Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20americanum_20[genbank_20GCA_5F900188915.1_202017-07-22] 837 sequences; 9,013,692 total letters Query= NC_020859.1 Length=175430 Score E Sequences producing significant alignments: (Bits) Value seq83 654 0.0 seq309 497 1e-135 seq750 96.9 4e-15 seq433 96.9 4e-15 >seq83 Length=41462 Score = 654 bits (724), Expect = 0.0 Identities = 740/989 (75%), Gaps = 2/989 (0%) Strand=Plus/Plus Query 165768 CTTCTGCGAATGGGTTACCAGCACAAATAACCGTCTGTATGTCGGTTGGTTTGGTACGCT 165827 |||||| | ||| | || ||||| | |||||||| || | || ||||||||| | Sbjct 3499 CTTCTGTAACTGGATAACTAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTT 3558 Query 165828 GATGATTCCAACTCTGTTGGCAGCAACTATCTGC-TTCATCGTCGCCTTCATCGCTGCTC 165886 |||||| || || | ||| | |||||| |||| || || | |||||||| ||||||| Sbjct 3559 GATGATCCCTACCTTATTGACGGCAACT-TCTGTATTTATTATTGCCTTCATTGCTGCTC 3617 Query 165887 CCCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCTCTGATGTATGGTAACA 165946 | || || ||||| || || || |||||||| || | || ||||| | || || |||| Sbjct 3618 CTCCAGTAGACATTGATGGTATTCGTGAACCTGTTTCAGGGTCTCTACTTTACGGAAACA 3677 Query 165947 ACATCATCTCTGGTGCAGTTGTTCCCTCTTCCAACGCAATTGGTCTACACTTCTATCCCA 166006 | || || || ||||| || |||| |||| || || ||| |||| || || || | Sbjct 3678 ATATTATTTCCGGTGCCATTATTCCTACTTCTGCAGCTATAGGTTTACATTTTTACCCAA 3737 Query 166007 TCTGGGAAGCCGCATCGCTTGACGAATGGCTCTATAACGGTGGTCCTTTCCAACTGGTTG 166066 |||||||||| ||||| |||| |||||| | || ||||||||||||| |||| ||| Sbjct 3738 TCTGGGAAGCGGCATCCGTTGATGAATGGTTATACAACGGTGGTCCTTATGAACTAATTG 3797 Query 166067 TCTTCCACTTCCTGATTGGCATCTATGCCTACATGGGTCGTGAGTGGGAACTGTCTTACC 166126 | | |||||| | ||||| | | |||||||||||||||||||| || | || Sbjct 3798 TTCTACACTTCTTACTTGGCGTAGCTTGTTACATGGGTCGTGAGTGGGAGCTTAGCTTCC 3857 Query 166127 GTCTAGGTATGCGTCCATGGATCTGTGTTGCTTACTCAGCACCAGTCGCTGCTGCGAGTG 166186 |||| |||||||| || ||||| |||||| || ||||| || || || ||||| | | Sbjct 3858 GTCTGGGTATGCGACCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACCG 3917 Query 166187 CAGTATTCCTAGTATATCCTTTCGGTCAAGGTAGTTTCTCTGATGCAATGCCACTCGGAA 166246 |||| ||| | | || || |||||||||| ||||| ||||||| ||||| || |||| Sbjct 3918 CAGTTTTCTTGATCTACCCAATCGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAA 3977 Query 166247 TCTCAGGAACATTCAACTACATGTTGGTCTTCCAAGCTGAGCACAATATTCTCATGCATC 166306 |||| || || ||||| | |||| | || ||||| ||||||||||| || || ||||| | Sbjct 3978 TCTCTGGTACTTTCAATTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACC 4037 Query 166307 CCTTCCATATGCTCGGCGTTGCTGGGGTATTTGGTGGCAGTTTGTTTAGTGCTATGCACG 166366 | || || ||| | ||||| ||||| ||||| || ||| | || ||||||||||| | Sbjct 4038 CATTTCACATGTTAGGCGTGGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATG 4097 Query 166367 GAAGTTTGGTTACTTCTTCTCTCGTTAGAGAGACGACTGAAACCGAATCCCAAAACTACG 166426 | ||||| |||||| | | | || || || || |||| ||||| || | | Sbjct 4098 GTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAG 4157 Query 166427 GTTACAAGTTCGGACAAGAAGAAGAAACATACAACATCGTAGCCGCTCATGGTTACTTCG 166486 |||||| ||||| ||||| |||||||| || || |||||||||||||||||||| || | Sbjct 4158 GTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCCGCTCATGGTTATTTTG 4217 Query 166487 GTCGTTTGATCTTCCAATACGCTTCATTCAACAACTCCCGCTCCTTGCACTTCTTCCTTG 166546 | || |||||||||||||| ||| ||||||||||| || || || ||||||||||| | Sbjct 4218 GCCGATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCGTTACACTTCTTCCTAG 4277 Query 166547 CTGCATGGCCTGTTGTCGGCATCTGGTTCACCGCCCTTGGCGTCTCCACGATGGCATTCA 166606 |||| |||||||| || || |||||||| ||||| | || | ||| ||||| |||| Sbjct 4278 CTGCTTGGCCTGTAGTAGGTATCTGGTTTACCGCTTTAGGTATTAGCACTATGGCTTTCA 4337 Query 166607 ACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAACA 166666 |||| || |||||||| |||||||| || | |||| ||||||||||||| | |||| Sbjct 4338 ACCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGACAGTCAGGGTCGTGTAATTAACA 4397 Query 166667 CCTGGGCAGATGTTCTTAACCGCGCTGGTCTCGGTATGGAAGTTATGCATGAGCGTAACG 166726 | ||||| ||| | | ||||| ||| || |||||||||||||||||||| ||||| | Sbjct 4398 CTTGGGCTGATATCATCAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATG 4457 Query 166727 CACACAACTTCCCCCTCGACCTCGCTGCT 166755 | || |||||||| || ||||| |||||| Sbjct 4458 CTCATAACTTCCCTCTAGACCTAGCTGCT 4486 Score = 96.9 bits (106), Expect = 4e-15 Identities = 65/73 (89%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 18128 TTCCTCAGTAGCTCAGCGGCAGAGCCATCGACTGTTAATCGATTGGTCGTAGGTTCAAAT 18187 |||||||||||||||| || ||||| ||| ||||||| ||||||||||||||||| ||| Sbjct 29242 TTCCTCAGTAGCTCAGTGGTAGAGCGGTCGGCTGTTAACCGATTGGTCGTAGGTTCGAAT 29183 Query 18188 CCTACCTGGGGAG 18200 ||||| ||||||| Sbjct 29182 CCTACTTGGGGAG 29170 >seq309 Length=37764 Score = 497 bits (550), Expect = 1e-135 Identities = 731/1024 (71%), Gaps = 12/1024 (1%) Strand=Plus/Plus Query 167014 TTTGATGTCCTCGATGACTGGCTTAAAAGGGATCGTTTTGTTTTTGTTGGCTGGTCTGGA 167073 |||||| | | ||||||||| | ||||| ||||| |||||||| |||||||| || Sbjct 23118 TTTGATATTATGGATGACTGGTTACGGAGGGACCGTTTCGTTTTTGTAGGCTGGTCCGGT 23177 Query 167074 CTTCTTCTTTTTCCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGGACTACTTTC 167133 || | || ||||| ||| ||| | ||| | || |||||| | || || || || || Sbjct 23178 CTATTGCTCTTTCCTTGTGCCTATTTCGCTGTAGGGGGTTGGTTCACAGGTACAACCTTT 23237 Query 167134 GTCACGAGTTGGTATACTCATGGACTCGC--GTCCAGTTATCTTGAGGG-TGCGAACTTT 167190 || || |||||||| |||||| | || || | |||| | || || ||| | ||| Sbjct 23238 GTAACTTCATGGTATACCCATGGATTGGCCAGTTC--TTATTTGGAAGGCTGCAA--TTT 23293 Query 167191 CTTA-CTGCGGCAGTTAGTACTCCAGCAGATTCTATGGGTCATTCTTTACTTCTTCTATG 167249 |||| |||| || ||| |||||| || || | | | ||||| ||| | | ||||| Sbjct 23294 CTTAACTGCCGCGGTTTCTACTCCTGCTAATAGTTTAGCACATTCGTTATTGTTACTATG 23353 Query 167250 GGGTCCTGAATCTCAAGGGGATTTCGTCAGGTGGCTCCAACTTGGGGGACTCTGGGCTTT 167309 ||| |||||| | ||||| ||||| | ||| ||| | ||||| || ||| |||| Sbjct 23354 GGGGCCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTGGGGGGTCTGTGGACTTT 23413 Query 167310 TGTGGCGCTCCACGGAGCCTTTGCTCTCATTGG-TTTCATGCTTCGACAGTTTGAACTTG 167368 ||| || ||||| ||||| |||| || || || ||| ||| | || || || || |||| Sbjct 23414 TGTTGCTCTCCATGGAGCTTTTGGCCTAATAGGNTTTTATGTTACGTCAATTCGAGCTTG 23473 Query 167369 CTCGC-CTGATTGGTATCCGTCCCTACAATGCTATTGCTTTCTCTGGTCCTATTGCTGTC 167427 |||| ||| | | | | || || ||||| || || ||||||||||| |||||||| Sbjct 23474 CTCGATCTGTTCAAT-TGAGACCTTATAATGCAATCGCATTCTCTGGTCCAATTGCTGTT 23532 Query 167428 TTCGTTAGCGTTTTCCTTCTCTATCCCCTCGGTCAAAGCAGCTGGTTCTTTGCCCCGTCC 167487 || ||| || || || | ||||| || ||||| | ||||||||||| || Sbjct 23533 TTTGTTTCTGTATTTCTGATTTATCCACTAGGTCAGTCTGGTTGGTTCTTTGCACCTAGT 23592 Query 167488 TTCGGAGTCGCCGCCATCTTCCGATTCCTCCTCTTCCTCCAAGGATTCCACAACTGGACA 167547 || || || || || || || |||||| |||| || | ||||| || || || ||||| Sbjct 23593 TTTGGTGTAGCAGCTATATTTCGATTCATCCTATTTTTTCAAGGGTTTCATAATTGGACC 23652 Query 167548 CTGAATCCATTTCATATGATGGGTGTAGCAGGTATCCTGGGTGGTGCATTGCTTTCTGCA 167607 |||| || |||||||||||||| || || ||| | |||| | ||| ||||| | || Sbjct 23653 TTGAACCCCTTTCATATGATGGGAGTTGCCGGTGTATTGGGCGCTGCTTTGCTATGCGCC 23712 Query 167608 ATCCATGGTGTTACAGTAGAGAATACTTTGTATGAAGATGGTGAGCAAGCAAACACTTTT 167667 || ||||||| ||| ||||| |||||||| | |||||| ||||| ||||| || || Sbjct 23713 ATTCATGGTGCTACCGTAGAAAATACTTTATTTGAAGACGGTGATGGTGCAAATACATTC 23772 Query 167668 AAGGCATTCGATTCTACTCAGGAAGAAGAGACTTATTCAATGGTTACAGCAAACCGATTC 167727 || || | | ||||| | ||||| |||||||||||||| || || ||||| || Sbjct 23773 CGTGCTTTTAACCCAACTCAAGCCGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTT 23832 Query 167728 TGGTCTCAGATCTTCGGCATTGCTTTCAGCAACAAACGCTGGCTTCATTTCTTTATGTTA 167787 ||||| || ||||| || ||||||| ||| ||||| ||| | ||||||||||||||| Sbjct 23833 TGGTCCCAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTA 23892 Query 167788 TTCGTTCCCGTTATGGGACTTTGGACATCATCGATTGGCATCATTGGTCTGGCTCTTAAT 167847 || || || || | || | |||| | |||| | | ||||| ||||| || Sbjct 23893 TTTGTACCAGTAACCGGTTTATGGATGAGTGCTCTTGGAGTAGTCGGTCTAGCTCTGAAC 23952 Query 167848 CTTCGTGCTTACGA-TTTCGTTTCTCAAGAGATCAGAGCGGCGGAGGATCCAGAGTTTGA 167906 || ||||| || || || ||||||||| || || | || ||||| ||||| || ||||| Sbjct 23953 CTACGTGCCTATGACTTNCGTTTCTCAGGAAATTCGCGCAGCGGAAGATCCTGAATTTGA 24012 Query 167907 AACTTTCTATACTAAAAACATCCTTCTGAATGAAGGTCTTCGAGCATGGTTAGCACCTAT 167966 |||||||| || ||||| || || | || |||||| |||| || ||| | || || Sbjct 24013 GACTTTCTACACCAAAAATATTCTCTTAAACGAAGGTATTCGCGCTTGGATGGCGGCTCA 24072 Query 167967 CGATCAACCTCATGAGAACTTTGTGTTCCCAGAGGAAGTTCTCCCACGAGGCAACGCACT 168026 ||||| |||||||| ||| || | ||||| ||||| ||||| ||||| || ||||| || Sbjct 24073 AGATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCT 24132 Query 168027 ATAA 168030 ||| Sbjct 24133 TTAA 24136 >seq750 Length=11203 Score = 96.9 bits (106), Expect = 4e-15 Identities = 65/73 (89%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 18128 TTCCTCAGTAGCTCAGCGGCAGAGCCATCGACTGTTAATCGATTGGTCGTAGGTTCAAAT 18187 |||||||||||||||| || ||||| ||| ||||||| ||||||||||||||||| ||| Sbjct 9070 TTCCTCAGTAGCTCAGTGGTAGAGCGGTCGGCTGTTAACCGATTGGTCGTAGGTTCGAAT 9129 Query 18188 CCTACCTGGGGAG 18200 ||||| ||||||| Sbjct 9130 CCTACTTGGGGAG 9142 >seq433 Length=22214 Score = 96.9 bits (106), Expect = 4e-15 Identities = 65/73 (89%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 18128 TTCCTCAGTAGCTCAGCGGCAGAGCCATCGACTGTTAATCGATTGGTCGTAGGTTCAAAT 18187 |||||||||||||||| || ||||| ||| ||||||| ||||||||||||||||| ||| Sbjct 4970 TTCCTCAGTAGCTCAGTGGTAGAGCGGTCGGCTGTTAACCGATTGGTCGTAGGTTCGAAT 5029 Query 18188 CCTACCTGGGGAG 18200 ||||| ||||||| Sbjct 5030 CCTACTTGGGGAG 5042 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561242127942800