Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20americanum_20[genbank_20GCA_5F900188915.1_202017-07-22] 837 sequences; 9,013,692 total letters Query= NC_021559.1 Length=179063 Score E Sequences producing significant alignments: (Bits) Value seq83 520 1e-142 seq309 374 1e-98 >seq83 Length=41462 Score = 520 bits (576), Expect = 1e-142 Identities = 713/988 (72%), Gaps = 10/988 (1%) Strand=Plus/Plus Query 72235 TTTTGTGAGTGGGTAACATCCACTGACAATCGCATCTACGTTGGTTGGTTTGGTGTCTTA 72294 || ||| | ||| |||| |||||| || || | ||| |||| ||||||||||| || Sbjct 3500 TTCTGTAACTGGATAACTAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTG 3559 Query 72295 ATGATCCCATGTCTTCTA-ACTGCTGCTGCTTGTTTCATTGTAGCATTCATCGCTGCTCC 72353 |||||||| | ||| | || || || || || ||| | || ||||| |||||||| Sbjct 3560 ATGATCCC-TACCTTATTGACGGCAACTTCTGTATTTATTATTGCCTTCATTGCTGCTCC 3618 Query 72354 TCCAGTCGATATCGACGGAATCAGAGAACCAGTTGCGGGTTCTTTCTTATATGGTAACAA 72413 |||||| || || || || || | ||||| ||| | || ||| | | || || ||||| Sbjct 3619 TCCAGTAGACATTGATGGTATTCGTGAACCTGTTTCAGGGTCTCTACTTTACGGAAACAA 3678 Query 72414 CATCATCTCTGGTGCTGTAGTTCCATCTTCAAACGCAATAGGATTACACTTCTATCCCAT 72473 || || || ||||| | |||| |||| || ||||| ||||| || || || || Sbjct 3679 TATTATTTCCGGTGCCATTATTCCTACTTCTGCAGCTATAGGTTTACATTTTTACCCAAT 3738 Query 72474 CTGGGAAGCAGCCACTATGGACGAGTGGTTGTATAACGGAGGTCCTTACCAGTTAGTTAT 72533 ||||||||| || | | || || ||||| || ||||| |||||||| | || || | Sbjct 3739 CTGGGAAGCGGCATCCGTTGATGAATGGTTATACAACGGTGGTCCTTATGAACTAATTGT 3798 Query 72534 TTTCCACTTCCTTATTGGAATCTCTGCCTACATGGGTAGACAGTGGGAACTATCATACAG 72593 | | |||||| | |||| | || ||||||||| | ||||||| || | | | Sbjct 3799 TCTACACTTCTTACTTGGCGTAGCTTGTTACATGGGTCGTGAGTGGGAGCTTAGCTTCCG 3858 Query 72594 ACTAGGAATGAGACCTTGGATATGTGTAGCATACTCAGCACCTGTATCTGCAGCATTTGC 72653 || || ||| |||||||||| ||| ||||| ||||| ||||| | || || || Sbjct 3859 TCTGGGTATGCGACCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACCGC 3918 Query 72654 AGTATTCCTTGTGTATCCATTCGGTCAGGGTTCATTCTCTGATGGTATGCCACTAGGTAT 72713 ||| ||| | | || ||| ||||||| || || |||||||||||||| ||||| || Sbjct 3919 AGTTTTCTTGATCTACCCAATCGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAAT 3978 Query 72714 CTCAGGTACGTTCAACTTCATGTTCGTGTTCCAAGCAGAACACAACATACTAATGCACCC 72773 ||| ||||| ||||| |||||| | || ||||| || || |||||||| || |||||||| Sbjct 3979 CTCTGGTACTTTCAATTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCC 4038 Query 72774 CTTCCATATGGCAGGTGTAGCAGGTATGTTCGGTGGTAGTCTCTTCAGTGCAATGCACGG 72833 || || ||| ||| || || ||| | ||||| || || |||||||| ||||| || Sbjct 4039 ATTTCACATGTTAGGCGTGGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGG 4098 Query 72834 TTCACTTGTTACTTCATCTCTAATCAGAGAGACAACAGAGAACGAGAGTCAAAACTACGG 72893 ||| | || ||||| | | ||||| || || ||||| || || | || | || Sbjct 4099 TTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGG 4158 Query 72894 CTATAAGTTCGGACAAGAAGAAGAAACATATAACATTGTTGCTGCTCATGGATACTTCGG 72953 || | ||||| ||||| |||||||| ||||| || || || |||||||| || || || Sbjct 4159 TTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCCGCTCATGGTTATTTTGG 4218 Query 72954 TAGATTAATCTTCCAGTATGCATCATTCAACAACTCTCGTTCATTACACTTCTTCCTCGC 73013 |||| |||||||| ||||| ||||||||||||||||| |||||||||||||| || Sbjct 4219 CCGATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCGTTACACTTCTTCCTAGC 4278 Query 73014 TGTATTCCCTGTAGTCTGTGTATGGTTAACCTCAATGGGTATCTGTACAATGGCATTCAA 73073 || | |||||||| || | ||||| ||| | | ||||| | || ||||| ||||| Sbjct 4279 TGCTTGGCCTGTAGTAGGTATCTGGTTTACCGCTTTAGGTATTAGCACTATGGCTTTCAA 4338 Query 73074 CCTTAACGGATTCAACTTCAACCAATCAGTTGTAGATGCAAAC-GGAAAGATTGTACC-A 73131 ||| || || ||||| ||||||||||| || || || || | || | |||| | Sbjct 4339 CCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGA--CAGTCAGGGTCG--TGTAATTA 4394 Query 73132 ACA--TGGGGAGATGTTCTTAACAGAGCAAACCTTGGAATGGAAGTTATGCATGAAAGAA 73189 ||| |||| ||| | | ||| | || |||||||| |||||||||||||||||| | | Sbjct 4395 ACACTTGGGCTGATATCATCAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTA 4454 Query 73190 ATGCACACAACTTCCCACTAGACCTAGC 73217 |||| || |||||||| ||||||||||| Sbjct 4455 ATGCTCATAACTTCCCTCTAGACCTAGC 4482 >seq309 Length=37764 Score = 374 bits (414), Expect = 1e-98 Identities = 708/1040 (68%), Gaps = 23/1040 (2%) Strand=Plus/Plus Query 73364 TTTGACGTTCTTGATGATTGGTTAAAGAGAGATCGTTTCGTATTCATCGGATGGTCTGGT 73423 ||||| || | ||||| |||||| ||| || |||||||| || | || ||||| ||| Sbjct 23118 TTTGATATTATGGATGACTGGTTACGGAGGGACCGTTTCGTTTTTGTAGGCTGGTCCGGT 23177 Query 73424 CTTTTACTTTTACCTTGTGCTTACCTAGCAATCGGAGGTTGGTTCGTAGGAACTACTTTC 73483 || || || || |||||||| || | || | || ||||||||| ||| || || || Sbjct 23178 CTATTGCTCTTTCCTTGTGCCTATTTCGCTGTAGGGGGTTGGTTCACAGGTACAACCTTT 23237 Query 73484 GTGACCTCATGGTACACACATGGTATTGCATCCTCATATCTTGAGGGAGCAAATTTTTTA 73543 || || |||||||| || ||||| | || || ||| | || || ||||| ||| Sbjct 23238 GTAACTTCATGGTATACCCATGGATTGGCCAGTTCTTATTTGGAAGGCTGCAATTTCTTA 23297 Query 73544 ACTGCAGCAGTATCAACACCTGGTGATGCTATGGGTCATAGTCTATTGTTCCTTTGGGGA 73603 ||||| || || || || |||| | || | | | ||| ||||||| || ||||| Sbjct 23298 ACTGCCGCGGTTTCTACTCCTGCTAATAGTTTAGCACATTCGTTATTGTTACTATGGGGG 23357 Query 73604 CCAGAGGCACAAGGAGATCTTGTACGATGGTTTCAATTAGGTGGACTATGGAACTTTGTA 73663 || || |||||||||||| || || |||| |||||| || || || |||| ||||| Sbjct 23358 CCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTGGGGGGTCTGTGGACTTTTGTT 23417 Query 73664 GCATTACATGGAGTCTTTGGACTCATAGG-TTTCATGCTTAGACAGTTTGAGATTGCAGG 73722 || | ||||||| ||||| || ||||| ||| ||| | | || || ||| |||| | Sbjct 23418 GCTCTCCATGGAGCTTTTGGCCTAATAGGNTTTTATGTTACGTCAATTCGAGCTTGCTCG 23477 Query 73723 ACTTGTTGGGATACGTCCTTACAACGCATTAGCTTTTTCAGCAGTTATCGCAGTATTCAC 73782 | |||| | | ||||| || ||| | || || || | || || || || Sbjct 23478 ATCTGTTCAATTGAGACCTTATAATGCAATCGCATTCTCTGGTCCAATTGCTGTTTTTGT 23537 Query 73783 GAGCATCTTTCTAATATATCCTTTAGGACAGCATAGTTGGTTCTTCGCACCTTCATTCGG 73842 | ||||| || ||||| |||| ||| | |||||||||| |||||| || || Sbjct 23538 TTCTGTATTTCTGATTTATCCACTAGGTCAGTCTGGTTGGTTCTTTGCACCTAGTTTTGG 23597 Query 73843 TGTCGCAGCAATCTTTCGTTATATTTTATTCATACAGGGTTTCCACAATATAACTCTTAA 73902 ||| ||||| || ||||| | || |||| | || || || || ||| || | || Sbjct 23598 TGTAGCAGCTATATTTCGATTCATCCTATTTTTTCAAGGGTTTCATAATTGGACCTTGAA 23657 Query 73903 TCCATTTCATATGATGGGTGTAGCAGGTATACTTGGTGGAGCATTACTATGTGCCATACA 73962 || |||||||||||||| || || ||| || | || | || || ||||| ||||| || Sbjct 23658 CCCCTTTCATATGATGGGAGTTGCCGGTGTATTGGGCGCTGCTTTGCTATGCGCCATTCA 23717 Query 73963 TGGTGCAACAGTACAGAACACATTGTATGAAGACACATCACAATACACTGAAGGTAAGAT 74022 |||||| || ||| | || || || | ||||| || ||| || | Sbjct 23718 TGGTGCTACCGTAGAAAATACTTTATTTGAAG------------ACGGTGATGG-----T 23760 Query 74023 TCAATCTACAACTTTCAGAGCATTCGATCCTACACAGGAAGAAGAGACTTATAGTATGAT 74082 ||| |||| ||| | || || | || || || | ||||| |||||| ||| | Sbjct 23761 GCAA-ATACA---TTCCGTGCTTTTAACCCAACTCAAGCCGAAGAAACTTATTCAATGGT 23816 Query 74083 TACTGCTAACAGATTCTGGTCACAGATATTTGGTATAGCATTTTCAAACAAAAGATTCTT 74142 || |||||| | || ||||| || || ||||| | || ||||| || ||| | | || Sbjct 23817 CACCGCTAACCGCTTTTGGTCCCAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTT 23876 Query 74143 ACACTTCCTTATGTTGTTCGTACCTGTCATGGGTATGTGGACATCATCTATAGGTATCGT 74202 ||| ||| ||||||| || ||||| || | ||| | |||| || | || | || Sbjct 23877 ACATTTCTTTATGTTATTTGTACCAGTAACCGGTTTATGGATGAGTGCTCTTGGAGTAGT 23936 Query 74203 AGGTCTAGCACTTAACCTTAGAGCATACGACTTT-GTATCTCAAGAGATAAGAGCAGCAG 74261 |||||||| || ||||| | || || ||||| || ||||| || || | ||||| | Sbjct 23937 CGGTCTAGCTCTGAACCTACGTGCCTATGACTTNCGTTTCTCAGGAAATTCGCGCAGCGG 23996 Query 74262 AAGACCCAGAGTTTGAAACCTTCTACACTAAGAACATTCTTCTTAATGAAGGTATGAGAG 74321 |||| || || ||||| || |||||||| || || ||||| | || |||||||| | | Sbjct 23997 AAGATCCTGAATTTGAGACTTTCTACACCAAAAATATTCTCTTAAACGAAGGTATTCGCG 24056 Query 74322 CATGGATGTCATCTGTCGATCAACCCCATGAGAACTTTGTGTTCCCAGAAGAAGTCTTGC 74381 | |||||| | || ||||| || ||||| ||| || | ||||| || || || | | Sbjct 24057 CTTGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTAC 24116 Query 74382 CACGAGGCAACGCACTATAA 74401 |||| || ||||| || ||| Sbjct 24117 CACGTGGAAACGCTCTTTAA 24136 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 572867606309960