Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20arcanum_20[genbank_20GCA_5F000612985.1_202014-03-22] 46,594 sequences; 665,186,956 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq1518 120 3e-22 seq29 102 9e-17 seq8314 100 3e-16 seq8313 98.7 1e-15 seq11273 95.1 1e-14 seq21138 93.3 5e-14 seq2718 91.5 2e-13 seq7303 82.4 9e-11 >seq1518 Length=20725 Score = 120 bits (132), Expect = 3e-22 Identities = 146/195 (75%), Gaps = 3/195 (2%) Strand=Plus/Minus Query 42994 CCTTT-TGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052 ||||| ||||| ||||||||||| ||||| || | || || |||||||| || ||||| Sbjct 13845 CCTTTCTGAATGTTGTAATCAGCTAGAGTACGTCCATCTTCGAGCTGCTTTCCGGCGAAG 13786 Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGT 43111 || | |||||||||||| | || | | ||||||| | ||| | || | ||||| | Sbjct 13785 ATCAATCGCTGCTGGTCTGGTGGAATACCTTCCTTGT-CTTGAATCTTAGCTTTGACATT 13727 Query 43112 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171 | | |||||||||||||| || || | |||||| || || ||||| || || || || Sbjct 13726 GTCAATAGTGTCGCTCGATTCAACTTCAAGCGTGATCGTCTTCCCCGTAAGAGTTTTCAC 13667 Query 43172 AAAGATTTGCATTTT 43186 ||||| |||||||| Sbjct 13666 GAAGATCTGCATTTT 13652 >seq29 Length=28306 Score = 102 bits (112), Expect = 9e-17 Identities = 167/237 (70%), Gaps = 8/237 (3%) Strand=Plus/Minus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 ||| | |||||| || | || |||||| ||||| ||||||||||| ||||| || | Sbjct 27929 ACGGAGCACCAAGTGGAGAGTTGACTCCTTCTGAATGTTGTAATCAGCTAGAGTACGGCC 27870 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087 ||| || |||||||| || || || || || | ||||||||| | || | || ||||| Sbjct 27869 GTCTTCAAGCTGCTTTCCTGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCTTCCTT 27810 Query 43088 GTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTC---GCTCGATTCCACATCGACCG 43143 |||| || | || | || | ||| | | | ||||| ||| |||||| || | | Sbjct 27809 GTCC-TGGATCTTGGCTTTAACGTTGTCAATGGTGTCTGAGCT---TTCCACCTCAAGGG 27754 Query 43144 TGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTTTACGCCGAATACAA 43200 |||| || || || || || || || ||||| || ||||| | ||| | ||| ||| Sbjct 27753 TGATAGTCTTTCCAGTGAGGGTTTTAACAAATATCTGCATCTGTACACAAAATTCAA 27697 >seq8314 Length=67656 Score = 100 bits (110), Expect = 3e-16 Identities = 142/197 (72%), Gaps = 2/197 (1%) Strand=Plus/Minus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || ||||| ||||| || || || | || || ||||||||||| ||||| Sbjct 25960 CTCCTTCTGGATGTTGTAGTCAGCTAGCGTTCGGCCATCCTCGAGCTGCTTACCGGCGAA 25901 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 || | |||||||||||| | || | || ||||||| | ||| | || | | | | | Sbjct 25900 AATCAATCGCTGCTGGTCTGGTGGAATGCCTTCCTTGT-CTTGAATCTTAGCCTTAACAT 25842 Query 43112 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170 | | | ||||| || || || || | || || || |||||||| || ||||| | Sbjct 25841 TGTCAATGGTGTCTGATGACTCTACCTCCAAGGTAATAGTCTTGCCCGTCAGGGTCTTCA 25782 Query 43171 CAAAGATTTGCATTTTT 43187 ||||||| ||||||||| Sbjct 25781 CAAAGATCTGCATTTTT 25765 >seq8313 Length=21892 Score = 98.7 bits (108), Expect = 1e-15 Identities = 141/196 (72%), Gaps = 2/196 (1%) Strand=Plus/Plus Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052 ||||| || || ||||| ||||| || || || | || || |||||||| || ||||| Sbjct 1352 TCCTTCTGGATGTTGTAGTCAGCTAGCGTTCGGCCATCCTCAAGCTGCTTTCCCGCGAAA 1411 Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 43112 || | ||||||||||| | || | || ||||||||| ||| | || | | | | | Sbjct 1412 ATCAACCGCTGCTGGTCTGGTGGAATGCCTTCCTTGTCC-TGAATCTTAGCCTTAACATT 1470 Query 43113 G-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171 | | | ||||| || || || || | || || || ||||||||||| ||||| || Sbjct 1471 GTCAATGGTGTCCGATGACTCTACCTCTAAGGTAATAGTCTTGCCCGTTAGGGTCTTCAC 1530 Query 43172 AAAGATTTGCATTTTT 43187 |||||| ||||||||| Sbjct 1531 AAAGATCTGCATTTTT 1546 >seq11273 Length=79338 Score = 95.1 bits (104), Expect = 1e-14 Identities = 111/149 (74%), Gaps = 1/149 (1%) Strand=Plus/Minus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 |||||||| ||||||||||||| ||| | || |||||| || || ||||| || || Sbjct 32418 CCTCCTCTCAAACGCAACACCAGATGGAGAGTTGACTCCTTCTGGATGTTGTAGTCTGCA 32359 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 ||||||| | |||| || || || |||||||| || || | ||||| ||||| | || Sbjct 32358 AGAGTCCTCCCGTCCTCAAGTTGTTTACCAGCAAAGATCAAACGCTGTTGGTCTGGGGGA 32299 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTT 43105 | | |||||||| | ||| | |||| || Sbjct 32298 ATACCCTCCTTGT-CTTGAATCTTTGCTT 32271 Score = 93.3 bits (102), Expect = 5e-14 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 |||||||| ||||||||||||| ||| | || |||||| || || ||||| || || Sbjct 32646 CCTCCTCTCAAACGCAACACCAGATGGAGAGTTGACTCCTTCTGGATGTTGTAGTCTGCA 32587 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 ||||||| | | || || || || |||||||| || || | ||||| ||||| | || Sbjct 32586 AGAGTCCTCCCATCCTCAAGTTGTTTACCAGCAAAGATCAAACGCTGTTGGTCTGGGGGA 32527 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGA--TTCCA 43134 | | |||||||| | ||| | |||| || | | | || | || || | || | Sbjct 32526 ATACCCTCCTTGT-CTTGAATCTTTGCTTTCACATTGTCAATG-GTATCTGAACTCTCAA 32469 Query 43135 CATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 | || | ||||| || || || || | ||||| |||||||| ||||| Sbjct 32468 CCTCCAATGTGATTGTCTTCCCAGTCAAAGTCTTCACAAAGATCTGCAT 32420 Score = 84.2 bits (92), Expect = 2e-11 Identities = 136/193 (70%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 ||| || ||||||||||| |||||||| |||| | || || || ||||| || || || Sbjct 31927 CTCTTTCTGAATATTGTAGTCAGCCAGGGTCCTTCCATCCTCGAGTTGCTTGCCGGCAAA 31868 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 || |||| ||||||||| | || | | ||||| ||| ||| |||| | | ||| Sbjct 31867 GATCAGTCTCTGCTGGTCTGGAGGAATCCCTTCCTTATCC-TGAATTTTGGCCTTCACGT 31809 Query 43112 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170 | | | || ||| ||| || || | |||||||| || || || || ||||| | Sbjct 31808 TGTCAATAGTATCGGAACTTTCAACTTCAAGGGTGATGGTCTTTCCAGTAAGTGTCTTGA 31749 Query 43171 CAAAGATTTGCAT 43183 ||||||| ||||| Sbjct 31748 CAAAGATCTGCAT 31736 Score = 82.4 bits (90), Expect = 9e-11 Identities = 138/196 (70%), Gaps = 8/196 (4%) Strand=Plus/Minus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 ||||||||| || ||||||||||| || || || | || || ||||| || ||||| || Sbjct 31699 CTCCTTTTGGATGTTGTAATCAGCAAGTGTTCGGCCATCTTCAAGCTGTTTCCCAGCAAA 31640 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCG 43110 || || | ||||||||| | || | | ||||||| | ||| |||| | ||||| Sbjct 31639 GATCAGCCTCTGCTGGTCTGGGGGAATACCTTCCTTGT-CTTGAATTTTAGCTTTGACAT 31581 Query 43111 TCGCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCT 43167 | | | ||||| |||| || || || | || || || || || || || || | Sbjct 31580 TATCAATGGTGTCTGAGCTC---TCGACCTCAAGAGTTATAGTCTTTCCGGTCAGAGTTT 31524 Query 43168 TTACAAAGATTTGCAT 43183 | |||||||||||||| Sbjct 31523 TAACAAAGATTTGCAT 31508 >seq21138 Length=28562 Score = 93.3 bits (102), Expect = 5e-14 Identities = 152/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 ||| | ||| | ||| | ||| |||||| || || ||||| || || ||||| || | Sbjct 13005 ACGGAGCACGAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGCAAGAGTACGACC 13064 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087 || || |||||||| || ||||| || | ||||||||||| | || | | ||||| Sbjct 13065 ATCCTCAAGCTGCTTTCCGGCGAAAATCAAACGCTGCTGGTCTGGGGGAATCCCTTCCTT 13124 Query 43088 GTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGAT 43147 |||| ||| || ||||| | | | |||||| || || || || | ||||| Sbjct 13125 GTCCTGGATCTTGGCTTTGACATTGTCGATGGTGTCGGAAGACTCAACCTCTAGGGTGAT 13184 Query 43148 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 43186 || || |||||||| || || || ||||| ||||| || Sbjct 13185 CGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCATCTT 13223 >seq2718 Length=65933 Score = 91.5 bits (100), Expect = 2e-13 Identities = 140/196 (71%), Gaps = 8/196 (4%) Strand=Plus/Minus Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052 ||||| || |||||||| ||||| || || || | || || ||||||||||||||||| Sbjct 45392 TCCTTCTGGATATTGTAGTCAGCAAGGGTGCGGCCATCCTCAAGCTGCTTACCAGCGAAG 45333 Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGT 43111 || | | ||||||||| | || | | |||||||||| ||| | || | ||| | | Sbjct 45332 ATCAACCTCTGCTGGTCTGGTGGGATCCCCTCCTTGTCC-TGAATCTTAGCTTTCACATT 45274 Query 43112 CGCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTT 43168 | | ||||| ||| ||||| || | |||||||| || || || | ||||| Sbjct 45273 GTCGATGGTGTCAGAACTC---TCCACCTCCAAAGTGATGGTCTTCCCGGTCAAGGTCTT 45217 Query 43169 TACAAAGATTTGCATT 43184 |||||||| |||||| Sbjct 45216 CACAAAGATCTGCATT 45201 Score = 89.7 bits (98), Expect = 6e-13 Identities = 137/193 (71%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || ||||| ||||||||||| || | || || |||||||| |||||||| Sbjct 44709 CTCCTTCTGGATGTTGTAGTCAGCCAGAGTGCGGCCATCCTCAAGCTGCTTTCCAGCGAA 44650 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 || | | ||||||||| | || | | ||||| ||| ||| || || | ||| Sbjct 44649 GATCAACCTCTGCTGGTCTGGGGGGATCCCTTCCTTATCCTGGATCTTAGCCTTCA-CGT 44591 Query 43112 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170 | | | |||||| |||||| || | |||||||| || || || || ||||| | Sbjct 44590 TGTCAATGGTGTCGGAGCTTTCCACCTCCAAAGTGATGGTCTTTCCGGTAAGAGTCTTAA 44531 Query 43171 CAAAGATTTGCAT 43183 | ||||| ||||| Sbjct 44530 CGAAGATCTGCAT 44518 Score = 89.7 bits (98), Expect = 6e-13 Identities = 159/231 (69%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 42956 TCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 43015 |||||| || | | | |||||| |||| || ||||||||| || || || || || Sbjct 45201 TCCTCCCCTCAGCCTAAGCACCAAGTGCAGGGTCGACTCCTTTTGGATGTTATAGTCCGC 45142 Query 43016 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGG 43075 || ||| || | || || |||||||| ||||| || || | | ||||||||| | || Sbjct 45141 CAAAGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAAATCAACCTCTGCTGGTCTGGGGG 45082 Query 43076 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCG---CTCGATTC 43132 | | ||||||||| ||| || |||| | | | |||||| ||| || Sbjct 45081 GATACCCTCCTTGTCTTGGATCTTGGCCTTGACATTGTCAATGGTGTCGGAGCTC---TC 45025 Query 43133 CACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || || | ||||||||||| || || || ||||| |||||||| ||||| Sbjct 45024 AACCTCCAGGGTGATGGTTTTCCCGGTAAGAGTCTTAACAAAGATCTGCAT 44974 >seq7303 Length=34339 Score = 82.4 bits (90), Expect = 9e-11 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 ||||||| | || | || ||| ||||||||| |||| |||||||||||||||| |||| Sbjct 30200 AAAAATTAACGCCGCTGCCGGGGATCGAACCCGGGTCACCCGCGTGACAGGCGGGAATAC 30259 Query 60117 TCACCACTATACTAC 60131 | ||||||||||||| Sbjct 30260 TTACCACTATACTAC 30274 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571484559134320