Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20americanum_20[genbank_20GCA_5F900188915.1_202017-07-22] 837 sequences; 9,013,692 total letters Query= NC_020875.1 Length=182801 Score E Sequences producing significant alignments: (Bits) Value seq83 556 2e-153 >seq83 Length=41462 Score = 556 bits (616), Expect = 2e-153 Identities = 715/986 (73%), Gaps = 0/986 (0%) Strand=Plus/Plus Query 154970 TCTGCCAGTGGGTAACTTCTGCTGACAACCGCATCTATGTCGGTTGGTTCGGTGTTCTTA 155029 |||| | ||| ||||| |||| ||||| | || | || ||||| |||||| | | Sbjct 3501 TCTGTAACTGGATAACTAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTGA 3560 Query 155030 TGATCCCTTGCCTCCTCGCTGCTGCTACATGCTTCATTGTCGCCTTCATTGCTGCACCTC 155089 |||||||| | | | | || || | || ||| | |||||||||||||| |||| Sbjct 3561 TGATCCCTACCTTATTGACGGCAACTTCTGTATTTATTATTGCCTTCATTGCTGCTCCTC 3620 Query 155090 CTGTAGACATTGATGGTATTCGTGAACCCGTCGCTGGTTCTTTAATGTATGGTAACAACA 155149 | |||||||||||||||||||||||||| || | || ||| || | || || ||||| | Sbjct 3621 CAGTAGACATTGATGGTATTCGTGAACCTGTTTCAGGGTCTCTACTTTACGGAAACAATA 3680 Query 155150 TCATCTCTGGTGCTGTTGTCCCTAGTTCAAACGCAATTGGTCTCCACTTCTATCCTATTT 155209 | || || ||||| || | |||| ||| || || ||| | || || || || || | Sbjct 3681 TTATTTCCGGTGCCATTATTCCTACTTCTGCAGCTATAGGTTTACATTTTTACCCAATCT 3740 Query 155210 GGGAAGCAGCAACTCTTGATGAGTGGTTGTACAATGGTGGTCCTTTCCAACTTGTAGTCT 155269 ||||||| ||| | ||||||| ||||| ||||| |||||||||| |||| | || Sbjct 3741 GGGAAGCGGCATCCGTTGATGAATGGTTATACAACGGTGGTCCTTATGAACTAATTGTTC 3800 Query 155270 TCCACTTCCTTATCGGAATCACAGCATACTGTGGTCGTCAGTGGGAACTTTCTTACCGTC 155329 | |||||| | | || | | ||| |||||| ||||||| ||| | ||||| Sbjct 3801 TACACTTCTTACTTGGCGTAGCTTGTTACATGGGTCGTGAGTGGGAGCTTAGCTTCCGTC 3860 Query 155330 TTGGCATGCGTCCTTGGATCTGTGTTGCATACTCTGCACCAGTATCTGCTGCGTTCGCTG 155389 | || ||||| |||||||| ||||||||| || || || || | ||||| ||| | Sbjct 3861 TGGGTATGCGACCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACCGCAG 3920 Query 155390 TATTCCTTGTTTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCGATGCCTCTTGGTATCT 155449 | ||| | | || || |||||||||| ||| ||||||| |||||||| || |||| Sbjct 3921 TTTTCTTGATCTACCCAATCGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATCT 3980 Query 155450 CTGGTACTTTTAACTATATGTTCGTGTTCCAAGCAGAACACAATATCCTTATGCACCCCT 155509 |||||||||| || | ||| | || ||||| || || ||||| |||||||||||||| | Sbjct 3981 CTGGTACTTTCAATTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCCAT 4040 Query 155510 TCCACATGCTTGGAGTAGCAGGTGTGTTCGGTGGATCTCTTTTCTCTGCTATGCACGGTT 155569 | |||||| | || || || ||||| ||||| || || || ||| ||||||||| |||| Sbjct 4041 TTCACATGTTAGGCGTGGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTT 4100 Query 155570 CATTGGTGACATCTTCACTAATCCGTGAAACTACTGAGCAAGAGTCTCAGAACTATGGTT 155629 | ||||| || ||| | ||| | ||||| || || | || ||| || | |||| Sbjct 4101 CCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTT 4160 Query 155630 ACAAGTTCGGACAAGAAGAAGAAACTTATAACATTGTTGCTGCTCATGGATACTTCGGTC 155689 ||| ||||| ||||| |||||||||||||| || || || |||||||| || || || | Sbjct 4161 ACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCCGCTCATGGTTATTTTGGCC 4220 Query 155690 GTCTTATCTTCCAGTATGCATCCTTCAACAACTCAAGAAGTCTTCACTTCTTCCTTGCTG 155749 | | |||||||| ||||| ||||||||||| | | ||||||||||| |||| Sbjct 4221 GATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCGTTACACTTCTTCCTAGCTG 4280 Query 155750 CATGGCCTGTGGTCTGCATCTGGGCAACTGCTATGGGTGTGTCAACGATGGCATTCAACC 155809 | |||||||| || | |||||| || ||| | ||| | || ||||| ||||||| Sbjct 4281 CTTGGCCTGTAGTAGGTATCTGGTTTACCGCTTTAGGTATTAGCACTATGGCTTTCAACC 4340 Query 155810 TTAACGGTTTCAACTTCAACCAGTCTGTAGTAGACGCTAGTGGTAAAGTCATCCCTACAT 155869 | || |||||||| |||||||| |||||||| ||| | ||| || || || | Sbjct 4341 TAAATGGTTTCAATTTCAACCAATCTGTAGTTGACAGTCAGGGTCGTGTAATTAACACTT 4400 Query 155870 GGGCAGACATTCTTAACCGCGCTGGTCTTGGTATGGAAGTAATGCACGAGCGTAACGCTC 155929 |||| || || | ||||| ||| |||||||||||||| ||||| || ||||| |||| Sbjct 4401 GGGCTGATATCATCAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTC 4460 Query 155930 ACAACTTCCCTCTTGACCTTGCTGCT 155955 | ||||||||||| ||||| |||||| Sbjct 4461 ATAACTTCCCTCTAGACCTAGCTGCT 4486 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 584829081161720