Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20americanum_20[genbank_20GCA_5F900188915.1_202017-07-22] 837 sequences; 9,013,692 total letters Query= NC_028663.1 Length=188632 Score E Sequences producing significant alignments: (Bits) Value seq83 551 7e-152 seq692 136 5e-27 >seq83 Length=41462 Score = 551 bits (610), Expect = 7e-152 Identities = 696/954 (73%), Gaps = 2/954 (0%) Strand=Plus/Plus Query 176147 TTTACGTTGGTTGGTTTGGTGTGCTCATGATTCCATGTCTGCTCACTGCTGCAGCATGT- 176205 ||||| |||| ||||||||||| | ||||| || | | || || | | ||| Sbjct 3534 TTTACATTGGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACGGCAACTTC-TGTA 3592 Query 176206 TTTATCGTTGCATTTATTGCAGCACCACCTGTCGATATCGACGGTATTCGCGAACCAGTA 176265 ||||| |||| || ||||| || || || || || || || |||||||| ||||| || Sbjct 3593 TTTATTATTGCCTTCATTGCTGCTCCTCCAGTAGACATTGATGGTATTCGTGAACCTGTT 3652 Query 176266 GCAGGATCTCTACTCTATGGAAACAACATCATCTCAGGAGCAGTCGTCCCAAGCTCAAAC 176325 |||| |||||||| || |||||||| || || || || || | | || | || Sbjct 3653 TCAGGGTCTCTACTTTACGGAAACAATATTATTTCCGGTGCCATTATTCCTACTTCTGCA 3712 Query 176326 GCAATCGGACTACACTTCTACCCAATCTGGGAAGCAGCAACAGTTGACGAATGGCTCTAC 176385 || || || |||| || ||||||||||||||||| ||| | ||||| |||||| | ||| Sbjct 3713 GCTATAGGTTTACATTTTTACCCAATCTGGGAAGCGGCATCCGTTGATGAATGGTTATAC 3772 Query 176386 AATGGAGGACCATACCAACTCGTTGTATTCCACTTCCTTATCGGTATCTCAGCTTACATG 176445 || || || || || |||| |||| | |||||| | | || | | ||||||| Sbjct 3773 AACGGTGGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGGCGTAGCTTGTTACATG 3832 Query 176446 GGACGCCAATGGGAACTTAGTTACAGACTAGGCATGCGTCCTTGGATCTGTGTTGCATAC 176505 || || | ||||| ||||| | | | || || ||||| |||||||| ||||||||| Sbjct 3833 GGTCGTGAGTGGGAGCTTAGCTTCCGTCTGGGTATGCGACCTTGGATTGCTGTTGCATAT 3892 Query 176506 TCTGCACCAGTATCTGCAGCGATGGCAGTTTTCCTCGTCTATCCATTCGGTCAAGGATCT 176565 || || || || | || || | ||||||||| | |||| ||| ||||||||||| | Sbjct 3893 TCAGCTCCTGTTGCAGCTGCTACCGCAGTTTTCTTGATCTACCCAATCGGTCAAGGAAGT 3952 Query 176566 TTCTCTGATGGTATGCCTCTTGGCATTTCAGGTACATTCAACTTTATGTTTGTATTCCAA 176625 || ||||||||||||||||| || || || ||||| ||||| || ||| |||||||||| Sbjct 3953 TTTTCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAATTTCATGATTGTATTCCAG 4012 Query 176626 GCAGAGCACAACATTCTAATGCACCCATTCCATATGCTTGGAGTAGCAGGTGTGTTTGGT 176685 || ||||||||||| || ||||||||||| || ||| | || || || ||||| || || Sbjct 4013 GCTGAGCACAACATCCTTATGCACCCATTTCACATGTTAGGCGTGGCTGGTGTATTCGGC 4072 Query 176686 GGATCTCTTTTCTCAGCAATGCACGGAAGTCTTGTTACTTCTTCACTTGTTAGAGAGACA 176745 || || || ||| || ||||| || | || |||||| | | || || || Sbjct 4073 GGCTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACC 4132 Query 176746 ACCGAAAACGAATCACAAAACTACGGTTACAAATTCGGACAAGAAGAAGAGACATACAAC 176805 || ||||| ||||| || | ||||||| |||||| ||||| ||||| || || || Sbjct 4133 ACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAACTTATAAT 4192 Query 176806 ATTGTAGCTGCACACGGTTACTTTGGTCGTCTTATCTTCCAGTATGCTTCTTTCAATAAC 176865 || ||||| || || ||||| ||||| || | |||||||| |||||| |||||| ||| Sbjct 4193 ATCGTAGCCGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTTCAACAAC 4252 Query 176866 TCAAGAAGTCTTCACTTCTTCCTTGCAGCATTCCCAGTTGTTTGCATCTGGTTTACTGCA 176925 || | | ||||||||||| || || | || || || | ||||||||||| || Sbjct 4253 TCTCGTTCGTTACACTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATCTGGTTTACCGCT 4312 Query 176926 ATGGGTGTTTGCACAATGGCATTCAACCTTAACGGTTTCAACTTCAACCAGTCTGTCTTA 176985 | ||| || |||| ||||| |||||||| || |||||||| |||||||| ||||| | Sbjct 4313 TTAGGTATTAGCACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCTGTAGTT 4372 Query 176986 GACAACTCTGGTAAAGTGATTCCTACATGGGGAGATATCCTTAACCGTGCAAACCTTGGT 177045 |||| ||| || ||| || |||| |||||| | |||||||| ||||||||| Sbjct 4373 GACAGTCAGGGTCGTGTAATTAACACTTGGGCTGATATCATCAACCGTGCTAACCTTGGT 4432 Query 177046 ATGGAAGTTATGCACGAGCGTAATGCTCACAACTTCCCACTTGACCTTGCTGCT 177099 |||||||||||||| || ||||||||||| |||||||| || ||||| |||||| Sbjct 4433 ATGGAAGTTATGCATGAACGTAATGCTCATAACTTCCCTCTAGACCTAGCTGCT 4486 Score = 136 bits (150), Expect = 5e-27 Identities = 206/289 (71%), Gaps = 8/289 (3%) Strand=Plus/Minus Query 19295 ACCTGTAACAGTACAGTATCCTTACGAGAAACTCATACCGTCAGAGAGATACCGTGGTCG 19354 ||| ||||| | || || || ||||| ||| | || | || || | | ||| || || Sbjct 40125 ACCGGTAACTATTCAATACCCCTACGAAAAATTGATCACATCGGAACGTTTCCGAGGCCG 40066 Query 19355 TATACACTATGAGTTTGACAAGTGTATCGCCTGTGAGGTGTGTGTAAGAGTATGCCCTAT 19414 ||||||| ||| ||||| || || || || ||||| || ||||| | ||||| ||||| Sbjct 40065 AATACACTTTGAATTTGATAAATGCATTGCTTGTGAAGTATGTGTGCGTGTATGTCCTAT 40006 Query 19415 CAATCTACCAGTGGTGGATTGGGTGATG--AACAAACAGACAAAGAAGAAAGAA--CTTA 19470 || |||| || || |||||| | || ||| | | | || || || || |||| Sbjct 40005 AGATTTACCCGTTGTTGATTGGAAGTTGGAAACCGATATTCGAAAAA-AACGATTGCTTA 39947 Query 19471 GAAATTATTCGATAGACTTTGGAGCATGTATTTTCTGCGGTAACTGCGTAGAGTATTGCC 19530 |||| || || |||||| ||||| || || ||||| ||||| |||||||||| Sbjct 39946 ---ATTACAGTATTGATTTTGGAATCTGTATATTTTGTGGTAATTGCGTTGAGTATTGCC 39890 Query 19531 CAACAAACTGTCTATCCATGACAGAAGAATATGAATTGGCTACATTTGA 19579 ||||||| ||| |||| ||||| |||||||||||| | |||| | ||| Sbjct 39889 CAACAAATTGTTTATCAATGACCGAAGAATATGAACTTTCTACTTATGA 39841 >seq692 Length=11435 Score = 136 bits (150), Expect = 5e-27 Identities = 205/289 (71%), Gaps = 7/289 (2%) Strand=Plus/Minus Query 19295 ACCTGTAACAGTACAGTATCCTTACGAGAAACTCATACCGTCAGAGAGATACCGTGGTCG 19354 ||| ||||| | || || || ||||| ||| | || | || || | | ||| || || Sbjct 4921 ACCGGTAACTATTCAATACCCCTACGAAAAATTGATCACATCGGAACGTTTCCGAGGCCG 4862 Query 19355 TATACACTATGAGTTTGACAAGTGTATCGCCTGTGAGGTGTGTGTAAGAGTATGCCCTAT 19414 ||||||| ||| ||||| || || || || ||||| || ||||| | ||||| ||||| Sbjct 4861 AATACACTTTGAATTTGATAAATGCATTGCTTGTGAAGTATGTGTGCGTGTATGTCCTAT 4802 Query 19415 CAATCTACCAGTGGTGGATTGGGTGATG--AACAAACAGACAAAGAAGAAAGAA--CTTA 19470 || |||| || || |||||| | || ||| | | | || || || || |||| Sbjct 4801 AGATTTACCCGTTGTTGATTGGAAGTTGGAAACCGATATTCGAAAAAAAACGATTGCTTA 4742 Query 19471 GAAATTATTCGATAGACTTTGGAGCATGTATTTTCTGCGGTAACTGCGTAGAGTATTGCC 19530 |||| || || |||||| ||||| || || |||| ||||| |||||||||| Sbjct 4741 ---ATTACAGTATTGATTTTGGAATCTGTATATTTTGTTGTAATTGCGTTGAGTATTGCC 4685 Query 19531 CAACAAACTGTCTATCCATGACAGAAGAATATGAATTGGCTACATTTGA 19579 ||||||| ||| |||| ||||| |||||||||||| | |||| | ||| Sbjct 4684 CAACAAATTGTTTATCAATGACCGAAGAATATGAACTTTCTACTTATGA 4636 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 603488085939840