Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20arcanum_20[genbank_20GCA_5F000612985.1_202014-03-22] 46,594 sequences; 665,186,956 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq2718 95.1 9e-15 seq1518 86.0 5e-12 >seq2718 Length=65933 Score = 95.1 bits (104), Expect = 9e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || ||||| || | | ||||||||||| || |||||| || | |||||||| | Sbjct 44288 CCACCACGTAGACGGAGCACCAAATGGAGGGTAGACTCCTTCTGGATGTTGTAATCAGCT 44229 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | |||||| |||| ||||| || || ||||| || |||| | || ||||| | || Sbjct 44228 AGAGTACGTCCGTCCTCCAACTGCTTTCCGGCGAAGATCAGCCTTTGCTGATCCGGGGGA 44169 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | ||||| || || |||| | || || || | | ||| || | || || Sbjct 44168 ATCCCTTCCTTGTCCTGGATCTTAGCCTTAACGTTGTCGATTGTATCAGAACTTTCCACC 44109 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 |||| || ||||| |||||||| |||||||||||||| || ||||| Sbjct 44108 TCTAGGGTGATAGTCTTTCCGGTGAGAGTTTTCACAAAGATCTGCAT 44062 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 ||||| | ||| || | |||||| || | || ||||||||| | || || || | | Sbjct 45200 CCTCCCCTCAGCCTAAGCACCAAGTGCAGGGTCGACTCCTTTTGGATGTTATAGTCCGCC 45141 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 || || || | || || | || ||||| ||||||||||| | ||| || || | || Sbjct 45140 AAAGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAAATCAACCTCTGCTGGTCTGGGGGG 45081 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGC-CTCGAC 43061 | ||| || || || |||| | ||||| || ||| |||||| ||| ||| || Sbjct 45080 ATACCCTCCTTGTCTTGGATCTTGGCCTTGACATTGTCAATGGTGTCG-GAGCTCTCAAC 45022 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || || ||||| ||||| ||||| || ||||| || ||||| Sbjct 45021 CTCCAGGGTGATGGTTTTCCCGGTAAGAGTCTTAACAAAGATCTGCAT 44974 >seq1518 Length=20725 Score = 86.0 bits (94), Expect = 5e-12 Identities = 128/182 (70%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 42931 TTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGT 42990 |||||||| | | |||||| | || || | || || ||||| || ||||||||||| Sbjct 13833 TTGTAATCAGCTAGAGTACGTCCATCTTCGAGCTGCTTTCCGGCGAAGATCAATCGCTGC 13774 Query 42991 TGATCGGCCGGCACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCG 43050 || || | || | |||||| || || ||| ||||||| || ||| |||||| Sbjct 13773 TGGTCTGGTGGAATACCTTCCTTGTCTTGAATCTTAGCTTTGACATTGTCAATAGTGTCG 13714 Query 43051 CCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATT 43110 | | || || || | ||| || || || || || ||||||||||| || || |||||| Sbjct 13713 CTCGATTCAACTTCAAGCGTGATCGTCTTCCCCGTAAGAGTTTTCACGAAGATCTGCATT 13654 Query 43111 TT 43112 || Sbjct 13653 TT 13652 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381153033790452