Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20americanum_20[genbank_20GCA_5F900188915.1_202017-07-22] 837 sequences; 9,013,692 total letters Query= NC_021530.1 Length=171407 Score E Sequences producing significant alignments: (Bits) Value seq83 618 5e-172 seq309 471 5e-128 >seq83 Length=41462 Score = 618 bits (684), Expect = 5e-172 Identities = 737/991 (74%), Gaps = 8/991 (1%) Strand=Plus/Plus Query 157580 TTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACTG 157639 ||||| | ||| ||||| || | ||||| || || | || ||||| || || || Sbjct 3500 TTCTGTAACTGGATAACTAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTG 3559 Query 157640 ATGATTCCAACTCTGTTGGCAGCAACCATCTGT-TTCATCGTCGCCTTCGTCGCTGCTCC 157698 ||||| || || | ||| | ||||| ||||| || || | |||||| | |||||||| Sbjct 3560 ATGATCCCTACCTTATTGACGGCAACT-TCTGTATTTATTATTGCCTTCATTGCTGCTCC 3618 Query 157699 CCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACAA 157758 || || ||||| || || || |||||||| || | || || || | || || ||||| Sbjct 3619 TCCAGTAGACATTGATGGTATTCGTGAACCTGTTTCAGGGTCTCTACTTTACGGAAACAA 3678 Query 157759 CATCATCTCTGGTGCAGTTGTACCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCAT 157818 || || || ||||| || | || |||| || || ||| | || || || || || Sbjct 3679 TATTATTTCCGGTGCCATTATTCCTACTTCTGCAGCTATAGGTTTACATTTTTACCCAAT 3738 Query 157819 CTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAGT 157878 ||||||||| ||||| ||||||| ||| | || ||||||||||||| |||| | || Sbjct 3739 CTGGGAAGCGGCATCCGTTGATGAATGGTTATACAACGGTGGTCCTTATGAACTAATTGT 3798 Query 157879 ATTTCACTTCCTCATTG--GTATCTATGCATACATGGGACGTGAGTGGGAACTTTCATAC 157936 | |||||| | ||| ||| || || |||||||| ||||||||||| ||| | | Sbjct 3799 TCTACACTTCTTACTTGGCGTAGCT-TG-TTACATGGGTCGTGAGTGGGAGCTTAGCTTC 3856 Query 157937 CGTTTAGGTATGCGCCCCTGGATCTGTGTAGCATATTCTGCTCCAGTCGCTGCAGCATCT 157996 ||| | |||||||| || ||||| ||| |||||||| ||||| || || || || | Sbjct 3857 CGTCTGGGTATGCGACCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACC 3916 Query 157997 GCTGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCCGATGCTATGCCTCTTGGT 158056 || || ||| | |||| || |||||||||| ||| || |||| ||||||||| || Sbjct 3917 GCAGTTTTCTTGATCTACCCAATCGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGA 3976 Query 158057 ATCTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAACACAACATCCTTATGCAC 158116 |||||||||||||| || | |||| |||||||||| || || |||||||||||||||||| Sbjct 3977 ATCTCTGGTACTTTCAATTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCAC 4036 Query 158117 CCGTTCCATATGCTCGGTGTTGCTGGGGTATTCGGTGGATCTCTTTTCTCTGCTATGCAC 158176 || || || ||| | || || ||||| |||||||| || || || ||| ||||||||| Sbjct 4037 CCATTTCACATGTTAGGCGTGGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCAT 4096 Query 158177 GGAAGTCTCGTTACTTCCTCACTCGTTC-GTGAAACGACTGAAACAGAGTCACAGAACTA 158235 || | || |||| || | | || | ||||| || |||| || || || | Sbjct 4097 GGTTCCTTGGTAACTT-CTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGA 4155 Query 158236 CGGTTACAAGTTCGGTCAAGAGGAAGAGACCTATAACATCGTCGCAGCACATGGCTACTT 158295 ||||||| ||||||||||||||||| || ||||| ||||| || || ||||| || || Sbjct 4156 AGGTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCCGCTCATGGTTATTT 4215 Query 158296 CGGTCGTTTGATCTTCCAATACGCTTCATTCAACAACTCCCGTTCCTTGCACTTCTTCCT 158355 || || |||||||||||||| ||| ||||||||||| ||||| || ||||||||||| Sbjct 4216 TGGCCGATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCGTTACACTTCTTCCT 4275 Query 158356 TGCTGCATGGCCTGTTGTCGGCATCTGGTTCACCGCCCTTGGCGTCTCCACGATGGCATT 158415 ||||| |||||||| || || |||||||| ||||| | || | ||| ||||| || Sbjct 4276 AGCTGCTTGGCCTGTAGTAGGTATCTGGTTTACCGCTTTAGGTATTAGCACTATGGCTTT 4335 Query 158416 CAACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAA 158475 |||||| || |||||||| |||||||| || | |||| ||||||||||||| | || Sbjct 4336 CAACCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGACAGTCAGGGTCGTGTAATTAA 4395 Query 158476 CACCTGGGCAGATGTACTGAACCGCGCTGGTCTTGGTATGGAAGTTATGCATGAGCGTAA 158535 ||| ||||| ||| | | ||||| ||| ||||||||||||||||||||||| ||||| Sbjct 4396 CACTTGGGCTGATATCATCAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAA 4455 Query 158536 CGCACACAACTTCCCACTCGACCTTGCTGCT 158566 || || |||||||| || ||||| |||||| Sbjct 4456 TGCTCATAACTTCCCTCTAGACCTAGCTGCT 4486 >seq309 Length=37764 Score = 471 bits (522), Expect = 5e-128 Identities = 715/1010 (71%), Gaps = 6/1010 (1%) Strand=Plus/Plus Query 159306 GATGACTGGCTTAAACGAGATCGCTTTGTTTTTGTGGGGTGGTCTGGACTACTACTTCTT 159365 ||||||||| | | || || || |||||||| || ||||| || ||| | || || Sbjct 23130 GATGACTGGTTACGGAGGGACCGTTTCGTTTTTGTAGGCTGGTCCGGTCTATTGCTCTTT 23189 Query 159366 CCCACTGCTTATCTGGCCATTGGCGGTTGGCTTACTGGCACAGCTTTTGTTACGAGTTGG 159425 || ||| ||| | || | || |||||| | || || ||| | ||||| || ||| Sbjct 23190 CCTTGTGCCTATTTCGCTGTAGGGGGTTGGTTCACAGGTACAACCTTTGTAACTTCATGG 23249 Query 159426 TACACCCACGGTCTTGCTAGTTCCTATCTTGAGGG-TGCTAACTTTCTCACAGCAGCTGT 159484 || ||||| || | || ||||| ||| | || || ||| || || | || || || || Sbjct 23250 TATACCCATGGATTGGCCAGTTCTTATTTGGAAGGCTGC-AATTTCTTAACTGCCGCGGT 23308 Query 159485 CTCGACGCCTGCTGACGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCA 159544 || || |||||| | | | | ||||| | | |||| ||||| ||||| | || Sbjct 23309 TTCTACTCCTGCTAATAGTTTAGCACATTCGTTATTGTTACTATGGGGGCCTGAAGCACA 23368 Query 159545 GGGGAATTTCCAGCGGTGGTGCCAACTTGGGGGATTATGGAATTTTGTGGCACTCCACGG 159604 || |||| || ||||| ||| | ||||| | |||| |||||| || ||||| || Sbjct 23369 AGGAGATTTTACTCGTTGGTGTCAATTGGGGGGTCTGTGGACTTTTGTTGCTCTCCATGG 23428 Query 159605 TGCCTTCGCCCTAATTGG-TTTCATGCTCCGTCAGTTTGAACTGGCACG-TCTCATTGGT 159662 || || | |||||| || ||| ||| | ||||| || || || || || ||| | | Sbjct 23429 AGCTTTTGGCCTAATAGGNTTTTATGTTACGTCAATTCGAGCTTGCTCGATCTGTTCAAT 23488 Query 159663 ATCCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTTGTCAGCGTCTTC 159722 | | ||||| ||||| || || ||||||||||| |||||||||||||| || || Sbjct 23489 -TGAGACCTTATAATGCAATCGCATTCTCTGGTCCAATTGCTGTTTTTGTTTCTGTATTT 23547 Query 159723 CTCATCTACCCATTGGGTCAGTCCAGTTGGTTTTTCGCTCCGTCCTTTGGGGTGGCAGCA 159782 || || || ||| | |||||||| ||||||| || || || ||||| || ||||| Sbjct 23548 CTGATTTATCCACTAGGTCAGTCTGGTTGGTTCTTTGCACCTAGTTTTGGTGTAGCAGCT 23607 Query 159783 ATCTTTAGATTCCTGTTGTTCCTTCAAGGATTTCACAACTGGACGTTAAATCCCTTCCAT 159842 || ||| ||||| | | || ||||||| ||||| || ||||| || || ||||| ||| Sbjct 23608 ATATTTCGATTCATCCTATTTTTTCAAGGGTTTCATAATTGGACCTTGAACCCCTTTCAT 23667 Query 159843 ATGATGGGAGTTGCTGGTATACTAGGTGGAGCACTACTCAGTGCCATCCATGGCGTTACT 159902 |||||||||||||| ||| || | || | || | || | ||||| ||||| | ||| Sbjct 23668 ATGATGGGAGTTGCCGGTGTATTGGGCGCTGCTTTGCTATGCGCCATTCATGGTGCTACC 23727 Query 159903 GTAGAGAACACACTGTATGAAGATGGAGAACAAGCAAATACCTTTAAGGCGTTTGATTCA 159962 ||||| || || | | |||||| || || |||||||| || || ||| | || Sbjct 23728 GTAGAAAATACTTTATTTGAAGACGGTGATGGTGCAAATACATTCCGTGCTTTTAACCCA 23787 Query 159963 ACTCAAGAGGAGGAGACTTACTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTC 160022 ||||||| || || ||||| || |||||||| || |||||||| ||||| || ||||| Sbjct 23788 ACTCAAGCCGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCCCAAATCTTT 23847 Query 160023 GGTATTGCGTTTTCTAACAAGCGGTGGCTTCATTTCTTCATGTTGTTTGTGCCTGTTATG 160082 || |||| ||||| || || || ||| | |||||||| ||||| ||||| || || | Sbjct 23848 GGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACC 23907 Query 160083 GGTCTTTGGACATCCTCTATTGGCATTATTGGCCTTGCTCTTAATCTTCGTGCTTACGA- 160141 ||| | |||| || |||| | | || || ||||| || || ||||| || || Sbjct 23908 GGTTTATGGATGAGTGCTCTTGGAGTAGTCGGTCTAGCTCTGAACCTACGTGCCTATGAC 23967 Query 160142 TTTCGTAAGTCAAGAGATCAGAGCAGCAGAAGATCCAGAATTTGAGACCTTCTACACCAA 160201 || ||| ||| || || | ||||| |||||||| ||||||||||| ||||||||||| Sbjct 23968 TTNCGTTTCTCAGGAAATTCGCGCAGCGGAAGATCCTGAATTTGAGACTTTCTACACCAA 24027 Query 160202 AAACATCCTATTGAACGAAGGACTACGTGCATGGTTGGCACCTGCTGATCAACCCCATGA 160261 ||| || || || |||||||| | || || ||| |||| || ||||| || ||||| Sbjct 24028 AAATATTCTCTTAAACGAAGGTATTCGCGCTTGGATGGCGGCTCAAGATCAGCCTCATGA 24087 Query 160262 AAACTTTATCTTCCCAGAAGAAGTATTGCCTAGAGGCAACGCCCTTTAAT 160311 |||| |||| ||||| || || || | || | || ||||| ||||||| Sbjct 24088 AAACCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCTTTAAT 24137 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548368662632840