Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20americanum_20[genbank_20GCA_5F900188915.1_202017-07-22] 837 sequences; 9,013,692 total letters Query= NC_027132.1 Length=190768 Score E Sequences producing significant alignments: (Bits) Value seq83 598 5e-166 seq309 506 2e-138 >seq83 Length=41462 Score = 598 bits (662), Expect = 5e-166 Identities = 729/989 (74%), Gaps = 4/989 (0%) Strand=Plus/Plus Query 178861 TTCTGCGAGTGGGTAACGTCCACCAACAATCGTTTGTATGTTGGTTGGTTCGGTGTGCTG 178920 ||||| | ||| |||| ||| | || ||| | || |||| ||||| ||||| || Sbjct 3500 TTCTGTAACTGGATAACTAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTG 3559 Query 178921 ATGATTCCTACGTTGCTTGCTGCAACTATCTGT-TTCATCGTTGCTTTCGTAGCAGCACC 178979 ||||| ||||| || | | |||||| ||||| || || |||| ||| | || || || Sbjct 3560 ATGATCCCTACCTTATTGACGGCAACT-TCTGTATTTATTATTGCCTTCATTGCTGCTCC 3618 Query 178980 TCCCGTCGATATTGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGAAACAA 179039 ||| || || ||||| || || |||||||| || | || || || | || |||||||| Sbjct 3619 TCCAGTAGACATTGATGGTATTCGTGAACCTGTTTCAGGGTCTCTACTTTACGGAAACAA 3678 Query 179040 CATCATCTCTGGTGCTGTTGTCCCAAGTTCAAACGCAATTGGTCTACACTTCTACCCCAT 179099 || || || ||||| || | || | ||| || || ||| |||| || ||||| || Sbjct 3679 TATTATTTCCGGTGCCATTATTCCTACTTCTGCAGCTATAGGTTTACATTTTTACCCAAT 3738 Query 179100 CTGGGAAGCAGCATCACTCGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTGGTAGT 179159 ||||||||| ||||| | ||||| ||| | || ||||||||||||| |||| | || Sbjct 3739 CTGGGAAGCGGCATCCGTTGATGAATGGTTATACAACGGTGGTCCTTATGAACTAATTGT 3798 Query 179160 CTTCCACTTCCTTATCGGCATCTATGCCTATATGGGACGTGAGTGGGAACTTTCTTACCG 179219 | |||||| | | ||| | | || ||||| ||||||||||| ||| | ||| Sbjct 3799 TCTACACTTCTTACTTGGCGTAGCTTGTTACATGGGTCGTGAGTGGGAGCTTAGCTTCCG 3858 Query 179220 TCTAGGTATGCGTCCATGGATCTGTGTTGCATACTCTGCACCAGTCGCTGCTGCGAGTGC 179279 ||| |||||||| || ||||| ||||||||| || || || || || ||||| | || Sbjct 3859 TCTGGGTATGCGACCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACCGC 3918 Query 179280 AGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCTATGCCTCTTGGTAT 179339 ||| ||| | |||| || |||||||||| ||| ||||||| ||||||||| || || Sbjct 3919 AGTTTTCTTGATCTACCCAATCGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAAT 3978 Query 179340 CTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAACACAACATCCTTATGCACCC 179399 |||||||||||| || | |||| |||||||||| || || |||||||||||||||||||| Sbjct 3979 CTCTGGTACTTTCAATTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCC 4038 Query 179400 GTTCCATATGCTCGGTGTTGCTGGGGTATTCGGTGGATCTCTTTTCTCTGCTATGCACGG 179459 || || ||| | || || ||||| |||||||| || || || ||| ||||||||| || Sbjct 4039 ATTTCACATGTTAGGCGTGGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGG 4098 Query 179460 AAGTCTCGTTACTTCCTCGCTTGTTC-GTGAAACAACTGAGACAGAGTCACAGAACTATG 179518 | || |||| || | ||| || | ||||| || || | || || || | | Sbjct 4099 TTCCTTGGTAACTT-CTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAG 4157 Query 179519 GTTATAAGTTCGGACAAGAAGAAGAGACCTATAACATCGTCGCAGCACATGGCTACTTCG 179578 |||| | ||||| ||||| ||||| || ||||| ||||| || || ||||| || || | Sbjct 4158 GTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCCGCTCATGGTTATTTTG 4217 Query 179579 GTCGTTTGATCTTCCAATATGCATCCTTTAACAACTCACGCTCTTTGCACTTCTTCCTTG 179638 | || ||||||||||||||||| || |||||||| || || || ||||||||||| | Sbjct 4218 GCCGATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCGTTACACTTCTTCCTAG 4277 Query 179639 CTGCGTGGCCGGTTGTCGGCATCTGGTTCACTGCTCTTGGCGTGTCAACCATGGCGTTCA 179698 |||| ||||| || || || |||||||| || ||| | || | || ||||| |||| Sbjct 4278 CTGCTTGGCCTGTAGTAGGTATCTGGTTTACCGCTTTAGGTATTAGCACTATGGCTTTCA 4337 Query 179699 ACCTCAACGGTTTCAACTTCAACCAGTCCATCCTTGACGGTCAAGGACGTGTCCTTAACA 179758 |||| || |||||||| |||||||| || | ||||| |||| || ||||| |||||| Sbjct 4338 ACCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGACAGTCAGGGTCGTGTAATTAACA 4397 Query 179759 CATGGGCGGACGTATTGAACCGTGCAGGTTTGGGTATGGAAGTTATGCATGAGCGTAACG 179818 | ||||| || | | |||||||| | |||||||||||||||||||| ||||| | Sbjct 4398 CTTGGGCTGATATCATCAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATG 4457 Query 179819 CACACAACTTCCCACTCGACCTTGCTGCT 179847 | || |||||||| || ||||| |||||| Sbjct 4458 CTCATAACTTCCCTCTAGACCTAGCTGCT 4486 >seq309 Length=37764 Score = 506 bits (560), Expect = 2e-138 Identities = 706/984 (72%), Gaps = 6/984 (1%) Strand=Plus/Plus Query 180051 GACCGCTTTGTATTTGTGGGCTGGTCTGGACTACTACTTCTTCCCACTGCTTATCTTGCC 180110 ||||| || || ||||| |||||||| || ||| | || |||| ||| ||| | || Sbjct 23148 GACCGTTTCGTTTTTGTAGGCTGGTCCGGTCTATTGCTCTTTCCTTGTGCCTATTTCGCT 23207 Query 180111 ATTGGCGGTTGGCTTACTGGCACAGCTTTTGTCACGAGTTGGTACACCCACGGTCTTGCT 180170 | || |||||| | || || ||| | ||||| || ||||| ||||| || | || Sbjct 23208 GTAGGGGGTTGGTTCACAGGTACAACCTTTGTAACTTCATGGTATACCCATGGATTGGCC 23267 Query 180171 TCTTCCTATCTTGAAGG-TGCTAACTTTCTTA-CGGCAGCTGTCTCGACGCCTGCTGACG 180228 ||| ||| | ||||| ||| | ||||||| | || || || || || |||||| | Sbjct 23268 AGTTCTTATTTGGAAGGCTGCAA--TTTCTTAACTGCCGCGGTTTCTACTCCTGCTAATA 23325 Query 180229 CTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCAGGGGAATTTCCAACGGT 180288 | | | ||||| | | |||| ||||| ||||| | || || |||| || | Sbjct 23326 GTTTAGCACATTCGTTATTGTTACTATGGGGGCCTGAAGCACAAGGAGATTTTACTCGTT 23385 Query 180289 GGTGCCAACTTGGGGGACTCTGGAATTTCGTGGCTCTCCACGGTGCCTTCGCCCTAATTG 180348 |||| ||| | ||||| || |||| ||| || |||||||| || || || | |||||| | Sbjct 23386 GGTGTCAATTGGGGGGTCTGTGGACTTTTGTTGCTCTCCATGGAGCTTTTGGCCTAATAG 23445 Query 180349 GATTT-ATGCTACGCCAGTTTGAACTGGCACGTCTTATTGGTATCCGTCCTTACAATGCT 180407 | ||| ||| |||| || || || || || || | || | | ||||| ||||| Sbjct 23446 GNTTTTATGTTACGTCAATTCGAGCTTGCTCGATCTGTTCAATTGAGACCTTATAATGCA 23505 Query 180408 ATTGCATTCTCTGGTCCTATCGCTGTATTTGTCAGCGTATTTCTCATCTACCCACTGGGT 180467 || |||||||||||||| || ||||| ||||| |||||||| || || ||||| ||| Sbjct 23506 ATCGCATTCTCTGGTCCAATTGCTGTTTTTGTTTCTGTATTTCTGATTTATCCACTAGGT 23565 Query 180468 CAGTCCAGTTGGTTCTTTGCTCCCTCTTTTGGGGTAGCAGCAATCTTTAGATTCCTACTC 180527 ||||| ||||||||||||| || |||||| |||||||| || ||| ||||| | || Sbjct 23566 CAGTCTGGTTGGTTCTTTGCACCTAGTTTTGGTGTAGCAGCTATATTTCGATTCATCCTA 23625 Query 180528 TTTCTTCAGGGTTTCCACAACTGGACCCTCAACCCCTTCCATATGATGGGAGTTGCTGGT 180587 ||| |||| || || || || |||||| | |||||||| ||||||||||||||||| ||| Sbjct 23626 TTTTTTCAAGGGTTTCATAATTGGACCTTGAACCCCTTTCATATGATGGGAGTTGCCGGT 23685 Query 180588 ATACTAGGTGGAGCATTGCTATCAGCAATCCATGGCGTAACTGTGGAGAACACACTGTAT 180647 || | || | || ||||||| || || ||||| | || || || || || | | | Sbjct 23686 GTATTGGGCGCTGCTTTGCTATGCGCCATTCATGGTGCTACCGTAGAAAATACTTTATTT 23745 Query 180648 GAAGATGGAGAACAAGCAAACACCTTTAAGGCATTTGATTCAACGCAAGAGGAGGAAACT 180707 ||||| || || ||||| || || || ||| | |||| |||| || |||||| Sbjct 23746 GAAGACGGTGATGGTGCAAATACATTCCGTGCTTTTAACCCAACTCAAGCCGAAGAAACT 23805 Query 180708 TACTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGGTATTGCATTTTCTAAC 180767 || || |||||||| || |||||||| ||||| || ||||| || |||| ||||| || Sbjct 23806 TATTCAATGGTCACCGCTAACCGCTTTTGGTCCCAAATCTTTGGGGTTGCTTTTTCCAAT 23865 Query 180768 AAGCGGTGGCTTCATTTTTTCATGTTGTTTGTGCCTGTTATGGGTCTATGGACATCCTCT 180827 || || ||| | ||||| || ||||| ||||| || || | ||| |||||| || Sbjct 23866 AAACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACCGGTTTATGGATGAGTGCT 23925 Query 180828 ATTGGCATTATTGGTCTTGCTCTCAACCTTCGTGCTTACGA-TTTCGTGAGTCAAGAGAT 180886 |||| | | ||||| ||||| ||||| ||||| || || || ||| ||| || || Sbjct 23926 CTTGGAGTAGTCGGTCTAGCTCTGAACCTACGTGCCTATGACTTNCGTTTCTCAGGAAAT 23985 Query 180887 CAGAGCAGCAGAAGATCCTGAGTTCGAGACGTTCTACACCAAGAACATCCTATTGAATGA 180946 | ||||| ||||||||||| || ||||| ||||||||||| || || || || || || Sbjct 23986 TCGCGCAGCGGAAGATCCTGAATTTGAGACTTTCTACACCAAAAATATTCTCTTAAACGA 24045 Query 180947 AGGACTACGTGCATGGTTGGCACCTGCCGATCAACCACACGAAAACTTCATCTTCCCTGA 181006 ||| | || || ||| |||| || ||||| || || |||||| | || |||||||| Sbjct 24046 AGGTATTCGCGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGA 24105 Query 181007 AGAAGTTCTACCAAGAGGTAACGC 181030 || ||||||||| | || ||||| Sbjct 24106 GGAGGTTCTACCACGTGGAAACGC 24129 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 610323214426560