGGACCACCGTTGTATAA 3767 Query 27450 CCACTCATCGAGTGATGCTGCTTCCCAGATTGGGTAGAAGTGGAGACCGATTGCATTTGA 27509 ||| ||||| | ||||| ||||||||||||||||| || || | ||| || || || Sbjct 3766 CCATTCATCAACGGATGCCGCTTCCCAGATTGGGTAAAAATGTAAACCTATAGCTGCAGA 3707 Query 27510 ACTTGGGACAACTGCACCAGAAATGATGTTGTTGCCATACATAAGTGAACCAGCAACGGG 27569 | | || | || ||||| ||||| || ||||| || || | || || || | ||| || Sbjct 3706 AGTAGGAATAATGGCACCGGAAATAATATTGTTTCCGTAAAGTAGAGACCCTGAAACAGG 3647 Query 27570 TTCACGAATACCGTCAATATCGACGGGTGGTGCTGCGATGAATGCGACAATGAA-GCAGA 27628 |||||||||||| ||||| || || || || || || ||||| || | ||| || |||| Sbjct 3646 TTCACGAATACCATCAATGTCTACTGGAGGAGCAGCAATGAAGGCAATAATAAATACAGA 3587 Query 27629 CAGTTGCTGCTAACAGTGTTGGGATCATCAGTACACCGAACCAACCAACATACAAACGGT 27688 |||||| | || | || |||||||||| ||||| ||||| |||| || | ||||| Sbjct 3586 -AGTTGCCGTCAATAAGGTAGGGATCATCAAAACACCAAACCATCCAATGTAAAGACGGT 3528 Query 27689 TGTTAGTTGATGTCACCCACTCACAGAA 27716 | | ||| || | ||| | |||||| Sbjct 3527 TTTCAGTGCTAGTTATCCAGTTACAGAA 3500 >seq309 Length=37764 Score = 452 bits (500), Expect = 5e-122 Identities = 719/1023 (70%), Gaps = 8/1023 (1%) Strand=Plus/Minus Query 23386 ATCAAAGAGCATTACCTCTTGGAAGGATTTCCTCAATTACAGGAAAGTTTTCGTGTGGTT 23445 || ||||||| || || | ||| || | |||||| | || |||||| || || | Sbjct 24137 ATTAAAGAGCGTTTCCACGTGGTAGAACCTCCTCAGGGAATATAAGGTTTTCATGAGGCT 24078 Query 23446 GGTCAATAGTCATCATCCATTCACGGAGGCCATTGTTCAACAAAATATTTTTCGTGTAGA 23505 | || || | |||||| | || | || | ||| || | ||||||||| ||||||| Sbjct 24077 GATCTTGAGCCGCCATCCAAGCGCGAATACCTTCGTTTAAGAGAATATTTTTGGTGTAGA 24018 Query 23506 AGGTCTCATACGAACCATCTTCAGCAGCACGAATCTCTTGACTCACAAAA-TCATAAGCA 23564 | |||||| | | |||||| || || ||||| || ||| || || ||||| ||| Sbjct 24017 AAGTCTCAAATTCAGGATCTTCCGCTGCGCGAATTTCCTGAGAAACGNAAGTCATAGGCA 23958 Query 23565 CGAAGATTAAGAGCAAGCCCAATGATGCCAATAGAAGAGACCCAAAGACCCATGACAGGA 23624 || || || ||||| || || | | |||| || | | ||| | ||| | || || Sbjct 23957 CGTAGGTTCAGAGCTAGACCGACTACTCCAAGAGCACTCATCCATAAACCGGTTACTGGT 23898 Query 23625 ACAAACAACATAAAGAAGTGCAACCAACGCTTATTGCTAAACGCAACCCCGAAGATTTGT 23684 ||||| ||||||||||| || |||||||| |||||| ||| |||||||| |||||||| Sbjct 23897 ACAAATAACATAAAGAAATGTAACCAACGTTTATTGGAAAAAGCAACCCCAAAGATTTGG 23838 Query 23685 GACCAAAAACGATTTGCTGTAACCATCGAATAGGTCTCCTCCTCCTGAGTGGAATCGAAC 23744 |||||||| || || || || ||||| ||||| || || || | ||||| | | || Sbjct 23837 GACCAAAAGCGGTTAGCGGTGACCATTGAATAAGTTTCTTCGGCTTGAGTTGGGTTAAAA 23778 Query 23745 GCTTTAAAAGTGTTTGCCTGTTCTCCATCTTCATACAGTGTATTCTCGACAGTAACTCCA 23804 || || || ||||| || || |||||| | | ||||| || || ||| | ||| Sbjct 23777 GCACGGAATGTATTTGCACCATCACCGTCTTCAAATAAAGTATTTTCTACGGTAGCACCA 23718 Query 23805 TGAATAGCAGAGAGAAGTGCTCCTCCCAGTATACCAGCAACTCCCATCATATGGAAGGGG 23864 ||||| || | || | || | |||| || ||| ||||||||||||||||| |||||| Sbjct 23717 TGAATGGCGCATAGCAAAGCAGCGCCCAATACACCGGCAACTCCCATCATATGAAAGGGG 23658 Query 23865 TTGAGCGTCCAGTTATGAAAGCCCTGGAGGAAGAGAAGGAACCTGAAAATCGCCGCAACA 23924 || | ||||| |||||||| || || | || || | ||| | || || || || ||| Sbjct 23657 TTCAAGGTCCAATTATGAAACCCTTGAAAAAATAGGATGAATCGAAATATAGCTGCTACA 23598 Query 23925 CCGAAACTCGGCGCAAAGAACCAAGATGACTGTCCCAAAGGATAGATGAGGAATACAGAC 23984 || ||||| || |||||||||||| ||||| || | ||||| || || |||||||| Sbjct 23597 CCAAAACTAGGTGCAAAGAACCAACCAGACTGACCTAGTGGATAAATCAGAAATACAGAA 23538 Query 23985 ACGAATACAGCAATAGGACCAGAAAAAGCAATCGCATTGTAGGGACGGATTCCAATTAGA 24044 || || |||||||| |||||||| || || || ||||| || || | | | || ||| Sbjct 23537 ACAAAAACAGCAATTGGACCAGAGAATGCGATTGCATTATAAGGTCTCAATTGAA-CAGA 23479 Query 24045 -CGTGCCAGTTCAAACTGACGTAACATAAAA-CCTATAAGTGCAAAGGCACCGTGGAGAG 24102 || || || || || ||||||||||||||| ||||| || |||| || || ||||||| Sbjct 23478 TCGAGCAAGCTCGAATTGACGTAACATAAAANCCTATTAGGCCAAAAGCTCCATGGAGAG 23419 Query 24103 CAACAAAGGACCAAAGCCCTCCAAGTTGGAGCCACCGTTGAAAGTCCCCTTGAGACTCAG 24162 ||||||| | ||| || || || | ||| ||| || ||| || ||||| | |||| Sbjct 23418 CAACAAAAGTCCACAGACCCCCCAATTGACACCAACGAGTAAAATCTCCTTGTGCTTCAG 23359 Query 24163 GACCCCAAAGTAGAAGAAGAGAATGACCCATAGCGTCAGCAGGCGTCGAGACAGCTGCCG 24222 | ||||| |||| | | ||||| | | | | |||||| || || || || || | Sbjct 23358 GCCCCCATAGTAACAATAACGAATGTGCTAAACTATTAGCAGGAGTAGAAACCGCGGCAG 23299 Query 24223 -TAAGAAAGTTAGCA-CCCTCAAGATAGGAACTAGCAAGTCCATGGGTGTACCAACTCGT 24280 ||||||| | ||| || || | ||| ||||| || | ||||||||| ||||| || Sbjct 23298 TTAAGAAA--TTGCAGCCTTCCAAATAAGAACTGGCCAATCCATGGGTATACCATGAAGT 23241 Query 24281 AACAAAAGCTGTGCCAGTAAGCCAACCGCCAATGGCAAGATAAGCAGTGGGAAGAAGTAG 24340 ||||| | ||| || || | |||||| || | || | ||| ||| |||| || | Sbjct 23240 TACAAAGGTTGTACCTGTGAACCAACCCCCTACAGCGAAATAGGCACAAGGAAAGAGCAA 23181 Query 24341 GAGTCCAGACCAACCCACAAAGACAAAGCGATCCCGTTTAACCCAGTCGTCCAAGATGTC 24400 || || ||||| || ||||| || || || |||| | |||||| |||| || || Sbjct 23180 TAGACCGGACCAGCCTACAAAAACGAAACGGTCCCTCCGTAACCAGTCATCCATAATATC 23121 Query 24401 AAA 24403 ||| Sbjct 23120 AAA 23118 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 665487437264840