Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20americanum_20[genbank_20GCA_5F900188915.1_202017-07-22] 837 sequences; 9,013,692 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq433 102 2e-16 seq83 100 7e-16 seq579 86.0 1e-11 >seq433 Length=22214 Score = 102 bits (112), Expect = 2e-16 Identities = 100/128 (78%), Gaps = 1/128 (1%) Strand=Plus/Plus Query 7735 TTGGTAAGATTCTTTGCGTTATATCAAATTAAACCACATACTCCACCGCTTATACAATCT 7794 |||||||| ||||| || || ||| ||||||||||||| ||||||||||| | | | Sbjct 12141 TTGGTAAGGTTCTTCGCTTTGCATCGAATTAAACCACATGCTCCACCGCTTGTGCGGGCC 12200 Query 7795 TCCGTCAGTTTCTTTGAGTTTTAACCTTGCGGTCGTAGTACTCAGGTGGAATA-TTTACG 7853 |||||| || |||||||||| | |||||| |||| | | |||| || ||| || ||| Sbjct 12201 CCCGTCAATTCCTTTGAGTTTCATTCTTGCGAACGTACTCCCCAGGCGGGATACTTAACG 12260 Query 7854 CGTTAGCT 7861 |||||||| Sbjct 12261 CGTTAGCT 12268 Score = 87.8 bits (96), Expect = 4e-12 Identities = 84/104 (81%), Gaps = 3/104 (3%) Strand=Plus/Minus Query 6769 GAGAGAATGATCAGCCACATTGGGACTGAAA-ACGGCCCAAGTCTTCTAAAAG-GGCAGC 6826 ||||| ||||||||||||| ||||||||| | |||||||| | || ||| | |||||| Sbjct 12812 GAGAGGATGATCAGCCACACTGGGACTGAGACACGGCCCA-GACTCCTACGGGAGGCAGC 12754 Query 6827 AGTGGAGAATATTTGACAATGGGCGAAAGCTTGATCGAGTAATG 6870 ||||| |||| || |||||||||||||| ||| ||| |||| Sbjct 12753 AGTGGGGAATTTTCCGCAATGGGCGAAAGCCTGACGGAGCAATG 12710 >seq83 Length=41462 Score = 100 bits (110), Expect = 7e-16 Identities = 99/127 (78%), Gaps = 1/127 (1%) Strand=Plus/Minus Query 7736 TGGTAAGATTCTTTGCGTTATATCAAATTAAACCACATACTCCACCGCTTATACAATCTT 7795 ||||||| ||||| || || ||| ||||||||||||| ||||||||||| | | | Sbjct 22088 TGGTAAGGTTCTTCGCTTTGCATCGAATTAAACCACATGCTCCACCGCTTGTGCGGGCCC 22029 Query 7796 CCGTCAGTTTCTTTGAGTTTTAACCTTGCGGTCGTAGTACTCAGGTGGAATA-TTTACGC 7854 |||||| || |||||||||| | |||||| |||| | | |||| || ||| || |||| Sbjct 22028 CCGTCAATTCCTTTGAGTTTCATTCTTGCGAACGTACTCCCCAGGCGGGATACTTAACGC 21969 Query 7855 GTTAGCT 7861 ||||||| Sbjct 21968 GTTAGCT 21962 Score = 87.8 bits (96), Expect = 4e-12 Identities = 84/104 (81%), Gaps = 3/104 (3%) Strand=Plus/Plus Query 6769 GAGAGAATGATCAGCCACATTGGGACTGAAA-ACGGCCCAAGTCTTCTAAAAG-GGCAGC 6826 ||||| ||||||||||||| ||||||||| | |||||||| | || ||| | |||||| Sbjct 21421 GAGAGGATGATCAGCCACACTGGGACTGAGACACGGCCCA-GACTCCTACGGGAGGCAGC 21479 Query 6827 AGTGGAGAATATTTGACAATGGGCGAAAGCTTGATCGAGTAATG 6870 ||||| |||| || |||||||||||||| ||| ||| |||| Sbjct 21480 AGTGGGGAATTTTCCGCAATGGGCGAAAGCCTGACGGAGCAATG 21523 >seq579 Length=13019 Score = 86.0 bits (94), Expect = 1e-11 Identities = 73/90 (81%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 4470 GAATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACC 4529 ||| ||||| ||||||||||| || || ||||| ||||| |||||||| |||||||| || Sbjct 6308 GAAGATTTGTCCATCAGTAATGGAAATTACATTAGTAGGAATATAAGCCGAAACATCTCC 6249 Query 4530 TGCTTGTGTTTCGACAACAGGTAAGGCTGT 4559 | ||| ||||| || | |||||||| || Sbjct 6248 GGATTGAGTTTCAACTATTGGTAAGGCGGT 6219 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192518411220878