Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20arcanum_20[genbank_20GCA_5F000612985.1_202014-03-22] 46,594 sequences; 665,186,956 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq5748 98.7 6e-16 seq1518 82.4 5e-11 >seq5748 Length=24579 Score = 98.7 bits (108), Expect = 6e-16 Identities = 153/216 (71%), Gaps = 6/216 (3%) Strand=Plus/Plus Query 33157 CAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTC 33216 ||| || | ||| | ||| ||||| ||||| ||||||||||||| ||| | | || || Sbjct 10208 CAAGACAAGATGAATTGTAGACTCCTTTTGAATATTGTAATCAG-CAAGTGTA--TGATC 10264 Query 33217 ATCC---AATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTT 33273 |||| ||||| ||||||| ||||| ||| | ||| || || | ||| || |||||||| Sbjct 10265 ATCCTTAAATTGTTTTCCACCAAATACTAATCTTTGTTGATCTGAGGGAATTCCTTCTTT 10324 Query 33274 TTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTAT 33333 || |||| ||| || | | ||| |||| | | || |||||||| || Sbjct 10325 GTCTTCAATCTTTGCTTTAACATTGTTAATGGTGTTGGAACTCTTCACATCCAGAGTAAT 10384 Query 33334 CGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || ||||| | |||||||| || || |||||||| Sbjct 10385 GGTCTTTCCAATGAGAGTTTTAACAAAGATTTGCAT 10420 >seq1518 Length=20725 Score = 82.4 bits (90), Expect = 5e-11 Identities = 134/193 (69%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 33180 CTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATA 33239 |||| || || |||||||||| | | | || || || | |||||||| || | Sbjct 13844 CTTTCTGAATGTTGTAATCAGCTAGAGTACGTCCATCTTCGAGCTGCTTTCCGGCGAAGA 13785 Query 33240 TTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCTAATCGCCTGTTTTACTGTTT 33299 | || || |||||||| | || || ||||| || || |||| ||| || | | Sbjct 13784 TCAATCGCTGCTGGTCTGGTGGAATACCTTCCTTGTCTTGAATCTTAGCTTTGACATTGT 13725 Query 33300 GAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGA 33359 ||| |||||| | | || ||| || || || ||||| || |||||||||||||| |||| Sbjct 13724 CAATAGTGTCGCTCGATTCAACTTCAAGCGTGATCGTCTTCCCCGTAAGAGTTTTCACGA 13665 Query 33360 AAATTTGCATGTT 33372 | || ||||| || Sbjct 13664 AGATCTGCATTTT 13652 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318596577557412