Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20americanum_20[genbank_20GCA_5F900188915.1_202017-07-22] 837 sequences; 9,013,692 total letters Query= NC_020867.1 Length=44892 Score E Sequences producing significant alignments: (Bits) Value seq83 545 7e-151 >seq83 Length=41462 Score = 545 bits (604), Expect = 7e-151 Identities = 723/996 (73%), Gaps = 8/996 (1%) Strand=Plus/Plus Query 42280 TGGGATCAGTTTTGTAACTGGGTGACTTCGACTAACAACCGTCTTTATGTTGGGTGGTTT 42339 |||| || || ||||||||| | ||| ||| | ||||||||||| |||| |||||| Sbjct 3491 TGGGGTCGCTTCTGTAACTGGATAACTAGCACTGAAAACCGTCTTTACATTGGATGGTTT 3550 Query 42340 GGTGTGCTGATGATTCCCTGTCTGCTCGCTGCTACCACCTGT-TTTATTGTCGCTTTCAT 42398 ||||| ||||||| |||| || | | | | | |||| |||||| | || ||||| Sbjct 3551 GGTGTTTTGATGAT-CCCTACCTTATTGACGGCAACTTCTGTATTTATTATTGCCTTCAT 3609 Query 42399 TGCTGCCCCTCCGGTAGACATTGATGGCATTCGTGAACCTGTCTCTGGCTCTCTTCTGTA 42458 |||||| ||||| |||||||||||||| |||||||||||||| || || ||||| || || Sbjct 3610 TGCTGCTCCTCCAGTAGACATTGATGGTATTCGTGAACCTGTTTCAGGGTCTCTACTTTA 3669 Query 42459 TGGCAACAACATCATCTCTGGTGCCGTCGTGCCTAGCAGTAACGCAATTGGACTACATTT 42518 || ||||| || || || |||||| | | |||| | || || || ||||||| Sbjct 3670 CGGAAACAATATTATTTCCGGTGCCATTATTCCTACTTCTGCAGCTATAGGTTTACATTT 3729 Query 42519 GTATTCGATCTGGGAAGCCAATACCCTTGACGAATGGCTCTACAATGGCGGACCTTATCA 42578 || | ||||||||||| || |||| |||||| | ||||| || || |||||| | Sbjct 3730 TTACCCAATCTGGGAAGCGGCATCCGTTGATGAATGGTTATACAACGGTGGTCCTTATGA 3789 Query 42579 GCTCGTCGTGTTCCACTTCCTTATCG--GTATCTTCTCTTACTTGGGACGCGAATGGGAA 42636 || | || | |||||| | | | ||| || | |||| |||| || || ||||| Sbjct 3790 ACTAATTGTTCTACACTTCTTACTTGGCGTAGCT--TGTTACATGGGTCGTGAGTGGGAG 3847 Query 42637 CTTTCGTACCGACTTGGGATGAGGCCCTGGATCTTTGTTGCTTACTCTGCCCCTGTGGCT 42696 ||| | ||| || || ||| | || ||||| |||||| || || || ||||| || Sbjct 3848 CTTAGCTTCCGTCTGGGTATGCGACCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCA 3907 Query 42697 GCAGCGACTGCAGTCTTCCTTGTCTATCCATTTGGGCAAGGTTCTTTTTCAGATGGAATG 42756 || || || ||||| ||| | |||| ||| | || ||||| |||||| ||||| ||| Sbjct 3908 GCTGCTACCGCAGTTTTCTTGATCTACCCAATCGGTCAAGGAAGTTTTTCTGATGGTATG 3967 Query 42757 CCTCTTGGCATTTCCGGTACGTTCAACTTCATGTTGGTCTTCCAGGCTGAACATAACATT 42816 ||||| || || || ||||| ||||| |||||| | || ||||||||||| || ||||| Sbjct 3968 CCTCTAGGAATCTCTGGTACTTTCAATTTCATGATTGTATTCCAGGCTGAGCACAACATC 4027 Query 42817 CTTATGCATCCTTTCCATATGCTTGGTGTTGCCGGCGTATTTGGTGGGTCGTTGTTCTCA 42876 |||||||| || || || ||| | || || || || ||||| || || || | ||| Sbjct 4028 CTTATGCACCCATTTCACATGTTAGGCGTGGCTGGTGTATTCGGCGGCTCCCTATTCAGT 4087 Query 42877 GCTATGCATGGTAGTCTTGTCACCTCTTCTCTTGTGCGTGAAACGACTGAAAACGAAAGC 42936 |||||||||||| | || || ||| | | | | ||||| || ||||| ||| Sbjct 4088 GCTATGCATGGTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCT 4147 Query 42937 CAAAATTATGGCTACAAGTTCGGTCAAGAGGAGGAGACTTATAACATTGTTGCAGCGCAT 42996 ||| | || |||| |||||||||||||| || |||||||| || || || || ||| Sbjct 4148 GCTAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCCGCTCAT 4207 Query 42997 GGTTACTTTGGACGGCTTATCTTCCAATATGCGTCGTTT-AATAATAGTCGCTCTTTGCA 43055 ||||| ||||| || | |||||||||||||| | |||| || || ||| || || || Sbjct 4208 GGTTATTTTGGCCGATTGATCTTCCAATATGC-TAGTTTCAACAACTCTCGTTCGTTACA 4266 Query 43056 CTTCTTTCTTGCCGCTTGGCCCGTTGTGGGGATTTGGTTCACTTCTCTTGGCGTCAGTAC 43115 |||||| || || |||||||| || || || || ||||| || || | || | || || Sbjct 4267 CTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATCTGGTTTACCGCTTTAGGTATTAGCAC 4326 Query 43116 TATGGCGTTTAACTTGAATGGTTTTAACTTTAACCAATCACTTGTTGATAATCAGAATCA 43175 |||||| || ||| | |||||||| || || |||||||| | ||||| | |||| || Sbjct 4327 TATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGACAGTCAGGGTCG 4386 Query 43176 TGTCATCCCTACTTGGGCTGATATTTTGAATCGTGCCAACCTTGGCTTTGAGGTGATGCA 43235 ||| || |||||||||||||| | || ||||| |||||||| | || || ||||| Sbjct 4387 TGTAATTAACACTTGGGCTGATATCATCAACCGTGCTAACCTTGGTATGGAAGTTATGCA 4446 Query 43236 CGAGCGGAATGCACATAACTTCCCGCTTGATCTTGC 43271 || || ||||| ||||||||||| || || || || Sbjct 4447 TGAACGTAATGCTCATAACTTCCCTCTAGACCTAGC 4482 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143531373373676