Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20arcanum_20[genbank_20GCA_5F000612985.1_202014-03-22] 46,594 sequences; 665,186,956 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq4177 109 5e-19 seq15927 96.9 3e-15 >seq4177 Length=96264 Score = 109 bits (120), Expect = 5e-19 Identities = 376/582 (65%), Gaps = 6/582 (1%) Strand=Plus/Minus Query 11627 AAACACGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTT 11686 ||||||||||||||||| || |||||||||||||| |||| ||||| || || ||| Sbjct 66964 AAACACGCAAAATCACAGTGCAAACCTTCGTCTCTTGAAATTAACTCATTTGAGAAGGTT 66905 Query 11687 AATCCGGGCATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAAAG 11746 ||||| ||||| || || |||||||| | ||||||||| | | || || ||| Sbjct 66904 AATCCAGGCATTAACCCCCGTTTTTTCAACCAAAATATCGAACAGAAGCTTCCGCTGAAG 66845 Query 11747 AATATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCTCCATATACCTTGTTG--CTAG 11804 || || || || ||| ||||| || || | | |||| | || | | | Sbjct 66844 AAAATCCCTTCAACACAAGCAAAAGCCACCAAAC--GCTCCGCGAAAGTTTCAGACCCAT 66787 Query 11805 ATATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTATAGCGT 11864 ||||| |||||| | || ||||||| || || ||||| || || || Sbjct 66786 CGATCCAACGAAGGGCCCATTTCGCCTTCTTTTCAACACAAGGGATTGTCTCAATTGCAC 66727 Query 11865 TAAATAAATGCATTTTTTCTATATTATCTCTTACATATGTATCTATTAATAAACTATACA 11924 || || | | ||||| | ||| | | || | || | | ||||| |||| Sbjct 66726 GGAACAATTTGCTCTTTTCGTCAGAATCCTTGATGTACGACTCCAACAGCAAACTGTACA 66667 Query 11925 TTTCTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTCTGAAC 11984 | || ||||| ||||| || || || ||||| || ||||||||| || ||||| | | Sbjct 66666 TCTCGGAATGGATATTCTCAATGGCGATTTGGAACCCATAGAAAGCACGAGCCTCGGCAA 66607 Query 11985 ACTGTACATC-CACATAAAATCTTTCCGCTAAATTCTCATTTACAATACCATCACTAGAT 12043 ||| ||||| ||| || ||| | || | ||||| || || || || | Sbjct 66606 CCTGGACATCTTTCAT-GAACCTTCCAGCGAGGTTCTCTAAAACTATGCCGTCTGAGGCG 66548 Query 12044 GCAAAAAATGCTAGTATATGTTTTATAAAGTATTTTTCGTCTTTAGTTAATTTATCCCAA 12103 |||||||| || || | ||| | || || | |||| | |||| || ||||| Sbjct 66547 GCAAAAAAGGCAAGAACATGAGTGATGAAATGCCTTTCACCGGATGTTAGGTTTTCCCAG 66488 Query 12104 TCATCTAAATCTTTTGATAAATCTACTTCTTCAACGGTCCAAAAACTTGCCACTGATTGT 12163 | | ||| | || | ||| |||||||| || ||||| ||| ||||| | || Sbjct 66487 TGACGAGTATCGGTGGAGAGATCGACTTCTTCTACCGTCCAGAAAGATGCCATGGCTTTC 66428 Query 12164 TTATACATTTTCCAGATATCATGATACTTAATAGGGAAAATA 12205 || ||||| | ||| || | |||||| ||| ||||| ||| Sbjct 66427 TTGTACATCTCCCAAATCTGTGGATACTGAATTGGGAACATA 66386 >seq15927 Length=13211 Score = 96.9 bits (106), Expect = 3e-15 Identities = 166/238 (70%), Gaps = 6/238 (3%) Strand=Plus/Plus Query 38400 TTGAGGCAATGGAGTTCCGGCGTTAAATAATGTAGGAGATGCATGTATGAACCATTTTTC 38459 ||||||| |||||| || || ||||||| ||| ||||||||||| ||||||| || Sbjct 4119 TTGAGGCCTTGGAGTGCCAGCATTAAATAGTGTTGGAGATGCATGAGTGAACCAGCGTTG 4178 Query 38460 CGACAAATAATTATATGTTTCTATTACATCATCTATATCACCGCCGTGAATACCTAGAGA 38519 |||| ||| |||||| || ||| || ||||| | ||| || || | ||| Sbjct 4179 AGACATCAAATGATATGTCATGATGACAGATTCAATATCCTCTTTGTGGATTCCAACAGA 4238 Query 38520 TACCCTCATTAGCATATGTTGTGGTCTTTCTATTATTTT---ATTATTCTGTTTAAGTAG 38576 ||| ||||| |||||||||||||| ||||| | || || | | || ||||| || Sbjct 4239 TACTCTCATCAGCATATGTTGTGGCCTTTCCACAATCTTTCCCTGAATC--TTTAA-AAG 4295 Query 38577 ATACGATTTTTCTAATGTTTTTATTCCAAAATAACTATATGAATAATCTCTATCGTAT 38634 || || |||| | ||||| | ||||| ||| ||| | | ||||| |||||| Sbjct 4296 GTAAGACCTTTCAAGGGTTTTGAAACCAAAGTAATCATAGTCAAAGTCTCTGTCGTAT 4353 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468251919443360