Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20arcanum_20[genbank_20GCA_5F000612985.1_202014-03-22] 46,594 sequences; 665,186,956 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq8314 122 7e-23 seq8313 122 7e-23 seq11273 118 8e-22 seq2718 102 6e-17 seq30 87.8 1e-12 seq29 84.2 2e-11 >seq8314 Length=67656 Score = 122 bits (134), Expect = 7e-23 Identities = 154/211 (73%), Gaps = 8/211 (4%) Strand=Plus/Minus Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCG----TCGTCCA 45188 ||| || ||| ||||||||| ||||||||||| || | ||| ||| || || | Sbjct 25972 GTGGAGGGTGGACTCCTTCTGGATGTTGTAGTC----AGCTAGCGTTCGGCCATCCTCGA 25917 Query 45189 GTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAA 45248 | || || |||||||| ||||| ||||| ||||| || || | || |||||||| || Sbjct 25916 GCTGCTTACCGGCGAAAATCAATCGCTGCTGGTCTGGTGGAATGCCTTCCTTGTCTTGAA 25857 Query 45249 TTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGC 45308 | || |||||| | | | |||| ||| ||||||| |||||| ||||||| Sbjct 25856 TCTTAGCCTTAACATTGTCAATGGTGTCTGATGACTCTACCTCCAAGGTAATAGTCTTGC 25797 Query 45309 CCGTCAGAGTCTTCACAAAGATTTGCATGTT 45339 ||||||| |||||||||||||| ||||| || Sbjct 25796 CCGTCAGGGTCTTCACAAAGATCTGCATTTT 25766 >seq8313 Length=21892 Score = 122 bits (134), Expect = 7e-23 Identities = 154/211 (73%), Gaps = 8/211 (4%) Strand=Plus/Plus Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCG----TCGTCCA 45188 ||| || ||| |||||||| ||||||||||| || | ||| ||| || || | Sbjct 1339 GTGGAGGGTGGATTCCTTCTGGATGTTGTAGTC----AGCTAGCGTTCGGCCATCCTCAA 1394 Query 45189 GTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAA 45248 | || ||||| ||||| ||||||||||| ||||| || || | || ||||||||| || Sbjct 1395 GCTGCTTTCCCGCGAAAATCAACCGCTGCTGGTCTGGTGGAATGCCTTCCTTGTCCTGAA 1454 Query 45249 TTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGC 45308 | || |||||| | | | ||||| ||| ||||| | |||||| ||||||| Sbjct 1455 TCTTAGCCTTAACATTGTCAATGGTGTCCGATGACTCTACCTCTAAGGTAATAGTCTTGC 1514 Query 45309 CCGTCAGAGTCTTCACAAAGATTTGCATGTT 45339 |||| || |||||||||||||| ||||| || Sbjct 1515 CCGTTAGGGTCTTCACAAAGATCTGCATTTT 1545 >seq11273 Length=79338 Score = 118 bits (130), Expect = 8e-22 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 || |||||||| | || |||| || || || ||||||||| ||||||||||| Sbjct 32418 CCTCCTCTCAAACGCAACACCAGATGGAGAGTTGACTCCTTCTGGATGTTGTAGTCTGCA 32359 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 || | |||| || |||||||| || || || ||||| ||||||||||| || || Sbjct 32358 AGAGTCCTCCCGTCCTCAAGTTGTTTACCAGCAAAGATCAAACGCTGTTGGTCTGGGGGA 32299 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | |||||||||||| ||| ||| || || | | | | || || ||| ||| Sbjct 32298 ATACCCTCCTTGTCTTGAATCTTTGCTTTCACATTGTCAATGGTATCTGAACTCTCAACC 32239 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 |||| ||||| ||||| || |||| |||||| ||||| ||||||||| Sbjct 32238 TCCAATGTAATTGTCTTCCCAGTCAAAGTCTTGACAAAAATTTGCATG 32191 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 || |||||||| | || |||| || || || ||||||||| ||||||||||| Sbjct 32646 CCTCCTCTCAAACGCAACACCAGATGGAGAGTTGACTCCTTCTGGATGTTGTAGTCTGCA 32587 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 || | | || || |||||||| || || || ||||| ||||||||||| || || Sbjct 32586 AGAGTCCTCCCATCCTCAAGTTGTTTACCAGCAAAGATCAAACGCTGTTGGTCTGGGGGA 32527 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | |||||||||||| ||| ||| || || | | | | || || ||| ||| Sbjct 32526 ATACCCTCCTTGTCTTGAATCTTTGCTTTCACATTGTCAATGGTATCTGAACTCTCAACC 32467 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 |||| || || ||||| || |||| ||||||||||||||| ||||| Sbjct 32466 TCCAATGTGATTGTCTTCCCAGTCAAAGTCTTCACAAAGATCTGCAT 32420 Score = 89.7 bits (98), Expect = 4e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 45109 GCCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTT 45168 ||||||||| | | | || | |||||| || || |||||||||||||| || Sbjct 32191 GCCACCTCTAAGGCGAAGAACAAGGTGCAGGGTTGATTCTTTCTGAATGTTGTAATCTGC 32132 Query 45169 CAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGG 45228 || | | || || ||||| ||||| || || ||||| | ||| ||||| ||||| Sbjct 32131 CAACGTCCTTCCATCCTCAAGTTGCTTTCCAGCAAAGATCAATCTCTGCTGGTCTGGAGG 32072 Query 45229 CACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCAC 45288 | |||||||||||| || ||| ||||| | | | || || ||| || Sbjct 32071 AATACCCTCCTTGTCTTGGATCTTTGCTTTAACATTGTCGATAGTATCTGAACTCTCAAC 32012 Query 45289 CTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 ||||| ||||| ||||| || |||| ||||| ||||| ||||||||| Sbjct 32011 CTCCAAAGTAATTGTCTTCCCTGTCAATGTCTTGACAAATATTTGCATG 31963 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192 ||| || ||| |||||| || |||||||| || ||| || | || || || || Sbjct 31711 GTGAAGGGTGGACTCCTTTTGGATGTTGTAATCAGCAAGTGTTCGGCCATCTTCAAGCTG 31652 Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252 ||| || || || |||| || ||| ||||| || || | ||| |||||||| |||||| Sbjct 31651 TTTCCCAGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATACCTTCCTTGTCTTGAATTTT 31592 Query 45253 TTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGT 45312 || || | | | |||| | ||| ||||| | || || ||||| || || Sbjct 31591 AGCTTTGACATTATCAATGGTGTCTGAGCTCTCGACCTCAAGAGTTATAGTCTTTCCGGT 31532 Query 45313 CAGAGTCTTCACAAAGATTTGCAT 45336 |||||| || |||||||||||||| Sbjct 31531 CAGAGTTTTAACAAAGATTTGCAT 31508 >seq2718 Length=65933 Score = 102 bits (112), Expect = 6e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 ||||| || || ||| ||||||||| ||||||||||| || ||| | || ||| Sbjct 44498 ACCAAATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCTAGGGTGCGGCCATCTTCC 44439 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 | || ||||| || || ||||||| ||| ||||| || || | || ||||| ||| Sbjct 44438 AACTGCTTTCCTGCAAAGATCAACCTCTGCTGGTCTGGGGGAATGCCTTCCTTATCCTGG 44379 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | |||| | || ||||| | |||||||||||| Sbjct 44378 ATCTTAGCCTTGACGTTGTCAATGGTGTCTGAGCTTTCGACCTCAAGGGTAATCGTCTTA 44319 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 ||||| ||||||||||| ||||| ||||| Sbjct 44318 CCCGTAAGAGTCTTCACGAAGATCTGCAT 44290 Score = 98.7 bits (108), Expect = 8e-16 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192 |||||| || |||||||| || |||||||| || ||| | || || || || Sbjct 45405 GTGCAGGGTAGATTCCTTCTGGATATTGTAGTCAGCAAGGGTGCGGCCATCCTCAAGCTG 45346 Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252 || || ||||| ||||||| ||| ||||| || || | |||||||||||| ||| || Sbjct 45345 CTTACCAGCGAAGATCAACCTCTGCTGGTCTGGTGGGATCCCCTCCTTGTCCTGAATCTT 45286 Query 45253 TTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGT 45312 || || | | | |||| || ||||||||||| || || ||||| || || Sbjct 45285 AGCTTTCACATTGTCGATGGTGTCAGAACTCTCCACCTCCAAAGTGATGGTCTTCCCGGT 45226 Query 45313 CAGAGTCTTCACAAAGATTTGCAT 45336 || |||||||||||||| ||||| Sbjct 45225 CAAGGTCTTCACAAAGATCTGCAT 45202 Score = 95.1 bits (104), Expect = 1e-14 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 45145 CTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAA 45204 ||||||||| |||||||||||| || ||| | || || || || || || ||||| Sbjct 44937 CTCCTTCTGGATGTTGTAGTCGGCAAGGGTGCGGCCATCCTCGAGCTGCTTACCAGCGAA 44878 Query 45205 TATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGC 45264 ||||||| ||| ||||| || || | |||||||||||| || || |||||| Sbjct 44877 GATCAACCTCTGCTGGTCTGGGGGAATTCCCTCCTTGTCCTGGATCTTAGCCTTAACATT 44818 Query 45265 CGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCAC 45324 | | | |||| | |||||||||| || || ||||| || || || ||||| || Sbjct 44817 ATCAATGGTGTCGGAGCTTTCCACCTCCAAAGTGATAGTCTTTCCGGTGAGGGTCTTAAC 44758 Query 45325 AAAGATTTGCAT 45336 ||| || ||||| Sbjct 44757 AAAAATCTGCAT 44746 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 || || |||| || | ||||||||||| || |||||| || ||||| ||||| | Sbjct 45200 CCTCCCCTCAGCCTAAGCACCAAGTGCAGGGTCGACTCCTTTTGGATGTTATAGTCCGCC 45141 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 | ||| | || || || || || || || || ||||||| ||| ||||| || || Sbjct 45140 AAAGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAAATCAACCTCTGCTGGTCTGGGGGG 45081 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | |||||||||||| || || ||| || | | | |||| | ||| ||| Sbjct 45080 ATACCCTCCTTGTCTTGGATCTTGGCCTTGACATTGTCAATGGTGTCGGAGCTCTCAACC 45021 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 |||| ||| || || || || || |||||||| |||||||| ||||| Sbjct 45020 TCCAGGGTGATGGTTTTCCCGGTAAGAGTCTTAACAAAGATCTGCAT 44974 Score = 89.7 bits (98), Expect = 4e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 45145 CTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAA 45204 ||||||||| ||||||||||| ||| ||| | || || || || ||||| ||||| Sbjct 44709 CTCCTTCTGGATGTTGTAGTCAGCCAGAGTGCGGCCATCCTCAAGCTGCTTTCCAGCGAA 44650 Query 45205 TATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGC 45264 ||||||| ||| ||||| || || | || ||||| ||| || || ||| || Sbjct 44649 GATCAACCTCTGCTGGTCTGGGGGGATCCCTTCCTTATCCTGGATCTTAGCCTTCACGTT 44590 Query 45265 CGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCAC 45324 | | | |||| | |||||||||| || || ||||| || || |||||||| || Sbjct 44589 GTCAATGGTGTCGGAGCTTTCCACCTCCAAAGTGATGGTCTTTCCGGTAAGAGTCTTAAC 44530 Query 45325 AAAGATTTGCAT 45336 ||||| ||||| Sbjct 44529 GAAGATCTGCAT 44518 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 ||||| || || || ||||||||| |||||||| || || || |||| ||| Sbjct 44270 ACCAAATGGAGGGTAGACTCCTTCTGGATGTTGTAATCAGCTAGAGTACGTCCGTCCTCC 44211 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 | || ||||||||||| |||| || || || || || || | || ||||||||| Sbjct 44210 AACTGCTTTCCGGCGAAGATCAGCCTTTGCTGATCCGGGGGAATCCCTTCCTTGTCCTGG 44151 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || |||||| | | | || || |||||||| | ||| || ||||| Sbjct 44150 ATCTTAGCCTTAACGTTGTCGATTGTATCAGAACTTTCCACCTCTAGGGTGATAGTCTTT 44091 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || || ||||| ||||||||||| ||||| Sbjct 44090 CCGGTGAGAGTTTTCACAAAGATCTGCAT 44062 >seq30 Length=32432 Score = 87.8 bits (96), Expect = 1e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 45146 TCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAAT 45205 ||||||||||| ||||| ||| | | | | || |||| || || || || || Sbjct 404 TCCTTCTGAATATTGTAATCGGCTAATGTCCTTCCATCTTCCAACTGCTTGCCAGCAAAA 345 Query 45206 ATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCC 45265 ||||||| || ||||| || || | |||||| |||||| ||| || ||| || Sbjct 344 ATCAACCTTTGCTGGTCTGGTGGGATACCCTCTTTGTCCTGAATCTTGGCCTTTACGTTG 285 Query 45266 GCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACA 45325 | | | |||| | |||||||| | |||||| |||||||| |||| |||||||| Sbjct 284 TCAATGGTGTCGGAGCTTTCCACCTCAAGGGTAATAGTCTTGCCAGTCAAGGTCTTCACG 225 Query 45326 AAGATTTGCAT 45336 ||||||||||| Sbjct 224 AAGATTTGCAT 214 >seq29 Length=28306 Score = 84.2 bits (92), Expect = 2e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||||||| || || |||||||||||||||||| || || || |||| || Sbjct 27922 ACCAAGTGGAGAGTTGACTCCTTCTGAATGTTGTAATCAGCTAGAGTACGGCCGTCTTCA 27863 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || ||||| || || |||| || ||| ||||| || || | || ||||||||| Sbjct 27862 AGCTGCTTTCCTGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCTTCCTTGTCCTGG 27803 Query 45248 ATTTTTTGCTTAACCGCCG-CCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTT 45306 | | || |||| | || | | | | |||| | |||||||| | ||| || ||||| Sbjct 27802 A-TCTTGGCTTTAACGTTGTCAATGGTGTCTGAGCTTTCCACCTCAAGGGTGATAGTCTT 27744 Query 45307 GCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || || || || || ||||| || ||||| Sbjct 27743 TCCAGTGAGGGTTTTAACAAATATCTGCAT 27714 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 394850850868474