Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20arcanum_20[genbank_20GCA_5F000612985.1_202014-03-22] 46,594 sequences; 665,186,956 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq11273 113 7e-20 seq8951 100 4e-16 seq30 87.8 3e-12 seq29 87.8 3e-12 >seq11273 Length=79338 Score = 113 bits (124), Expect = 7e-20 Identities = 172/240 (72%), Gaps = 4/240 (2%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597 |||||||||||| | |||||| | ||||| || || || ||| | ||| |||| || | Sbjct 31964 ATGCAAATATTTGTCAAGACATTGACAGGGAAGACAATTACTTTGGAGGTTGAGAGTTCA 32023 Query 124598 TGATACAATTTCTAAT-TTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATC 124656 ||||| || ||| ||||| || || || ||||| || || ||||| || || || | Sbjct 32024 -GATACTATCGACAATGTTAAAGCA-AAGATCCAAGACAAGGAGGGTATTCCTCCAGACC 32081 Query 124657 AACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATA 124716 | || || | || ||||| ||||| ||| | |||||| | | || || | |||||| | Sbjct 32082 AGCAGAGATTGATCTTTGCTGGAAAGCAACTTGAGGATGGAAGGACGTTGGCAGATTACA 32141 Query 124717 ATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAATT 124776 | ||||| ||||||||||| |||| | ||| | || | ||||||| || ||| || Sbjct 32142 ACATTCAGAAAGAATCAACCCTGCACCTTGTTCTTCGCCTTAGAGGTGGCATGCAAATTT 32201 Score = 107 bits (118), Expect = 3e-18 Identities = 164/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597 |||||||| ||| | || || || || || || ||||||||| | ||| | || ||| | Sbjct 31508 ATGCAAATCTTTGTTAAAACTCTGACCGGAAAGACTATAACTCTTGAGGTCGAGAGCTCA 31567 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 || || ||| |||| | ||| ||||||||||| || |||||||| || || || || Sbjct 31568 -GACACCATTGATAATGTCAAAGCTAAAATTCAAGACAAGGAAGGTATTCCCCCAGACCA 31626 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 || ||||| || ||||| || ||||| | || ||| | |||||| | | ||||| || Sbjct 31627 GCAGAGGCTGATCTTTGCTGGGAAACAGCTTGAAGATGGCCGAACACTTGCTGATTACAA 31686 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || ||||| || || || | || | || | || | || |||||||| Sbjct 31687 CATCCAAAAGGAGTCCACCCTTCACCTTGTCCTTCGCCTTCGTGGTGGTAT 31737 Score = 95.1 bits (104), Expect = 2e-14 Identities = 169/240 (70%), Gaps = 5/240 (2%) Strand=Plus/Minus Query 124540 TGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAAT 124598 ||||||||||| | |||||| | ||||| || || || ||| | ||| |||| || | Sbjct 22425 TGCAAATATTTGTTAAGACATTGACAGGGAAGACAATTACTTTGGAGGTTGAGAGTTCA- 22367 Query 124599 GATACAATTTCTAAT-TTAAAACAGAAAATTCAAGATAAA-GAAGGTATACCACCTGATC 124656 ||||| || ||| ||||| || || || ||||| ||| || ||||| || || | | Sbjct 22366 GATACTATCAACAATGTTAAAGCA-AAGATCCAAGACAAAGGAGGGTATTCCTCCAAACC 22308 Query 124657 AACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATA 124716 | || || | || ||||| ||| | ||| | || ||| | | || || | |||||| | Sbjct 22307 AGCAGAGATTGATATTTGCTGGAGAGCAACTTGAAGATGGAAGGACCTTGGCAGATTACA 22248 Query 124717 ATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAATT 124776 | ||||| ||| | ||||| |||| | ||| ||||| | ||||||| || ||| || Sbjct 22247 ACATTCAGAAACAGTCAACCCTGCACGTTGTTCTACGTCTTAGAGGTGGCATGCAAATTT 22188 >seq8951 Length=56096 Score = 100 bits (110), Expect = 4e-16 Identities = 87/108 (81%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 124629 CAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAACAATTA 124688 || ||||||||||| ||||| || ||||| || || || |||||||| ||||||||||| Sbjct 33784 CAGGATAAAGAAGGCATACCTCCGGATCAGCAGAGACTGATTTTTGCTGGAAAACAATTG 33843 Query 124689 GAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACT 124736 || ||| || |||| | | ||||| || ||||| |||||||||||| Sbjct 33844 GAAGATGGTAGAACCCTGGCTGATTACAACATTCAGAAAGAATCAACT 33891 >seq30 Length=32432 Score = 87.8 bits (96), Expect = 3e-12 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 124623 AAAATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAA 124682 |||||||| || ||||||||||| || || || || |||||| | || ||||| ||||| Sbjct 70 AAAATTCAGGACAAAGAAGGTATTCCTCCAGACCAGCAAAGGTTGATCTTTGCCGGAAAG 129 Query 124683 CAATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCAT 124742 ||| | ||||| | || || | | ||||| || || || || || ||||| | || Sbjct 130 CAACTTGAGGACGGCCGTACCCTTGCTGATTACAACATCCAGAAGGAGTCAACCCTTCAC 189 Query 124743 TTGGTTTTACGTTTACGAGGTGGTAT 124768 ||||| | ||| | |||||||| || Sbjct 190 TTGGTCCTGCGTCTCCGAGGTGGAAT 215 >seq29 Length=28306 Score = 87.8 bits (96), Expect = 3e-12 Identities = 168/244 (69%), Gaps = 3/244 (1%) Strand=Plus/Plus Query 124535 TACA-ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAA- 124592 |||| ||||| |||||| | || || || || || || ||||| || | ||| | ||| Sbjct 27709 TACAGATGCAGATATTTGTTAAAACCCTCACTGGAAAGACTATCACCCTTGAGGTGGAAA 27768 Query 124593 GCAAATGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCT 124652 || | || || ||| || | ||| || || || || || ||||| || || || Sbjct 27769 GCTCA-GACACCATTGACAACGTTAAAGCCAAGATCCAGGACAAGGAAGGCATTCCCCCA 27827 Query 124653 GATCAACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGAT 124712 || || || ||||| || ||||||||||| || | || || | || || ||| ||| Sbjct 27828 GACCAGCAGAGGCTGATCTTTGCAGGAAAGCAGCTTGAAGACGGCCGTACTCTAGCTGAT 27887 Query 124713 TATAATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAA 124772 || || ||||| || || |||||| | || ||||| | ||| | || ||||| || || Sbjct 27888 TACAACATTCAGAAGGAGTCAACTCTCCACTTGGTGCTCCGTCTTCGTGGTGGAATGCAA 27947 Query 124773 AATT 124776 | || Sbjct 27948 ATTT 27951 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755016003539200