Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20arcanum_20[genbank_20GCA_5F000612985.1_202014-03-22] 46,594 sequences; 665,186,956 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq4177 192 8e-44 seq18349 96.9 5e-15 >seq4177 Length=96264 Score = 192 bits (212), Expect = 8e-44 Identities = 590/904 (65%), Gaps = 10/904 (1%) Strand=Plus/Minus Query 41759 GACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCT 41818 ||||||||| ||| || || || || || | || || || ||||||||||| ||| Sbjct 67267 GACATAACTGAGGCTTTCTGATACTCCCCAACTCTCTTCTCAAAGAAATTAGTCTTCCCT 67208 Query 41819 TCCAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAAT 41878 | || || ||||| ||||||| ||||| | |||| || || || | | | Sbjct 67207 TGTAAACTAATCAGCTCCATCCAATCAAATGGATTCTGAGCATTGTACATCTTGTCATAA 67148 Query 41879 CCCAATTCAGAAATCAATCTATCTGCGATGAATTCTATATATGTTTTCATCATTTCACAA 41938 ||||| || | |||||| || || | || ||||| ||| | |||||| || | | Sbjct 67147 CCCAAAGCATCCAACAATCTGTCAGCTACAAACTCTATGTATTTACTCATCAAATCTCCA 67088 Query 41939 TTCATTCCTATAAGTTTAACTGGAAGAGC--CACAGTAAGAAATTCTTGTTCAATAGAGA 41996 |||||||| | || | |||||||| |||| | ||| | | | ||| || | Sbjct 67087 TTCATTCCCACCAGAGCACAAGGAAGAGCATCACAC-ACGAACTCCCT-TTCTATCTCCA 67030 Query 41997 CCGCGTCTGTTATAATAGATCTTACTGTTTCTTCACTCGG-TGGATAC--AATAAATGTT 42053 | || |||| | ||| || ||| || ||| | | | | | || ||| | Sbjct 67029 CAGCATCTGCAACAATTCCCCTGACTCGCTCCTCAGTTAGCTTCGTCCTTAACAAAC-TG 66971 Query 42054 TAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGG 42113 |||| |||||| || ||||| ||||||| ||| || ||||| |||||| || || | Sbjct 66970 TAAAG--CAAACACGCAAAATCACAGTGCAAACCTTCGTCTCTTGAAATTAACTCATTTG 66913 Query 42114 AAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATC 42173 | || || | ||| ||||||| || || ||||| | ||||||||| || || || Sbjct 66912 AGAAGGTTAATCCAGGCATTAACCCCCGTTTTTTCAACCAAAATATCGAACAGAAGCTTC 66853 Query 42174 CAGAAAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCAC 42233 | ||||| || ||||| || ||||| || | | | ||| | || || Sbjct 66852 CGCTGAAGAAAATCCCTTCAACACAAGCAAAAGCCACCAAACGCTCCGCGAAAGTTTCAG 66793 Query 42234 TGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTA 42293 ||| ||||| | ||||| | |||||||||| |||||||| || || || | Sbjct 66792 ACCCATCGATCCAACGAAGGGCCCATTTCGCCTTCTTTTCAACACAAGGGATTGTCTCAA 66733 Query 42294 TGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGAC 42353 | ||| || | | | | ||||| | | ||| || | || | || | || | || Sbjct 66732 TTGCACGGAACAATTTGCTCTTTTCGTCAGAATCCTTGATGTACGACTCCAACAGCAAAC 66673 Query 42354 TATACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCT 42413 | ||||| || ||||| || || |||||||| || || || || |||||| | |||| Sbjct 66672 TGTACATCTCGGAATGGATATTCTCAATGGCGATTTGGAACCCATAGAAAGCACGAGCCT 66613 Query 42414 CGGTAACCTGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCAC 42473 ||| |||||| || ||| | || | | |||| | || || ||||| ||||| Sbjct 66612 CGGCAACCTGGACATCTTTCATGAACCTTCCAGCGAGGTTCTCTAAAACTATGCCGTCTG 66553 Query 42474 TGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAATTTAT 42533 ||| |||||||| || | ||||| | || |||| |||| | | ||||| || | Sbjct 66552 AGGCGGCAAAAAAGGCAAGAACATGAGTGATGAAATGCCTTTCACCGGATGTTAGGTTTT 66493 Query 42534 TCCAATCATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTG 42593 ||| | | |||| | || | ||| ||||||||||||||||| || ||||| | Sbjct 66492 CCCAGTGACGAGTATCGGTGGAGAGATCGACTTCTTCTACCGTCCAGAAAGATGCCATGG 66433 Query 42594 CCTTTTTATACATATTCCAGATATCATGATATTGAATTGGGAAAATAACAAATCTATTTG 42653 | || || ||||| | ||| || | |||| ||||||||||| ||| |||| || || Sbjct 66432 CTTTCTTGTACATCTCCCAAATCTGTGGATACTGAATTGGGAACATACAGAATCGATCTG 66373 Query 42654 GATT 42657 | || Sbjct 66372 GGTT 66369 >seq18349 Length=14259 Score = 96.9 bits (106), Expect = 5e-15 Identities = 140/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 72417 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATT 72476 |||||| |||||||| | ||||||||||| || || |||||| | | ||||| | || Sbjct 4964 AGTTCCAGCATTAAAAAGAGTAGGAGAAGCATGAGTGAACCATCTCTGAGACATCAAATG 5023 Query 72477 GTACGTCTCAATAGCTGATTCTATATCCCATTGATGTATTCCTACCGCGACACGCATTAA 72536 || |||| || || ||||| ||||| | |||||| ||||| | ||| | ||| | Sbjct 5024 ATAAGTCTTGATGGCAGATTCAATATCATTCTTATGTATCCCTACAGAGACTCTCATCAG 5083 Query 72537 CATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCAA 72596 ||| || || || ||||| || | || || || || || | ||| ||| |||| Sbjct 5084 CATGTGTTGTGGCCTTTCTACAACTTTCCCATCAATCTTTAAGAGGTAAGATCGCTCCAG 5143 Query 72597 AGTTTTAAAACCAAAATA 72614 ||||| |||||||| || Sbjct 5144 GGTTTTGAAACCAAAGTA 5161 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 670748311751440