Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20americanum_20[genbank_20GCA_5F900188915.1_202017-07-22] 837 sequences; 9,013,692 total letters Query= NC_023587.1 Length=189311 Score E Sequences producing significant alignments: (Bits) Value seq83 594 6e-165 seq309 493 2e-134 >seq83 Length=41462 Score = 594 bits (658), Expect = 6e-165 Identities = 729/989 (74%), Gaps = 5/989 (1%) Strand=Plus/Plus Query 177558 TTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACTG 177617 ||||| | ||| ||||| || | ||||| || || | || ||||| || || || Sbjct 3500 TTCTGTAACTGGATAACTAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTG 3559 Query 177618 ATGATTCCAACTCTGTTGGCAGCAACTATCTGC-TTCATCGTCGCCTTCGTCGCTGCTCC 177676 ||||| || || | ||| | |||||| |||| || || | |||||| | |||||||| Sbjct 3560 ATGATCCCTACCTTATTGACGGCAACT-TCTGTATTTATTATTGCCTTCATTGCTGCTCC 3618 Query 177677 CCCCGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACAA 177736 || || ||||| || || || |||||||| || | || || || | || || ||||| Sbjct 3619 TCCAGTAGACATTGATGGTATTCGTGAACCTGTTTCAGGGTCTCTACTTTACGGAAACAA 3678 Query 177737 CATCATCTCTGGTGCAGTTGTACCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCAT 177796 || || || ||||| || | || |||| || || ||| | || || || || || Sbjct 3679 TATTATTTCCGGTGCCATTATTCCTACTTCTGCAGCTATAGGTTTACATTTTTACCCAAT 3738 Query 177797 CTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAGT 177856 ||||||||| ||||| ||||||| ||| | || ||||||||||||| |||| | || Sbjct 3739 CTGGGAAGCGGCATCCGTTGATGAATGGTTATACAACGGTGGTCCTTATGAACTAATTGT 3798 Query 177857 CTTTCACTTCCTTATCGGCATCTATGCATATATGGGACGTGAGTGGGAACTTTCATACCG 177916 | |||||| | | ||| | | || ||||| ||||||||||| ||| | ||| Sbjct 3799 TCTACACTTCTTACTTGGCGTAGCTTGTTACATGGGTCGTGAGTGGGAGCTTAGCTTCCG 3858 Query 177917 TCTAGGTATGCGCCCCTGGATCTGTGTTGCATACTCTGCACCTGTTGCAGCAGCATCCGC 177976 ||| |||||||| || ||||| ||||||||| || || ||||||||||| || |||| Sbjct 3859 TCTGGGTATGCGACCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACCGC 3918 Query 177977 AGTCTTTCTAG-TCTATCCTTTCGGTCAAGGTTCATTCTCCGATGCTATGCCTCTTGGTA 178035 ||| ||||| | |||| || |||||||||| || || |||| ||||||||| || | Sbjct 3919 AGT-TTTCTTGATCTACCCAATCGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAA 3977 Query 178036 TCTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAACACAATATCCTTATGCACC 178095 ||||||||||||| || | |||| |||||||||| || || ||||| ||||||||||||| Sbjct 3978 TCTCTGGTACTTTCAATTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACC 4037 Query 178096 CGTTCCACATGCTCGGTGTTGCTGGGGTATTCGGTGGATCTCTTTTCTCTGCTATGCATG 178155 | || |||||| | || || ||||| |||||||| || || || ||| ||||||||||| Sbjct 4038 CATTTCACATGTTAGGCGTGGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATG 4097 Query 178156 GAAGTCTCGTTACTTCTTCGCTCGTCCGTGAGACGACAGAAACTGAGTCCCAGAACTATG 178215 | | || |||||| | || | || || ||||||| ||| || || | | Sbjct 4098 GTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAG 4157 Query 178216 GTTACAAGTTCGGACAAGAAGAAGAAACATATAACATCGTCGCAGCCCATGGTTACTTCG 178275 |||||| ||||| ||||| |||||||| ||||| ||||| || || |||||||| || | Sbjct 4158 GTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCCGCTCATGGTTATTTTG 4217 Query 178276 GTCGTTTGATCTTCCAATATGCATCGTTCAACAACTCCCGTTCACTGCACTTCTTCCTCG 178335 | || ||||||||||||||||| ||||||||||| ||||| | ||||||||||| | Sbjct 4218 GCCGATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCGTTACACTTCTTCCTAG 4277 Query 178336 CAGCATGGCCTGTAGTTGGAATCTGGTTCACCGCACTTGGTGTATCCACCATGGCATTTA 178395 | || ||||||||||| || |||||||| ||||| | ||| | ||| ||||| || | Sbjct 4278 CTGCTTGGCCTGTAGTAGGTATCTGGTTTACCGCTTTAGGTATTAGCACTATGGCTTTCA 4337 Query 178396 ACCTCAATGGATTCAACTTCAACCAGTCCATCCTCGACGGACAAGGACGTGTCCTCAACA 178455 |||| ||||| ||||| |||||||| || | | ||| | || || ||||| | |||| Sbjct 4338 ACCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGACAGTCAGGGTCGTGTAATTAACA 4397 Query 178456 CATGGGCAGACGTGCTCAACCGTGCCGGTCTCGGCATGGAAGTCATGCACGAAAGAAATA 178515 | ||||| || | |||||||||| || || |||||||| ||||| ||| | ||| Sbjct 4398 CTTGGGCTGATATCATCAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAAT- 4456 Query 178516 GCACATAACTTCCCGCTTGATCTTGCAGC 178544 || ||||||||||| || || || || || Sbjct 4457 GCTCATAACTTCCCTCTAGACCTAGCTGC 4485 >seq309 Length=37764 Score = 493 bits (546), Expect = 2e-134 Identities = 719/1008 (71%), Gaps = 8/1008 (1%) Strand=Plus/Plus Query 178949 TGGATGACTGGCTTAATCGGGATCGCTTTGTCTTTGTGGGTTGGTCTGGACTCCTACTTC 179008 ||||||||||| | |||| || || || ||||| || ||||| || || | || Sbjct 23128 TGGATGACTGGTTACGGAGGGACCGTTTCGTTTTTGTAGGCTGGTCCGGTCTATTGCTCT 23187 Query 179009 TTCCCACTGCTTATCTTGCCATTGGCGGTTGGCTTACTGGGACAGCTTTTGTTACGAGTT 179068 |||| ||| ||| | || | || |||||| | || || ||| | ||||| || | Sbjct 23188 TTCCTTGTGCCTATTTCGCTGTAGGGGGTTGGTTCACAGGTACAACCTTTGTAACTTCAT 23247 Query 179069 GGTACACCCATGGTCTTGCTAGTTCCTATCTTGAAGG-TGCTAACTTTCTTA-CGGCAGC 179126 |||| |||||||| | || ||||| ||| | ||||| ||| | ||||||| | || || Sbjct 23248 GGTATACCCATGGATTGGCCAGTTCTTATTTGGAAGGCTGCAA--TTTCTTAACTGCCGC 23305 Query 179127 TGTCTCGACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTC 179186 || || || |||||| || | | | ||||| | | |||| ||||| ||||| | Sbjct 23306 GGTTTCTACTCCTGCTAATAGTTTAGCACATTCGTTATTGTTACTATGGGGGCCTGAAGC 23365 Query 179187 TCAGGGGAATTTCCAGCGGTGGTGCCAACTTGGGGGACTATGGAATTTCGTGGCTCTCCA 179246 || || |||| || ||||| ||| | ||||| || |||| ||| || |||||||| Sbjct 23366 ACAAGGAGATTTTACTCGTTGGTGTCAATTGGGGGGTCTGTGGACTTTTGTTGCTCTCCA 23425 Query 179247 CGGTGCCTTCGCCCTAATTGGATTC-ATGCTTCGTCAGTTTGAACTGGCACG-TCTCATC 179304 || || || | |||||| || || ||| | ||||| || || || || || ||| || Sbjct 23426 TGGAGCTTTTGGCCTAATAGGNTTTTATGTTACGTCAATTCGAGCTTGCTCGATCTGTTC 23485 Query 179305 GGTATCCGTCCTTACAATGCGATTGCTTTTACTGGTCCTATTGCCGTATTCGTTAGTGTA 179364 | | | ||||| ||||| || || || ||||||| ||||| || || ||| |||| Sbjct 23486 AAT-TGAGACCTTATAATGCAATCGCATTCTCTGGTCCAATTGCTGTTTTTGTTTCTGTA 23544 Query 179365 TTTCTCATCTACCCACTTGGACAATCCAGTTGGTTCTTTGCGCCATCGTTTGGTGTTGCG 179424 ||||| || || ||||| || || || ||||||||||||| || |||||||| || Sbjct 23545 TTTCTGATTTATCCACTAGGTCAGTCTGGTTGGTTCTTTGCACCTAGTTTTGGTGTAGCA 23604 Query 179425 GCGATCTTTAGATTCCTACTTTTCTTACAAGGTTTCCACAACTGGACACTCAACCCCTTT 179484 || || ||| ||||| | || || || ||||| || || || ||||| | ||||||||| Sbjct 23605 GCTATATTTCGATTCATCCTATTTTTTCAAGGGTTTCATAATTGGACCTTGAACCCCTTT 23664 Query 179485 CACATGATGGGAGTTGCAGGTATCCTGGGTGGTGCTCTGCTCTCTGCTATTCATGGAGTA 179544 || |||||||||||||| ||| | |||| | |||| |||| | || |||||||| | Sbjct 23665 CATATGATGGGAGTTGCCGGTGTATTGGGCGCTGCTTTGCTATGCGCCATTCATGGTGCT 23724 Query 179545 ACTGTAGAGAATACATTGTATGAAGATGGAGAACAAGCAAACACATTTAAAGCGTTCGAC 179604 || ||||| ||||| || | |||||| || || ||||| ||||| || || || Sbjct 23725 ACCGTAGAAAATACTTTATTTGAAGACGGTGATGGTGCAAATACATTCCGTGCTTTTAAC 23784 Query 179605 TCTACGCAAGAGGAGGAGACCTATTCTATGGTTACAGCGAACCGTTTTTGGTCGCAGATC 179664 | || |||| || || || ||||| ||||| || || ||||| |||||||| || ||| Sbjct 23785 CCAACTCAAGCCGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCCCAAATC 23844 Query 179665 TTCGGGGTTCCGTTTAGCAATAAGCGTTGGTTCCACTTCTTTAAGCTGTTTGTTCCTGTC 179724 || |||||| | ||| |||||| |||||||| || ||||||| | | ||||| || || Sbjct 23845 TTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTA 23904 Query 179725 ATGGGTCTTTGGGTCTCTTCTATTGGCATCATTGGGCTAGCTCTTAATCTTCGTGCTTAT 179784 | ||| | ||| | | || |||| | | || |||||||| || || ||||| ||| Sbjct 23905 ACCGGTTTATGGATGAGTGCTCTTGGAGTAGTCGGTCTAGCTCTGAACCTACGTGCCTAT 23964 Query 179785 GA-TTTTGTGAGTCAAGAGATCAGAGCAGCAGAAGATCCTGAGTTCGAGACGTTCTATAC 179843 || || || ||| || || | ||||| ||||||||||| || ||||| ||||| || Sbjct 23965 GACTTNCGTTTCTCAGGAAATTCGCGCAGCGGAAGATCCTGAATTTGAGACTTTCTACAC 24024 Query 179844 AAAGAACATTCTTCTGAATGAAGGACTACGTGCTTGGTTGGCACCTGCTGATCAACCACA 179903 || || ||||| | || ||||| | || |||||| |||| || ||||| || || Sbjct 24025 CAAAAATATTCTCTTAAACGAAGGTATTCGCGCTTGGATGGCGGCTCAAGATCAGCCTCA 24084 Query 179904 TGAAAACTTCATCTTCCCAGAAGAAGTCCTACCTAGTGGTAACGCACT 179951 ||||||| | || ||||| || || || ||||| |||| ||||| || Sbjct 24085 TGAAAACCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCT 24132 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 605660863206920