Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20americanum_20[genbank_20GCA_5F900188915.1_202017-07-22] 837 sequences; 9,013,692 total letters Query= NC_021071.1 Length=177211 Score E Sequences producing significant alignments: (Bits) Value seq83 583 1e-161 >seq83 Length=41462 Score = 583 bits (646), Expect = 1e-161 Identities = 700/949 (74%), Gaps = 4/949 (0%) Strand=Plus/Minus Query 67358 AGCAGCAAGGTCAAGAGGGAAGTTGTGAGCGTTACGCTCGTGCATAACTTCCATTCCAAG 67417 |||||| ||||| ||||||||||| ||||| ||||| || |||||||||||||| ||||| Sbjct 4486 AGCAGCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAG 4427 Query 67418 TCCTGCTCTGTTAAGGATGTCTGCCCAAGTAGGAATCACTTTACCACCTGC--GTCAACG 67475 || | ||| | ||| || |||||||| ||| || ||| ||| |||||| Sbjct 4426 GTTAGCACGGTTGATGATATCAGCCCAAGTGTTAATTACACGACC--CTGACTGTCAACT 4369 Query 67476 ACGGATTGGTTGAAGTTGAAACCGTTGAGGTTGAATGCCATAGTTGACACACCCATTGCA 67535 || ||||||||||| |||||||| || |||||||| |||||||| | ||| | || Sbjct 4368 ACAGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTAATACCTAAAGCG 4309 Query 67536 GTGAACCAGATGCAGACCACAGGGAATGCAGCAAGGAAGAAGTGAAGACTTCTTGAGTTG 67595 || |||||||| | || ||||| | ||||| ||||||||||| | | |||||| Sbjct 4308 GTAAACCAGATACCTACTACAGGCCAAGCAGCTAGGAAGAAGTGTAACGAACGAGAGTTG 4249 Query 67596 TTGAAAGATGCATACTGGAAGATCAAGCGACCGAAGTATCCATGAGCAGCAACAATGTTG 67655 |||||| ||||| ||||||||||| || || || || |||||||| || || || || Sbjct 4248 TTGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCGGCTACGATATTA 4189 Query 67656 TAAGTCTCTTCTTCTTGTCCGAACTTGTAACCGTAGTTCTGTGACTCTTGCTCAGTAGTT 67715 ||||| ||||| ||||| ||||| ||||||| | || || || | || || ||| Sbjct 4188 TAAGTTTCTTCCTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTT 4129 Query 67716 TCTCTGATAAGAGAAGAAGTAACAAGAGAACCGTGCATAGCACTAAAGAGTGAACCACCG 67775 || ||||| | | |||||| || | ||||| ||||||||||| || || || || ||| Sbjct 4128 TCCCTGATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTGAATAGGGAGCCGCCG 4069 Query 67776 AATACACCTGCTACTCCAAGCATATGGAATGGGTGCATAAGGATGTTGTGCTCTGCTTGG 67835 |||||||| || || || | ||| || |||||||||||||||||||||||||| || ||| Sbjct 4068 AATACACCAGCCACGCCTAACATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCCTGG 4009 Query 67836 AACACGAACATGTAGTTAAAAGTACCAGAAATACCAAGAGGCATTGCGTCAGAGAAAGAA 67895 || || | |||| | || ||||||||||| || || |||||||| | ||||| ||| Sbjct 4008 AATACAATCATGAAATTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGAAAAACTT 3949 Query 67896 CCTTGACCGAAAGGATAGACCAAGAACACAGCGAATGCTGCAGACACTGGAGCAGAGTAT 67955 |||||||||| || |||| |||||| || ||| || || | || ||||| || ||| Sbjct 3948 CCTTGACCGATTGGGTAGATCAAGAAAACTGCGGTAGCAGCTGCAACAGGAGCTGAATAT 3889 Query 67956 GCTACACAGATCCAAGGACGCATACCAAGACGGTAAGAAAGTTCCCACTGACGACCACAG 68015 || ||| |||||||| |||||||| |||||| | ||| ||||||| |||||| | Sbjct 3888 GCAACAGCAATCCAAGGTCGCATACCCAGACGGAAGCTAAGCTCCCACTCACGACCCATG 3829 Query 68016 TATGCTGTGATTCCGATAAGGAAGTGGAAGACTACAAGTTGGAAAGGTCCACCATTATAC 68075 || | | || | | |||||| | || | |||| |||| ||||| || || Sbjct 3828 TAACAAGCTACGCCAAGTAAGAAGTGTAGAACAATTAGTTCATAAGGACCACCGTTGTAT 3769 Query 68076 AACCACTCATCTAGAGTTGCTGCTTCCCAGATAGGATAGAAGTGAAGACCGATTGCGTTT 68135 ||||| ||||| | | ||| ||||||||||| || || || || | ||| || || Sbjct 3768 AACCATTCATCAACGGATGCCGCTTCCCAGATTGGGTAAAAATGTAAACCTATAGCTGCA 3709 Query 68136 GAACTAGGAACAACAGCACCAGAAATGATGTTGTTACCGTACATGAGCGAACCTGCAACA 68195 ||| |||||| || ||||| ||||| || ||||| ||||| | || || |||| |||| Sbjct 3708 GAAGTAGGAATAATGGCACCGGAAATAATATTGTTTCCGTAAAGTAGAGACCCTGAAACA 3649 Query 68196 GGTTCTCTGATACCATCGATATCAACTGGAGGTGCTGCAATGAATGCAATGATGAAGCAA 68255 ||||| | |||||||| || || |||||||| || |||||||| ||||| || || | Sbjct 3648 GGTTCACGAATACCATCAATGTCTACTGGAGGAGCAGCAATGAAGGCAATAATAAATACA 3589 Query 68256 GTTGCTGCTGCGAGCAAGCAAGGAATCATCAACACACCGAACCAACCAA 68304 | | ||| | | ||| ||| |||||||| ||||| ||||| |||| Sbjct 3588 GAAGTTGCCGTCAATAAGGTAGGGATCATCAAAACACCAAACCATCCAA 3540 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 566941268314920