Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20americanum_20[genbank_20GCA_5F900188915.1_202017-07-22] 837 sequences; 9,013,692 total letters Query= NC_021072.1 Length=178807 Score E Sequences producing significant alignments: (Bits) Value seq83 708 0.0 seq309 538 4e-148 seq433 98.7 1e-15 seq750 95.1 1e-14 >seq83 Length=41462 Score = 708 bits (784), Expect = 0.0 Identities = 756/991 (76%), Gaps = 8/991 (1%) Strand=Plus/Minus Query 67839 AGCAGCAAGGTCGAGAGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATACCCAA 67898 |||||| ||||| ||||||||||| || || ||||| |||||||||||||||||||| | Sbjct 4486 AGCAGCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAG 4427 Query 67899 ACCAGCGCGGTTGAGAACGTCTGCCCAGGTAGGCAGAACCTTACCAGAACTATCAAGGAT 67958 ||| ||||||| | || ||||| || | || ||| ||| |||| | Sbjct 4426 GTTAGCACGGTTGATGATATCAGCCCAAGTGTTAATTACACGACCCTGACTGTCAACTAC 4367 Query 67959 AGACTGGTTGAAGTTGAAACCATTCAGGTTGAATGCCATGGTGCTAACACCAAGTGCAGT 68018 ||| |||||||| ||||||||||| |||||||| ||||| ||||||| ||| | || || Sbjct 4366 AGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTAATACCTAAAGCGGT 4307 Query 68019 GAACCAGATACCAACGACAGGCCATGCAGCAAGGAAGAAGTGCAGCGAACGGGAGTTGTT 68078 ||||||||||| || |||||||| ||||| ||||||||||| | |||||| |||||||| Sbjct 4306 AAACCAGATACCTACTACAGGCCAAGCAGCTAGGAAGAAGTGTAACGAACGAGAGTTGTT 4247 Query 68079 GAACGATGCATACTGGAAGATCAGACGACCGAAGTATCCATGTGCAGCAACAATGTTGTA 68138 ||| ||||| |||||||||| || || || || ||||| || || || || || || Sbjct 4246 GAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCGGCTACGATATTATA 4187 Query 68139 AGTCTCTTCTTCTTGACCGAACTTGTAACCATAGTTCTGGGACTCAGTTTCAGTGGTTTC 68198 ||| ||||| ||||||||||| ||||||| | || || ||| |||| |||||||| Sbjct 4186 AGTTTCTTCCTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTC 4127 Query 68199 ACGAACCAGTGAAGAAGTAACCAGGGAACCATGCATTGCACTGAACAGAGATCCACCAAA 68258 | | || |||||| |||| |||||||||||| |||||||| || || || || || Sbjct 4126 CCTGATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTGAATAGGGAGCCGCCGAA 4067 Query 68259 TACGCCAGCAACGCCGAGCATATGGAAGGGGTGCATCAGGATGTTGTGCTCTGCTTGGAA 68318 ||| ||||| ||||| | ||| || || |||||||| |||||||||||||| || ||||| Sbjct 4066 TACACCAGCCACGCCTAACATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAA 4007 Query 68319 CACCAGCATGTAGTTGAAAGTACCAGAAATGCCGAGAGGCATTGCGTCAGAGAACGAACC 68378 || | |||| | |||||||||||||| || || |||||||| | ||||| || || Sbjct 4006 TACAATCATGAAATTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGAAAAACTTCC 3947 Query 68379 TTGACCGAAAGGATAGACCAGGAAGACTGCGGATGCTGCTGCAACAGGTGCAGAGTATGC 68438 |||||||| || |||| || ||| ||||||| || ||||||||||| || || ||||| Sbjct 3946 TTGACCGATTGGGTAGATCAAGAAAACTGCGGTAGCAGCTGCAACAGGAGCTGAATATGC 3887 Query 68439 AACACAGATCCAAGGACGCATACCAAGACGATAGGAAAGTTCCCATTCACGTCCCATGTA 68498 |||| |||||||| |||||||| ||||| || ||| ||||| ||||| |||||||| Sbjct 3886 AACAGCAATCCAAGGTCGCATACCCAGACGGAAGCTAAGCTCCCACTCACGACCCATGTA 3827 Query 68499 TGCAAAGATA--CCAATCAGGAAGTGAAAGATTACGAGTTGGAAAGGACCACCATTGTAC 68556 ||| || |||| | |||||| | | | |||| |||||||||| ||||| Sbjct 3826 --ACAAGCTACGCCAAGTAAGAAGTGTAGAACAATTAGTTCATAAGGACCACCGTTGTAT 3769 Query 68557 AACCACTCATCAAGGGTTGCTGCTTCCCAAATGGGATAAAAGTGAAGACCAATTGCATTT 68616 ||||| ||||||| || ||| |||||||| || || ||||| || | ||| || || Sbjct 3768 AACCATTCATCAACGGATGCCGCTTCCCAGATTGGGTAAAAATGTAAACCTATAGCTGCA 3709 Query 68617 GAACTAGGAACAACAGCACCAGAAATGATGTTGTTACCATACAGAAGTGAACCAGCAACA 68676 ||| |||||| || ||||| ||||| || ||||| || || || || || || | |||| Sbjct 3708 GAAGTAGGAATAATGGCACCGGAAATAATATTGTTTCCGTAAAGTAGAGACCCTGAAACA 3649 Query 68677 GGTTCACGAATACCATCGATGTCCACAGGGGGAGCAGCGATGAAGGCGACGATGAA-ACA 68735 ||||||||||||||||| ||||| || || |||||||| |||||||| | || || ||| Sbjct 3648 GGTTCACGAATACCATCAATGTCTACTGGAGGAGCAGCAATGAAGGCAATAATAAATACA 3589 Query 68736 GATGGTTGCTG-CAAGCAGCGTAGGGATCATCAGGACGCCGAACCAACCAACGTAAAGGC 68794 || ||||| | ||| || ||||||||||||| || || ||||| |||| |||||| | Sbjct 3588 GA-AGTTGCCGTCAATAAG-GTAGGGATCATCAAAACACCAAACCATCCAATGTAAAGAC 3531 Query 68795 GGTTCTCTGTGGAAGTCACCCATTCGCAGAA 68825 |||| || ||| ||| | ||| | ||||| Sbjct 3530 GGTTTTCAGTGCTAGTTATCCAGTTACAGAA 3500 Score = 98.7 bits (108), Expect = 1e-15 Identities = 72/83 (87%), Gaps = 2/83 (2%) Strand=Plus/Plus Query 35500 CAATCATATAACTCCCCAGGTAGGATTTGAACCTACGACCAATCGATTAACAGTCGATAG 35559 |||||| || ||||||| |||||||| ||||||||||||||||| ||||||| ||| | Sbjct 29161 CAATCAAAT--CTCCCCAAGTAGGATTCGAACCTACGACCAATCGGTTAACAGCCGACCG 29218 Query 35560 CTCTGCCGCTGAGCTACTGAGGA 35582 |||| || ||||||||||||||| Sbjct 29219 CTCTACCACTGAGCTACTGAGGA 29241 >seq309 Length=37764 Score = 538 bits (596), Expect = 4e-148 Identities = 730/1010 (72%), Gaps = 6/1010 (1%) Strand=Plus/Minus Query 66586 ATTAAAGTGCATTACCACGGGGCAGAACTTCTTCTGGGAATACAAAGTTTTCATGCGGTT 66645 ||||||| || || ||||| || ||||| || || ||||||| || ||||||||| || | Sbjct 24137 ATTAAAGAGCGTTTCCACGTGGTAGAACCTCCTCAGGGAATATAAGGTTTTCATGAGGCT 24078 Query 66646 GATCGATAGGTGCCAACCATGCACGAAGACCTTCATTCAATAGAATGTTCTTTGTGTAGA 66705 |||| || |||| ||| || |||| |||||| || || ||||| || || ||||||| Sbjct 24077 GATCTTGAGCCGCCATCCAAGCGCGAATACCTTCGTTTAAGAGAATATTTTTGGTGTAGA 24018 Query 66706 ACGTCTCGAACTCTGGGTCTTCTGCTGCTCTGATCTCTTGGGATAC-AAAGTCATAAGCA 66764 | ||||| || || || ||||| ||||| | || || || || || |||||||| ||| Sbjct 24017 AAGTCTCAAATTCAGGATCTTCCGCTGCGCGAATTTCCTGAGAAACGNAAGTCATAGGCA 23958 Query 66765 CGAAGGTTGAGAGCAAGACCAATAATACCGATGGAACTTGTCCAAAGACCCATAACAGGA 66824 || ||||| ||||| ||||| | | || | | ||| |||| | ||| | || || Sbjct 23957 CGTAGGTTCAGAGCTAGACCGACTACTCCAAGAGCACTCATCCATAAACCGGTTACTGGT 23898 Query 66825 ACAAACAACATAAAGAAATGCAACCACCTCTTATTGCTAAACGCAATACCAAAGATCTGA 66884 ||||| |||||||||||||| ||||| | |||||| ||| |||| |||||||| || Sbjct 23897 ACAAATAACATAAAGAAATGTAACCAACGTTTATTGGAAAAAGCAACCCCAAAGATTTGG 23838 Query 66885 GACCAGAAGCGGTTTGCAGTAACCATTGAGTAAGTTTCTTCCTCTTGAGTAGAGTCGAAT 66944 ||||| |||||||| || || |||||||| ||||||||||| ||||||| | || || Sbjct 23837 GACCAAAAGCGGTTAGCGGTGACCATTGAATAAGTTTCTTCGGCTTGAGTTGGGTTAAAA 23778 Query 66945 GCTTTGAAAGTGTTTGCTTGTTCACCATCTTCATACAGAGTATTCTCTACTGTAACACCA 67004 || ||| || ||||| ||||| |||||| | | |||||| ||||| ||| ||||| Sbjct 23777 GCACGGAATGTATTTGCACCATCACCGTCTTCAAATAAAGTATTTTCTACGGTAGCACCA 23718 Query 67005 TGAATGGCAGAAAGCAATGCACCACCCAGGATACCTGCTACACCCATCATATGAAACGGG 67064 |||||||| | ||||| ||| | |||| | ||| || || |||||||||||||| ||| Sbjct 23717 TGAATGGCGCATAGCAAAGCAGCGCCCAATACACCGGCAACTCCCATCATATGAAAGGGG 23658 Query 67065 TTCAAGGTCCAGTTATGGAATCCTTGTAGGAAGAGAAGGAATCGAAAGATTGCTGAGACC 67124 ||||||||||| ||||| || ||||| | || || | ||||||||| || |||| || Sbjct 23657 TTCAAGGTCCAATTATGAAACCCTTGAAAAAATAGGATGAATCGAAATATAGCTGCTACA 23598 Query 67125 CCGAAAGATGGAGCGAAAAACCAACTCGATTGACCCAGAGGGTAGATGAGAAAGACACTA 67184 || ||| || || || ||||||| || ||||| || || || || ||||| ||| | Sbjct 23597 CCAAAACTAGGTGCAAAGAACCAACCAGACTGACCTAGTGGATAAATCAGAAATACAGAA 23538 Query 67185 ACAAAAACAGCGATAGGACCAGAGAACGCAATAGCATTGTAGGGACGGATACCGATGAGA 67244 ||||||||||| || ||||||||||| || || ||||| || || | | | || ||| Sbjct 23537 ACAAAAACAGCAATTGGACCAGAGAATGCGATTGCATTATAAGGTCTCA-ATTGAACAGA 23479 Query 67245 -CGTGCCAGTTCAAACTGGCGAAGCATGAAA-CCAATTAGAGCGAAAGCCCCGTGGAGCG 67302 || || || || || || || | ||| ||| || ||||| | ||||| || ||||| | Sbjct 23478 TCGAGCAAGCTCGAATTGACGTAACATAAAANCCTATTAGGCCAAAAGCTCCATGGAGAG 23419 Query 67303 CCACAAAATTCCAGAGTCCTCCAAGTTGGATCCAGCGGACGAAATCCCCCTGAGACTCAG 67362 | |||||| |||| || || || | ||| ||| || ||||| || || | |||| Sbjct 23418 CAACAAAAGTCCACAGACCCCCCAATTGACACCAACGAGTAAAATCTCCTTGTGCTTCAG 23359 Query 67363 GACCCCAAAGTAGAAGAAGAGAATGACCCATAGCATCAGCAGGCGTTGACACAGCCGCTG 67422 | ||||| |||| | | ||||| | | | || |||||| || || || || || | Sbjct 23358 GCCCCCATAGTAACAATAACGAATGTGCTAAACTATTAGCAGGAGTAGAAACCGCGGCAG 23299 Query 67423 TGAGAAAATTAGCA-CCCTCAAGATAACTAGACGCGAGTCCGTGAGTGTACCAGCTTGTG 67481 | | ||||| ||| || || | |||| | || | ||| || || ||||| || Sbjct 23298 TTAAGAAATT-GCAGCCTTCCAAATAAGAACTGGCCAATCCATGGGTATACCATGAAGTT 23240 Query 67482 ACAAACGTAGTACCAGTAAGCCAGCCACCAATTGCCATATAAGCAGTGGGAAAAAGAAGT 67541 ||||| || ||||| || | ||| || || | || | ||| ||| ||||| || | | Sbjct 23239 ACAAAGGTTGTACCTGTGAACCAACCCCCTACAGCGAAATAGGCACAAGGAAAGAGCAAT 23180 Query 67542 AGTCCAGACCAACCCACAAAGACAAAGCGATCTCGTTTAAGCCAGTCATC 67591 || || ||||| || ||||| || || || || | | ||||||||| Sbjct 23179 AGACCGGACCAGCCTACAAAAACGAAACGGTCCCTCCGTAACCAGTCATC 23130 >seq433 Length=22214 Score = 98.7 bits (108), Expect = 1e-15 Identities = 72/83 (87%), Gaps = 2/83 (2%) Strand=Plus/Minus Query 35500 CAATCATATAACTCCCCAGGTAGGATTTGAACCTACGACCAATCGATTAACAGTCGATAG 35559 |||||| || ||||||| |||||||| ||||||||||||||||| ||||||| ||| | Sbjct 5051 CAATCAAAT--CTCCCCAAGTAGGATTCGAACCTACGACCAATCGGTTAACAGCCGACCG 4994 Query 35560 CTCTGCCGCTGAGCTACTGAGGA 35582 |||| || ||||||||||||||| Sbjct 4993 CTCTACCACTGAGCTACTGAGGA 4971 >seq750 Length=11203 Score = 95.1 bits (104), Expect = 1e-14 Identities = 69/80 (86%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 35503 TCATATAACTCCCCAGGTAGGATTTGAACCTACGACCAATCGATTAACAGTCGATAGCTC 35562 ||| | | ||||||| |||||||| ||||||||||||||||| ||||||| ||| |||| Sbjct 9150 TCAAAAATCTCCCCAAGTAGGATTCGAACCTACGACCAATCGGTTAACAGCCGACCGCTC 9091 Query 35563 TGCCGCTGAGCTACTGAGGA 35582 | || ||||||||||||||| Sbjct 9090 TACCACTGAGCTACTGAGGA 9071 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 572048414880840