Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20americanum_20[genbank_20GCA_5F900188915.1_202017-07-22] 837 sequences; 9,013,692 total letters Query= NC_031242.1 Length=174307 Score E Sequences producing significant alignments: (Bits) Value seq83 719 0.0 seq309 567 8e-157 >seq83 Length=41462 Score = 719 bits (796), Expect = 0.0 Identities = 756/989 (76%), Gaps = 4/989 (0%) Strand=Plus/Plus Query 163928 TTCTGTAACTGGGTAACTTCAACCGACAATCGTTTGTATGTCGGTTGGTTCGGCGTCCTG 163987 |||||||||||| ||||| || || || ||| | || | || ||||| || || || Sbjct 3500 TTCTGTAACTGGATAACTAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTG 3559 Query 163988 ATGATTCCCTGCC-TGCTGGCAGCGACTACATGT-TTCATCATCGCCTTCATCGGTGCTC 164045 |||| ||||| || | || | || ||| | ||| || || || |||||||| | ||||| Sbjct 3560 ATGA-TCCCTACCTTATTGACGGCAACTTC-TGTATTTATTATTGCCTTCATTGCTGCTC 3617 Query 164046 CTCCTGTGGACATCGATGGCATCCGCGAACCCGTCGCTGGTTCGCTCATGTATGGAAACA 164105 |||| || ||||| ||||| || || ||||| || | || || || | || ||||||| Sbjct 3618 CTCCAGTAGACATTGATGGTATTCGTGAACCTGTTTCAGGGTCTCTACTTTACGGAAACA 3677 Query 164106 ACATCATCTCTGGTGCTGTTATCCCTTCTTCTAACGCTATCGGTCTGCACTTCTACCCCA 164165 | || || || ||||| |||| ||| ||||| ||||| ||| | || || ||||| | Sbjct 3678 ATATTATTTCCGGTGCCATTATTCCTACTTCTGCAGCTATAGGTTTACATTTTTACCCAA 3737 Query 164166 TCTGGGAAGCAGCAAGTCTGGACGAATGGCTCTACAACGGTGGTCCTTTCCAACTCGTTG 164225 |||||||||| ||| | || |||||| | |||||||||||||||| |||| ||| Sbjct 3738 TCTGGGAAGCGGCATCCGTTGATGAATGGTTATACAACGGTGGTCCTTATGAACTAATTG 3797 Query 164226 TGTTCCACTTCCTGATTGGCATCTATGCTTACATGGGTCGTGAGTGGGAACTTTCTTACC 164285 | | |||||| | ||||| | | ||||||||||||||||||||| ||| | || Sbjct 3798 TTCTACACTTCTTACTTGGCGTAGCTTGTTACATGGGTCGTGAGTGGGAGCTTAGCTTCC 3857 Query 164286 GTCTTGGTATGCGTCCTTGGATTTGCGTAGCATACTCTGCTCCTGTCGCTGCAGCGAGTG 164345 |||| |||||||| ||||||||| || ||||| || |||||||| || || || | | Sbjct 3858 GTCTGGGTATGCGACCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACCG 3917 Query 164346 CAGTGTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCAATGCCTCTGGGCA 164405 |||| ||| || |||| || |||||||||| ||| ||||||| |||||||| || | Sbjct 3918 CAGTTTTCTTGATCTACCCAATCGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAA 3977 Query 164406 TCTCTGGAACCTTCAACTACATGTTGGTCTTCCAGGCTGAGCACAACATCCTCATGCACC 164465 ||||||| || ||||| | |||| | || ||||||||||||||||||||||| ||||||| Sbjct 3978 TCTCTGGTACTTTCAATTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACC 4037 Query 164466 CCTTCCATATGCTCGGCGTAGCAGGTGTGTTTGGCGGTTCTCTGTTCAGTGCAATGCACG 164525 | || || ||| | ||||| || ||||| || ||||| || || |||||||| ||||| | Sbjct 4038 CATTTCACATGTTAGGCGTGGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATG 4097 Query 164526 GTTCGCTGGTTACTTCTTCGCTGGTTCGTGAGACCACCGAAAATGAGTCCCAGAACTATG 164585 |||| |||| |||||| || | | || ||||| |||||||| || || | | Sbjct 4098 GTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAG 4157 Query 164586 GTTACAAGTTTGGTCAGGAAGAAGAAACCTACAACATCGTTGCCGCTCACGGTTACTTTG 164645 |||||| || ||||| || |||||||| || || ||||| |||||||| ||||| |||| Sbjct 4158 GTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCCGCTCATGGTTATTTTG 4217 Query 164646 GTCGTCTGATTTTCCAATACGCTTCCTTCAACAACTCCCGTTCGCTGCACTTCTTCCTCG 164705 | || |||| |||||||| ||| ||||||||||| |||||| | ||||||||||| | Sbjct 4218 GCCGATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCGTTACACTTCTTCCTAG 4277 Query 164706 CAGCATGGCCTGTTGTCGGTATCTGGTTTACTGCTCTGGGCGTTAGCACCATGGCATTCA 164765 | || |||||||| || |||||||||||||| ||| | || ||||||| ||||| |||| Sbjct 4278 CTGCTTGGCCTGTAGTAGGTATCTGGTTTACCGCTTTAGGTATTAGCACTATGGCTTTCA 4337 Query 164766 ACCTCAACGGTTTCAACTTCAACCAGTCCATCATCGATGGTCAGGGTCGTGTGCTCAACA 164825 |||| || |||||||| |||||||| || | | || ||||||||||||| | |||| Sbjct 4338 ACCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGACAGTCAGGGTCGTGTAATTAACA 4397 Query 164826 CCTGGGCAGACGTTCTCAACCGTGCTGGTCTGGGCATGGAAGTGATGCACGAGCGTAATG 164885 | ||||| || | ||||||||||| || || |||||||| ||||| || ||||||| Sbjct 4398 CTTGGGCTGATATCATCAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATG 4457 Query 164886 CTCACAACTTCCCTCTCGACCTTGCTGCT 164914 |||| ||||||||||| ||||| |||||| Sbjct 4458 CTCATAACTTCCCTCTAGACCTAGCTGCT 4486 >seq309 Length=37764 Score = 567 bits (628), Expect = 8e-157 Identities = 728/995 (73%), Gaps = 8/995 (1%) Strand=Plus/Plus Query 165180 AGAGACCGTTTCGTTTTTGTTGGCTGGTCTGGACTTCTTCTTTTTCCCACTGCTTATCTT 165239 || ||||||||||||||||| |||||||| || || | || ||||| ||| ||| | Sbjct 23145 AGGGACCGTTTCGTTTTTGTAGGCTGGTCCGGTCTATTGCTCTTTCCTTGTGCCTATTTC 23204 Query 165240 GCTCTTGGGGGTTGGCTTACTGGGACTACTTTCGTCACGAGTTGGTATACTCACGGACTT 165299 ||| | ||||||||| | || || || || || || || |||||||| || ||| | Sbjct 23205 GCTGTAGGGGGTTGGTTCACAGGTACAACCTTTGTAACTTCATGGTATACCCATGGATTG 23264 Query 165300 GCGAGTTCCTATCTTGAGGG-TGCAAACTTTCTTA-CTGCGGCAGTTTCTACTCCAGCAG 165357 || ||||| ||| | || || ||||| ||||||| |||| || ||||||||||| || Sbjct 23265 GCCAGTTCTTATTTGGAAGGCTGCAA--TTTCTTAACTGCCGCGGTTTCTACTCCTGCTA 23322 Query 165358 ACGCTATGGGTCATTCTCTTCTGCTTCTATGGGGTCCTGAGTCTCAAGGGGACTTCATCC 165417 | | | | ||||| | || | |||||||| ||||| | ||||| || || | | Sbjct 23323 ATAGTTTAGCACATTCGTTATTGTTACTATGGGGGCCTGAAGCACAAGGAGATTTTACTC 23382 Query 165418 GCTGGTGCCAACTTGGGGGACTCTGGACTTTTGTGGCGCTCCACGGAGCCTTTGCACTTA 165477 | ||||| ||| | ||||| || ||||||||||| || ||||| ||||| |||| || | Sbjct 23383 GTTGGTGTCAATTGGGGGGTCTGTGGACTTTTGTTGCTCTCCATGGAGCTTTTGGCCTAA 23442 Query 165478 TAGG-TTTCATGCTTCGCCAGTTTGAACTGGCACGA-CTTATCGGTATTCGTCCTTACAA 165535 |||| ||| ||| | || || || || || || ||| || || | | | ||||| || Sbjct 23443 TAGGNTTTTATGTTACGTCAATTCGAGCTTGCTCGATCTGTTCAAT-TGAGACCTTATAA 23501 Query 165536 TGCTATTGCTTTCTCTGGTCCTATTGCTGTATTCGTTAGTGTTTTTCTTATGTATCCTCT 165595 ||| || || ||||||||||| |||||||| || ||| ||| ||||| || ||||| || Sbjct 23502 TGCAATCGCATTCTCTGGTCCAATTGCTGTTTTTGTTTCTGTATTTCTGATTTATCCACT 23561 Query 165596 GGGACAATCGTCCTGGTTCTTCGCACCGTCGTTCGGGGTCGCAGCAATCTTCCGATTCCT 165655 || || || |||||||| ||||| || || || ||||| || || |||||| | Sbjct 23562 AGGTCAGTCTGGTTGGTTCTTTGCACCTAGTTTTGGTGTAGCAGCTATATTTCGATTCAT 23621 Query 165656 GCTCTTCCTCCAAGGGTTCCATAACTGGACGCTGAATCCCTTTCACATGATGGGCGTAGC 165715 || || | |||||||| ||||| ||||| |||| |||||||| |||||||| || || Sbjct 23622 CCTATTTTTTCAAGGGTTTCATAATTGGACCTTGAACCCCTTTCATATGATGGGAGTTGC 23681 Query 165716 AGGTATCTTAGGCGGAGCATTGCTTTCTGCCATTCATGGTGTTACAGTAGAGAATACTTT 165775 ||| | || |||| || ||||| | ||||||||||||| ||| ||||| |||||||| Sbjct 23682 CGGTGTATTGGGCGCTGCTTTGCTATGCGCCATTCATGGTGCTACCGTAGAAAATACTTT 23741 Query 165776 GTATGAAGATGGTGAACAAGCAAACACTTTCAAAGCATTTGATAGTACTCAGGAAGAGGA 165835 | |||||| ||||| ||||| || ||| || ||| | ||||| | || || Sbjct 23742 ATTTGAAGACGGTGATGGTGCAAATACATTCCGTGCTTTTAACCCAACTCAAGCCGAAGA 23801 Query 165836 AACTTATTCCATGGTCACTGCTAACCGTTTCTGGTCTCAGATTTTTGGTATTGCTTTCAG 165895 ||||||||| |||||||| |||||||| || ||||| || || ||||| ||||||| Sbjct 23802 AACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCCCAAATCTTTGGGGTTGCTTTTTC 23861 Query 165896 CAATAAGCGTTGGCTTCACTTCTTTATGCTCTTTGTTCCTGTCATGGGACTTTGGACAAG 165955 |||||| |||||| | || ||||||||| | ||||| || || | || | |||| || Sbjct 23862 CAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACCGGTTTATGGATGAG 23921 Query 165956 TTCTATTGGTATCATTGGTCTCGCACTCAATCTTCGTGCTTATGA-TTTTGTGTCTCAGG 166014 | || |||| | | ||||| || || || || ||||| ||||| || || ||||||| Sbjct 23922 TGCTCTTGGAGTAGTCGGTCTAGCTCTGAACCTACGTGCCTATGACTTNCGTTTCTCAGG 23981 Query 166015 AGATTAGAGCTGCTGAGGATCCAGAGTTTGAAACGTTCTATACGAAAAACATCCTCCTTA 166074 | ||| | || || || ||||| || ||||| || ||||| || ||||| || ||| | | Sbjct 23982 AAATTCGCGCAGCGGAAGATCCTGAATTTGAGACTTTCTACACCAAAAATATTCTCTTAA 24041 Query 166075 ATGAAGGACTCCGTGCCTGGTTGGCTCCTGTAGACCAACCTCATGAGAACTTTGTGTTCC 166134 | ||||| | || || ||| |||| || ||| || |||||||| ||| || | |||| Sbjct 24042 ACGAAGGTATTCGCGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCC 24101 Query 166135 CTGAAGAAGTCTTGCCAAGAGGCAACGCACTTTAA 166169 |||| || || | ||| | || ||||| |||||| Sbjct 24102 CTGAGGAGGTTCTACCACGTGGAAACGCTCTTTAA 24136 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 557648565540840