Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20americanum_20[genbank_20GCA_5F900188915.1_202017-07-22] 837 sequences; 9,013,692 total letters Query= NC_031235.1 Length=194437 Score E Sequences producing significant alignments: (Bits) Value seq83 688 0.0 seq309 475 4e-129 >seq83 Length=41462 Score = 688 bits (762), Expect = 0.0 Identities = 752/991 (76%), Gaps = 6/991 (1%) Strand=Plus/Plus Query 183195 CTTCTGCGAATGGATTACCAGCACTAACAACCGCCTCTATGTGGGTTGGTTTGGCACACT 183254 |||||| | ||||| || |||||| | ||||| || || | || |||||||| | Sbjct 3499 CTTCTGTAACTGGATAACTAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTT 3558 Query 183255 GATGATTCCAACTCTGTTGGCAGCAACCATCTGC-TTCATCGTTGCCTTCGTCGCTGCTC 183313 |||||| || || | ||| | ||||| |||| || || |||||||| | ||||||| Sbjct 3559 GATGATCCCTACCTTATTGACGGCAACT-TCTGTATTTATTATTGCCTTCATTGCTGCTC 3617 Query 183314 CTCCTGTGGACATCGACGGCATCCGCGAACCCGTTGCTGGGTCGCTCATGTATGGAAACA 183373 |||| || ||||| || || || || ||||| ||| | ||||| || | || ||||||| Sbjct 3618 CTCCAGTAGACATTGATGGTATTCGTGAACCTGTTTCAGGGTCTCTACTTTACGGAAACA 3677 Query 183374 ACATCATCTCTGGTGCAGTTGTTCCTTCTTCCAACGCAATTGGACTTCACTTCTATCCCA 183433 | || || || ||||| || ||||| |||| || || || | || || || || | Sbjct 3678 ATATTATTTCCGGTGCCATTATTCCTACTTCTGCAGCTATAGGTTTACATTTTTACCCAA 3737 Query 183434 TCTGGGAAGCAGCATCACTCGATGAGTGGCTGTATAACGGTGGTCCTTACCAACTCGTAG 183493 |||||||||| ||||| | ||||| ||| | || |||||||||||||| |||| | | Sbjct 3738 TCTGGGAAGCGGCATCCGTTGATGAATGGTTATACAACGGTGGTCCTTATGAACTAATTG 3797 Query 183494 TCTTCCACTTCCTCATTGGCGTCTTCTGCTACATGGGTCGTGAGTGGGA-ATTGTCTTAC 183552 | | |||||| | ||||||| || |||||||||||||||||||| || ||| | Sbjct 3798 TTCTACACTTCTTACTTGGCGTAGCTTGTTACATGGGTCGTGAGTGGGAGCTTAGCTT-C 3856 Query 183553 CGTCTCGGTATGCGTCCTTGGATCTGTGTTGCTTATAGCGCACCTGTTGCTGCTGCAACC 183612 ||||| |||||||| |||||||| |||||| ||| || |||||||| ||||| ||| Sbjct 3857 CGTCTGGGTATGCGACCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACC 3916 Query 183613 GCTGTCTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTTAGTGATGGTATGCCCCTGGGT 183672 || || ||| || |||| || |||||||||| |||| |||||||||||| || || Sbjct 3917 GCAGTTTTCTTGATCTACCCAATCGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGA 3976 Query 183673 ATCAGTGGCACCTTTAACTATATGCTTGTCTTCCAAGCAGAGCACAACATCCTGATGCAC 183732 ||| ||| || || || | ||| |||| ||||| || |||||||||||||| |||||| Sbjct 3977 ATCTCTGGTACTTTCAATTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCAC 4036 Query 183733 CCCTTCCACATGCTGGGTGTCGCTGGTGTCTTCGGTGGTTCTCTGTTCAGTGCAATGCAC 183792 || || |||||| | || || |||||||| ||||| || || || |||||||| ||||| Sbjct 4037 CCATTTCACATGTTAGGCGTGGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCAT 4096 Query 183793 GGTTCTCTGGTTACTTCCTCGCTGGTTC-GTGAAACCACTGAGTCTGAGTCACAGAACTA 183851 ||||| |||| |||| || | | | || | |||||||| || ||| || || | Sbjct 4097 GGTTCCTTGGTAACTT-CTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGA 4155 Query 183852 TGGTTACAAGTTCGGTCAAGAAGAAGAGACCTACAACATTGTCGCTGCTCATGGATACTT 183911 ||||||| ||||||||||| ||||| || || || || || || |||||||| || || Sbjct 4156 AGGTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCCGCTCATGGTTATTT 4215 Query 183912 TGGTCGTCTGATCTTCCAGTATGCTTCGTTTAACAATTCTCGTTCTCTTCACTTCTTCCT 183971 ||| || |||||||||| |||||| || ||||| |||||||| | ||||||||||| Sbjct 4216 TGGCCGATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCGTTACACTTCTTCCT 4275 Query 183972 TGCTGCTTGGCCAGTGGTCGGCATCTGGTTTACTGCTCTTGGTGTTAGCACTATGGCATT 184031 ||||||||||| || || || ||||||||||| ||| | ||| ||||||||||||| || Sbjct 4276 AGCTGCTTGGCCTGTAGTAGGTATCTGGTTTACCGCTTTAGGTATTAGCACTATGGCTTT 4335 Query 184032 TAACCTGAATGGTTTTAACTTCAACCAGTCCATCATTGATGGTCAAGGTCGTGTCCTGAA 184091 ||||| |||||||| || |||||||| || | |||| |||| |||||||| | || Sbjct 4336 CAACCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGACAGTCAGGGTCGTGTAATTAA 4395 Query 184092 CACCTGGGCAGACGTTCTCAACCGTGCTGGTCTTGGCATGGAAGTGATGCACGAGCGTAA 184151 ||| ||||| || | ||||||||||| ||||| |||||||| ||||| || ||||| Sbjct 4396 CACTTGGGCTGATATCATCAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAA 4455 Query 184152 TGCTCACAACTTCCCTCTCGACCTTGCTGCT 184182 |||||| ||||||||||| ||||| |||||| Sbjct 4456 TGCTCATAACTTCCCTCTAGACCTAGCTGCT 4486 >seq309 Length=37764 Score = 475 bits (526), Expect = 4e-129 Identities = 714/1007 (71%), Gaps = 6/1007 (1%) Strand=Plus/Plus Query 185971 TGGATGACTGGCTTAAACGCGACCGCTTTGTCTTTGTGGGCTGGTCTGGATTACTTCTTT 186030 ||||||||||| | | ||||| || || ||||| |||||||| || || | || | Sbjct 23128 TGGATGACTGGTTACGGAGGGACCGTTTCGTTTTTGTAGGCTGGTCCGGTCTATTGCTCT 23187 Query 186031 TTCCCACTGCTTATATGGCAATTGGTGGCTGGCTTACTGGCACAACGTTTGTTACGAGCT 186090 |||| ||| ||| | || | || || ||| | || || ||||| ||||| || | Sbjct 23188 TTCCTTGTGCCTATTTCGCTGTAGGGGGTTGGTTCACAGGTACAACCTTTGTAACTTCAT 23247 Query 186091 GGTATACCCACGGGTTGGCGTCTTCTTACCTTGAGGG-TGCTAATTTTCTCACGGCAGCA 186149 |||||||||| || ||||| |||||| | || || ||| ||||| | || || || Sbjct 23248 GGTATACCCATGGATTGGCCAGTTCTTATTTGGAAGGCTGC-AATTTCTTAACTGCCGCG 23306 Query 186150 GTGTCAACTCCTGCTGACGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCT 186209 || || ||||||||| | | | | ||||| | | |||| ||||| ||||| | Sbjct 23307 GTTTCTACTCCTGCTAATAGTTTAGCACATTCGTTATTGTTACTATGGGGGCCTGAAGCA 23366 Query 186210 CAAGGAGATATCATCCGCTGGTTCCAACTTGGGGGACTCTGGAATTTTGTGGCGCTCCAC 186269 ||||||||| | | || |||| ||| | ||||| || |||| |||||| || ||||| Sbjct 23367 CAAGGAGATTTTACTCGTTGGTGTCAATTGGGGGGTCTGTGGACTTTTGTTGCTCTCCAT 23426 Query 186270 GGAGCCTTTGCTCTCATAGG-TTTCATGCTGCGACAGTTTGAAATCAGTCG-TCTCGTAG 186327 ||||| |||| || ||||| ||| ||| | || || || || | ||| ||| | Sbjct 23427 GGAGCTTTTGGCCTAATAGGNTTTTATGTTACGTCAATTCGAGCTTGCTCGATCTGTTCA 23486 Query 186328 GTATCCGTCCATACAATGCCATTGCTTTTTCTGGTCCTATCGCTGTCTTTGTTAGTGTAT 186387 | | | || || ||||| || || || |||||||| || ||||| |||||| ||||| Sbjct 23487 AT-TGAGACCTTATAATGCAATCGCATTCTCTGGTCCAATTGCTGTTTTTGTTTCTGTAT 23545 Query 186388 TCCTCATCTACCCTCTTGGACAGTCCTCATGGTTCTTCGCTCCCTCCTTTGGAGTCGCAG 186447 | || || || || || || ||||| |||||||| || || ||||| || |||| Sbjct 23546 TTCTGATTTATCCACTAGGTCAGTCTGGTTGGTTCTTTGCACCTAGTTTTGGTGTAGCAG 23605 Query 186448 CAATCTTTAGATTCCTGTTGTTCCTCCAAGGATTCCACAACTGGACGTTGAATCCATTCC 186507 | || ||| ||||| | | || | ||||| || || || ||||| ||||| || || | Sbjct 23606 CTATATTTCGATTCATCCTATTTTTTCAAGGGTTTCATAATTGGACCTTGAACCCCTTTC 23665 Query 186508 ACATGATGGGTGTAGCAGGTATCCTTGGTGGTGCTCTGCTGTCAGCAATCCATGGTGTTA 186567 | |||||||| || || ||| | | || | |||| |||| | || || ||||||| || Sbjct 23666 ATATGATGGGAGTTGCCGGTGTATTGGGCGCTGCTTTGCTATGCGCCATTCATGGTGCTA 23725 Query 186568 CTGTAGAAAATACTCTTTATGAAGATGGCGAACAAGCAAACACATTCAAAGCATTCGATA 186627 | |||||||||||| | | |||||| || || ||||| |||||| || || | Sbjct 23726 CCGTAGAAAATACTTTATTTGAAGACGGTGATGGTGCAAATACATTCCGTGCTTTTAACC 23785 Query 186628 CGACGCAAGAAGAAGAAACCTATTCGATGGTCACTGCGAACAGATTCTGGTCACAGATCT 186687 | || |||| |||||||| ||||| |||||||| || ||| | || ||||| || |||| Sbjct 23786 CAACTCAAGCCGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCCCAAATCT 23845 Query 186688 TCGGAATTGCGTTTAGCAATAAGCGTTGGCTTCATTTCTTCATGCTCTTTGTTCCTGTTA 186747 | || |||| ||| |||||| |||||| | |||||||| ||| | ||||| || || | Sbjct 23846 TTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAA 23905 Query 186748 TGGGTCTTTGGACCTCTTCCATTGGCATTATTGGTCTTGCTCTTAACCTTCGTGCTTATG 186807 ||| | |||| | | |||| | | ||||| ||||| ||||| ||||| |||| Sbjct 23906 CCGGTTTATGGATGAGTGCTCTTGGAGTAGTCGGTCTAGCTCTGAACCTACGTGCCTATG 23965 Query 186808 ACTTT-GTAAGTCAGGAGGTGAGAGCAGCAGAGGATCCTGAGTTCGAGACGTTCTATACC 186866 |||| || |||||| | | ||||| || |||||||| || ||||| ||||| ||| Sbjct 23966 ACTTNCGTTTCTCAGGAAATTCGCGCAGCGGAAGATCCTGAATTTGAGACTTTCTACACC 24025 Query 186867 AAGAATATCCTATTGAATGAAGGTCTACGTGCCTGGATGGCACCAGTGGATCAACCACAT 186926 || ||||| || || || |||||| | || || |||||||| | ||||| || ||| Sbjct 24026 AAAAATATTCTCTTAAACGAAGGTATTCGCGCTTGGATGGCGGCTCAAGATCAGCCTCAT 24085 Query 186927 GAAAACTTTGTATTTCCTGAAGAAGTGTTGCCAAGAGGCAACGCTCT 186973 |||||| || |||| ||||| || || | ||| | || |||||||| Sbjct 24086 GAAAACCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCT 24132 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622063891588440