Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20americanum_20[genbank_20GCA_5F900188915.1_202017-07-22] 837 sequences; 9,013,692 total letters Query= NC_027130.1 Length=172688 Score E Sequences producing significant alignments: (Bits) Value seq83 598 5e-166 seq309 491 5e-134 >seq83 Length=41462 Score = 598 bits (662), Expect = 5e-166 Identities = 729/989 (74%), Gaps = 4/989 (0%) Strand=Plus/Plus Query 158379 TTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACTG 158438 ||||| | ||| ||||| || | ||||| || || | || ||||| || || || Sbjct 3500 TTCTGTAACTGGATAACTAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTG 3559 Query 158439 ATGATTCCAACTCTGTTGGCAGCAACCATCTGT-TTCATCGTCGCCTTCGTCGCTGCTCC 158497 ||||| || || | ||| | ||||| ||||| || || | |||||| | |||||||| Sbjct 3560 ATGATCCCTACCTTATTGACGGCAACT-TCTGTATTTATTATTGCCTTCATTGCTGCTCC 3618 Query 158498 CCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACAA 158557 || || ||||| || || || |||||||| || | || || || | || || ||||| Sbjct 3619 TCCAGTAGACATTGATGGTATTCGTGAACCTGTTTCAGGGTCTCTACTTTACGGAAACAA 3678 Query 158558 CATCATCTCTGGTGCAGTTGTACCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCAT 158617 || || || ||||| || | || |||| || || ||| | || || || || || Sbjct 3679 TATTATTTCCGGTGCCATTATTCCTACTTCTGCAGCTATAGGTTTACATTTTTACCCAAT 3738 Query 158618 CTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAGT 158677 ||||||||| ||||| ||||||| ||| | || ||||||||||||| |||| | || Sbjct 3739 CTGGGAAGCGGCATCCGTTGATGAATGGTTATACAACGGTGGTCCTTATGAACTAATTGT 3798 Query 158678 CTTTCACTTCCTTATCGGCATCTATGCATATATGGGACGTGAATGGGAACTTTCATACCG 158737 | |||||| | | ||| | | || ||||| ||||| ||||| ||| | ||| Sbjct 3799 TCTACACTTCTTACTTGGCGTAGCTTGTTACATGGGTCGTGAGTGGGAGCTTAGCTTCCG 3858 Query 158738 CTTAGGTATGCGCCCCTGGATCTGTGTAGCATATTCTGCACCAGTCGCTGCAGCATCTGC 158797 | |||||||| || ||||| ||| |||||||| || || || || || || | || Sbjct 3859 TCTGGGTATGCGACCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACCGC 3918 Query 158798 TGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCCGATGCTATGCCTCTTGGTAT 158857 || ||| | |||| || |||||||||| ||| || |||| ||||||||| || || Sbjct 3919 AGTTTTCTTGATCTACCCAATCGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAAT 3978 Query 158858 CTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAACACAACATCCTTATGCACCC 158917 |||||||||||| || | |||| |||||||||| || || |||||||||||||||||||| Sbjct 3979 CTCTGGTACTTTCAATTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCC 4038 Query 158918 GTTCCATATGCTCGGTGTTGCTGGGGTATTCGGTGGATCTCTTTTCTCTGCTATGCATGG 158977 || || ||| | || || ||||| |||||||| || || || ||| |||||||||||| Sbjct 4039 ATTTCACATGTTAGGCGTGGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGG 4098 Query 158978 AAGTCTCGTTACTTCCTCACTCGTTC-GTGAAACGACTGAAACAGAGTCACAGAACTATG 159036 | || |||| || | | || | ||||| || |||| || || || | | Sbjct 4099 TTCCTTGGTAACTT-CTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAG 4157 Query 159037 GTTACAAGTTCGGACAAGAAGAAGAAACATATAATATCGTCGCAGCCCATGGTTACTTCG 159096 |||||| ||||| ||||| |||||||| ||||||||||| || || |||||||| || | Sbjct 4158 GTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCCGCTCATGGTTATTTTG 4217 Query 159097 GTCGTTTGATCTTCCAATACGCTTCATTCAACAACTCCCGTTCCTTGCACTTCTTCCTTG 159156 | || |||||||||||||| ||| ||||||||||| ||||| || ||||||||||| | Sbjct 4218 GCCGATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCGTTACACTTCTTCCTAG 4277 Query 159157 CTGCATGGCCTGTTGTCGGCATCTGGTTCACCGCCCTTGGCGTGTCAACCATGGCATTCA 159216 |||| |||||||| || || |||||||| ||||| | || | || ||||| |||| Sbjct 4278 CTGCTTGGCCTGTAGTAGGTATCTGGTTTACCGCTTTAGGTATTAGCACTATGGCTTTCA 4337 Query 159217 ACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAACA 159276 |||| || |||||||| |||||||| || | |||| ||||||||||||| | |||| Sbjct 4338 ACCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGACAGTCAGGGTCGTGTAATTAACA 4397 Query 159277 CCTGGGCAGATGTACTGAACCGTGCAGGTCTGGGTATGGAAGTTATGCATGAGCGTAACG 159336 | ||||| ||| | | |||||||| || |||||||||||||||||||| ||||| | Sbjct 4398 CTTGGGCTGATATCATCAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATG 4457 Query 159337 CACACAACTTCCCACTCGACCTTGCTGCT 159365 | || |||||||| || ||||| |||||| Sbjct 4458 CTCATAACTTCCCTCTAGACCTAGCTGCT 4486 >seq309 Length=37764 Score = 491 bits (544), Expect = 5e-134 Identities = 730/1024 (71%), Gaps = 10/1024 (1%) Strand=Plus/Plus Query 159899 TTTGACATACTCGACGACTGGCTTAAACGGGATCGTTTCGTTTTTGTTGGCTGGTCTGGA 159958 ||||| || | || |||||| | |||| |||||||||||||| |||||||| || Sbjct 23118 TTTGATATTATGGATGACTGGTTACGGAGGGACCGTTTCGTTTTTGTAGGCTGGTCCGGT 23177 Query 159959 CTTCTTCTTCTTCCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGAACAACTTTC 160018 || | || |||| ||| ||| | ||| | || |||||| | || || ||||| || Sbjct 23178 CTATTGCTCTTTCCTTGTGCCTATTTCGCTGTAGGGGGTTGGTTCACAGGTACAACCTTT 23237 Query 160019 GCAACGAGCTGGTATACCCATGGACTCGCTAGTTCCTATCTTGAGGG-TGCAAACTTTCT 160077 | ||| ||||||||||||||| | || ||||| ||| | || || ||||| ||||| Sbjct 23238 GTAACTTCATGGTATACCCATGGATTGGCCAGTTCTTATTTGGAAGGCTGCAA--TTTCT 23295 Query 160078 TA-CAGCGTCAGTTAGCACTCCAGCTGACGCTATGGGTCATTCTCTTCTTCTT-CTCTGG 160135 || | || | ||| ||||| ||| | | | | ||||| || || || || ||| Sbjct 23296 TAACTGCCGCGGTTTCTACTCCTGCTAATAGTTTAGCACATTCG-TTATTGTTACTATGG 23354 Query 160136 GGTCCTGAGGCTCAAGGGGATTTCGTCAGGTGGATCCAACTTGGGGGACTCTGGAATTTT 160195 || ||||| || ||||| ||||| | ||| ||| | ||||| || |||| |||| Sbjct 23355 GGGCCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTGGGGGGTCTGTGGACTTTT 23414 Query 160196 GTGGCACTCCATGGTGCCTTCGCCCTAATTGGATTC-ATGCTCCGTCAGTTTGAACTGGC 160254 || || |||||||| || || | |||||| || || ||| | ||||| || || || || Sbjct 23415 GTTGCTCTCCATGGAGCTTTTGGCCTAATAGGNTTTTATGTTACGTCAATTCGAGCTTGC 23474 Query 160255 ACG-TCTCATCGGTATCCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTCT 160313 || ||| || | | | ||||| ||||| || || ||||||||||| |||||||| | Sbjct 23475 TCGATCTGTTCAAT-TGAGACCTTATAATGCAATCGCATTCTCTGGTCCAATTGCTGTTT 23533 Query 160314 TTGTCAGCGTATTCCTCATCTACCCATTGGGTCAGTCCAGTTGGTTTTTCGCTCCGTCCT 160373 |||| ||||| || || || ||| | |||||||| ||||||| || || || | Sbjct 23534 TTGTTTCTGTATTTCTGATTTATCCACTAGGTCAGTCTGGTTGGTTCTTTGCACCTAGTT 23593 Query 160374 TTGGGGTGGCAGCAATCTTTAGATTCCTGTTGTTCCTTCAAGGATTTCACAACTGGACGC 160433 |||| || ||||| || ||| ||||| | | || ||||||| ||||| || ||||| Sbjct 23594 TTGGTGTAGCAGCTATATTTCGATTCATCCTATTTTTTCAAGGGTTTCATAATTGGACCT 23653 Query 160434 TTAACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGAGGAGCACTGCTCAGTGCCA 160493 | |||||||| ||||||||||||||||| ||| || | || | || |||| | |||| Sbjct 23654 TGAACCCCTTTCATATGATGGGAGTTGCCGGTGTATTGGGCGCTGCTTTGCTATGCGCCA 23713 Query 160494 TCCATGGCGTTACTGTAGAGAACACACTGTATGAAGATGGAGAACAAGCAAATACCTTTA 160553 | ||||| | ||| ||||| || || | | |||||| || || |||||||| || Sbjct 23714 TTCATGGTGCTACCGTAGAAAATACTTTATTTGAAGACGGTGATGGTGCAAATACATTCC 23773 Query 160554 AGGCGTTTGATTCGACACAGGAAGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCT 160613 || ||| | | || || | ||||| |||||||| |||||||| || |||||||| | Sbjct 23774 GTGCTTTTAACCCAACTCAAGCCGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTT 23833 Query 160614 GGTCGCAGATCTTCGGTATTGCGTTTTCTAACAAGCGGTGGCTTCATTTTTTCATGTTGT 160673 |||| || ||||| || |||| ||||| || || || ||| | ||||| || ||||| | Sbjct 23834 GGTCCCAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTAT 23893 Query 160674 TTGTGCCTGTTATGGGTCTTTGGACATCCAGTATTGGCATTATTGGTCTTGCTCTCAATC 160733 |||| || || | ||| | |||| | |||| | | ||||| ||||| || | Sbjct 23894 TTGTACCAGTAACCGGTTTATGGATGAGTGCTCTTGGAGTAGTCGGTCTAGCTCTGAACC 23953 Query 160734 TTCGTGCTTACGA-TTTCGTGAGTCAAGAGATTAGAGCAGCAGAAGATCCAGAATTTGAG 160792 | ||||| || || || ||| ||| || ||| | ||||| |||||||| ||||||||| Sbjct 23954 TACGTGCCTATGACTTNCGTTTCTCAGGAAATTCGCGCAGCGGAAGATCCTGAATTTGAG 24013 Query 160793 ACCTTCTACACCAAGAACATCCTACTGAATGAAGGACTACGTGCATGGTTAGCACCTGCC 160852 || ||||||||||| || || || | || ||||| | || || ||| | || || Sbjct 24014 ACTTTCTACACCAAAAATATTCTCTTAAACGAAGGTATTCGCGCTTGGATGGCGGCTCAA 24073 Query 160853 GACCAACCCCATGAGAACTTTATCTTCCCAGAAGAAGTTCTTCCTAGAGGCAACGCCCTT 160912 || || || ||||| ||| |||| ||||| || || ||||| || | || ||||| ||| Sbjct 24074 GATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCTT 24133 Query 160913 TAAT 160916 |||| Sbjct 24134 TAAT 24137 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 552467819744960