Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20arcanum_20[genbank_20GCA_5F000612985.1_202014-03-22] 46,594 sequences; 665,186,956 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq11273 107 2e-18 seq30 89.7 5e-13 seq8951 82.4 8e-11 >seq11273 Length=79338 Score = 107 bits (118), Expect = 2e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || |||| ||| | || | |||| |||||||||||||| ||||| ||||| Sbjct 31506 CCACCACGTAGACGGAGGACAAGATGAAGGGTAGACTCTTTTTGGATGTTGTAATCAGCA 31447 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | ||| | ||||| |||||||| |||||| ||||||| | |||||||| ||||| Sbjct 31446 AGTGTTCGGCCATCTTCAAGCTGTTTCCCAGCAAAGATCAGTCTCTGCTGATCTGGAGGA 31387 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 |||||||| ||||| ||| | || | ||| | | || | ||||| | ||| || Sbjct 31386 ATGCCTTCCTTGTC-TTGAATCTTAGCTTTGACATTATCAATGGTGTCAGAACTCTCGAC 31328 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||| || | ||||| ||||| | || || || ||||| ||||| Sbjct 31327 CTCAAGAGTGATGGTCTTTCCGGTGAGTGTCTTAACAAATATCTGCAT 31280 >seq30 Length=32432 Score = 89.7 bits (98), Expect = 5e-13 Identities = 149/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || ||||| | ||||| || ||||||| || ||||| || || ||||| ||||| Sbjct 212 CCACCTCGGAGACGCAGGACCAAGTGAAGGGTTGACTCCTTCTGGATGTTGTAATCAGCA 153 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || | ||| || || || || || ||| |||||| | |||||| || ||||| Sbjct 152 AGGGTACGGCCGTCCTCAAGTTGCTTTCCGGCAAAGATCAACCTTTGCTGGTCTGGAGGA 93 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGC-TGTTCCACTGTGTCGGTGGGCTCCAC 139716 || ||||||||||| ||| |||| | ||| | | || | ||||| | ||||| Sbjct 92 ATACCTTCTTTGTC-CTGAATTTTGGCCTTAACATTGTCAATGGTGTCAGAACTTTCCAC 34 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTT 139749 ||||| ||| | |||||||| ||||| || || Sbjct 33 CTCAAGGGTGATTGTCTTGCCAGTCAAGGTCTT 1 >seq8951 Length=56096 Score = 82.4 bits (90), Expect = 8e-11 Identities = 90/120 (75%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 139552 CAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTC 139611 || ||| | ||||| || || ||||| |||||||| ||||| || || || || Sbjct 33906 CAGAACAAGGTGAAGAGTTGATTCTTTCTGAATGTTGTAATCAGCCAGGGTTCTACCATC 33847 Query 139612 TTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTC 139671 ||| | ||||| |||||| | ||||| | |||||||| ||||||||||||||||| || Sbjct 33846 TTCCAATTGTTTTCCAGCAAAAATCAGTCTCTGCTGATCCGGAGGTATGCCTTCTTTATC 33787 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495775079924800