Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20americanum_20[genbank_20GCA_5F900188915.1_202017-07-22] 837 sequences; 9,013,692 total letters Query= NC_026927.1 Length=228143 Score E Sequences producing significant alignments: (Bits) Value seq83 583 1e-161 seq309 417 1e-111 >seq83 Length=41462 Score = 583 bits (646), Expect = 1e-161 Identities = 706/954 (74%), Gaps = 8/954 (1%) Strand=Plus/Plus Query 174495 AATCGTCTTTACGTCGGTTGGTTCGGTGTTCTAATGATTCCTACATTGTTAGCCGCAACT 174554 || ||||||||| | || ||||| |||||| | ||||| ||||| || || | |||||| Sbjct 3527 AACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACGGCAACT 3586 Query 174555 GTATGT-TTCATTATCGCTTTCGTGGGTGCTCCCCCAGTGGACATCGACGGAATCCGTGA 174613 | ||| || ||||| || ||| | | |||||| ||||| ||||| || || || ||||| Sbjct 3587 -TCTGTATTTATTATTGCCTTCATTGCTGCTCCTCCAGTAGACATTGATGGTATTCGTGA 3645 Query 174614 ACCAGTAGCTGGTTCACTCATGTATGGAAACAACATCATCTCTGGTGCAGTTGTTCCTAG 174673 ||| || | || || || | || |||||||| || || || ||||| || |||||| Sbjct 3646 ACCTGTTTCAGGGTCTCTACTTTACGGAAACAATATTATTTCCGGTGCCATTATTCCTAC 3705 Query 174674 TTCAAACGCAATCGGTCTACACTTCTACCCAATCTGGGAAGCAGCCACACTCGACGAATG 174733 ||| || || ||| |||| || ||||||||||||||||| || | | || ||||| Sbjct 3706 TTCTGCAGCTATAGGTTTACATTTTTACCCAATCTGGGAAGCGGCATCCGTTGATGAATG 3765 Query 174734 GCTCTACAACGGTGGTCCTTTCCAACTAGTTGTCTTCCACTTCCTTATTGG--TATCTAC 174791 | | |||||||||||||||| ||||| |||| | |||||| | |||| || || Sbjct 3766 GTTATACAACGGTGGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGGCGTAGCTTG 3825 Query 174792 GCCTATATGGGACGTGAGTGGGAACTCTCTTATCGTTTAGGTATGAGACCTTGGATCTGT 174851 || ||||| ||||||||||| || | ||| | |||||| |||||||||| | Sbjct 3826 T--TACATGGGTCGTGAGTGGGAGCTTAGCTTCCGTCTGGGTATGCGACCTTGGATTGCT 3883 Query 174852 GTAGCATACTCTGCACCAGTTGCAGCAGCTTCAGCAGTATTCCTAGTCTATCCTTTCGGT 174911 || ||||| || || || |||||||| ||| | ||||| ||| | |||| || ||||| Sbjct 3884 GTTGCATATTCAGCTCCTGTTGCAGCTGCTACCGCAGTTTTCTTGATCTACCCAATCGGT 3943 Query 174912 CAAGGTTCATTCTCAGACGCGATGCCCTTGGGTATCTCTGGAACATTCAACTACATGTTG 174971 ||||| || || || | ||||| | || |||||||| || ||||| | |||| | Sbjct 3944 CAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAATTTCATGATT 4003 Query 174972 GTCTTCCAAGCAGAACATAACATCTTGATGCACCCCTTCCACATGTTGGGAGTCGCAGGT 175031 || ||||| || || || |||||| | |||||||| || |||||||| || || || ||| Sbjct 4004 GTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCACATGTTAGGCGTGGCTGGT 4063 Query 175032 GTCTTCGGTGGTTCATTGTTCTCAGCGATGCATGGTTCACTTGTTACCTCTTCACTTG-T 175090 || ||||| || || | ||| || ||||||||||| |||| || || | ||| | Sbjct 4064 GTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTC-CTTGGTAACTTCTAGTTTGAT 4122 Query 175091 CCGTGAGACAACTGAAACTGAGTCACAGAACTATGGTTACAAGTTCGGCCAAGAAGAAGA 175150 | | || || || |||| ||| || || | ||||||| ||||| ||||| ||||| Sbjct 4123 CAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAGGAAGA 4182 Query 175151 GACCTATAACATCGTGGCAGCCCATGGCTACTTCGGTCGTTTGATCTTCCAATACGCTTC 175210 || ||||| ||||| || || ||||| || || || || |||||||||||||| ||| Sbjct 4183 AACTTATAATATCGTAGCCGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAG 4242 Query 175211 ATTCAACAACTCACGCTCACTCCACTTCTTCTTAGCCGCATGGCCAGTTGTGGGTATCTG 175270 ||||||||||| || || | ||||||||| |||| || ||||| || || |||||||| Sbjct 4243 TTTCAACAACTCTCGTTCGTTACACTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATCTG 4302 Query 175271 GTTCACCGCACTTGGTGTTTCCACAATGGCATTCAACCTCAATGGTTTCAACTTCAACCA 175330 ||| ||||| | ||| || ||| ||||| |||||||| ||||||||||| |||||||| Sbjct 4303 GTTTACCGCTTTAGGTATTAGCACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCA 4362 Query 175331 GTCTGTTATCGACGGACAAGGTAGAGTATTGAACACCTGGGCGGATGTTCTTAACAGAGC 175390 ||||| | ||| | || ||| | ||| | ||||| ||||| ||| | | ||| | || Sbjct 4363 ATCTGTAGTTGACAGTCAGGGTCGTGTAATTAACACTTGGGCTGATATCATCAACCGTGC 4422 Query 175391 TGGTCTTGGGATGGAAGTAATGCATGAGAGAAATGCACACAACTTCCCACTAGA 175444 | ||||| |||||||| |||||||| | ||||| || |||||||| ||||| Sbjct 4423 TAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAACTTCCCTCTAGA 4476 >seq309 Length=37764 Score = 417 bits (462), Expect = 1e-111 Identities = 702/1011 (69%), Gaps = 4/1011 (0%) Strand=Plus/Plus Query 175853 TGATATTTTGGAAGACTGGCTTCTCAGAGATAGGTTTATCTTTATTGGCTGGTCTGGATT 175912 ||||||| |||| |||||| | | || || | || | ||| | |||||||| || | Sbjct 23120 TGATATTATGGATGACTGGTTACGGAGGGACCGTTTCGTTTTTGTAGGCTGGTCCGGTCT 23179 Query 175913 ACTACTTCTTCCCACTGCTTATCTTGCCATTGGCGGCTGGCTTACTGGCACAACTTTTGT 175972 | | || |||| ||| ||| | || | || || ||| | || || ||||| ||||| Sbjct 23180 ATTGCTCTTTCCTTGTGCCTATTTCGCTGTAGGGGGTTGGTTCACAGGTACAACCTTTGT 23239 Query 175973 CACGAGTTGGTACACCCATGGTCTTGCTTCTTCCTATCTTGAGGG-TGCTAACTTTCTCA 176031 || ||||| |||||||| | || ||| ||| | || || ||| || || | | Sbjct 23240 AACTTCATGGTATACCCATGGATTGGCCAGTTCTTATTTGGAAGGCTGC-AATTTCTTAA 23298 Query 176032 CAGCGGCTGTCTCGACTCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTC 176091 | || || || || ||||||||| || | | | ||||| | | |||| ||||| | Sbjct 23299 CTGCCGCGGTTTCTACTCCTGCTAATAGTTTAGCACATTCGTTATTGTTACTATGGGGGC 23358 Query 176092 CTGAATCTCAGGGCGACTTCCAGCGGTGGCTCCAACTTGGAGGGCTTTGGTCCTTTGTTG 176151 ||||| | || || || || || ||| ||| | || || || ||| | ||||||| Sbjct 23359 CTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTGGGGGGTCTGTGGACTTTTGTTG 23418 Query 176152 CTCTCCACGGTGCCTTCGCTCTGATTGGATTC-ATGCTTCGTCAGTTTGAACTGGCAAGA 176210 ||||||| || || || | || || || || ||| | ||||| || || || || || Sbjct 23419 CTCTCCATGGAGCTTTTGGCCTAATAGGNTTTTATGTTACGTCAATTCGAGCTTGCTCGA 23478 Query 176211 CTCATTGGTATCCGTCCCTACAACGCTATTGCATTCAGTGGTCCTATCGCTGTATTTGTC 176270 || | | || || || || || |||||| |||||| || ||||| ||||| Sbjct 23479 TCTGTTCAATTGAGACCTTATAATGCAATCGCATTCTCTGGTCCAATTGCTGTTTTTGTT 23538 Query 176271 AGTGTGTTTCTTCTATACCCACTAGGTCAATCTTCCTGGTTCTTTGCCCCCTCCTTTGGT 176330 ||| ||||| | || ||||||||||| ||| ||||||||||| || |||||| Sbjct 23539 TCTGTATTTCTGATTTATCCACTAGGTCAGTCTGGTTGGTTCTTTGCACCTAGTTTTGGT 23598 Query 176331 GTGGCAGCAATCTTTAGATTCCTATTGTTTCTTCAGGGTTTCCACAACTGGACACTGAAC 176390 || ||||| || ||| ||||| | | ||| |||| || || || || ||||| ||||| Sbjct 23599 GTAGCAGCTATATTTCGATTCATCCTATTTTTTCAAGGGTTTCATAATTGGACCTTGAAC 23658 Query 176391 CCCTTCCATATGATGGGAGTTGCTGGTATACTAGGTGGAGCACTACTATCTGCAATCCAT 176450 ||||| ||||||||||||||||| ||| || | || | || | |||| || || ||| Sbjct 23659 CCCTTTCATATGATGGGAGTTGCCGGTGTATTGGGCGCTGCTTTGCTATGCGCCATTCAT 23718 Query 176451 GGCGTTACTGTTGAAAATACCCTATATGAAGATGGAGAACAGAACAACACCTTCACTGCG 176510 || | ||| || |||||||| ||| |||||| || || || || ||| ||| Sbjct 23719 GGTGCTACCGTAGAAAATACTTTATTTGAAGACGGTGATGGTGCAAATACATTCCGTGCT 23778 Query 176511 TTCGATTCCACGCAGGAGGAAGAGACCTATTCGATGGTTACTGCGAACCGCTTCTGGTCG 176570 || | | || || | ||||| || ||||| ||||| || || |||||||| ||||| Sbjct 23779 TTTAACCCAACTCAAGCCGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCC 23838 Query 176571 CAAATCTTCGGGGTTGCGTTTAGTAATAAGCGTTGGCTTCACTTCTTTATGTTGTTTGTC 176630 |||||||| |||||||| ||| ||||| |||||| | || ||||||||||| ||||| Sbjct 23839 CAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTA 23898 Query 176631 CCTGTCATGGGTCTTTGGGTCTCAAGTATTGGCATCATTGGGCTTGCTCTTAATCTTCGT 176690 || || | ||| | ||| | | |||| | | || || ||||| || || ||| Sbjct 23899 CCAGTAACCGGTTTATGGATGAGTGCTCTTGGAGTAGTCGGTCTAGCTCTGAACCTACGT 23958 Query 176691 GCTTATGA-TTTTGTGAGCCAAGAGATTAGAGCAGCAGAAGATCCTGAGTTTGAAACTTT 176749 || ||||| || || || || ||| | ||||| ||||||||||| ||||| ||||| Sbjct 23959 GCCTATGACTTNCGTTTCTCAGGAAATTCGCGCAGCGGAAGATCCTGAATTTGAGACTTT 24018 Query 176750 CTACACAAAGAACATCCTTCTTAACGAAGGACTAAGAGCATGGATGGCACCTGTGGATCA 176809 |||||| || || || || | |||||||| | | || |||||||| || ||||| Sbjct 24019 CTACACCAAAAATATTCTCTTAAACGAAGGTATTCGCGCTTGGATGGCGGCTCAAGATCA 24078 Query 176810 ACCACATGAGTCATTTGTATTCCCAGAAGAAGTTCTACCTAGAGGTAACGC 176860 || ||||| || ||||||| || || |||||||| | || ||||| Sbjct 24079 GCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGC 24129 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 729921963111560