Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20arcanum_20[genbank_20GCA_5F000612985.1_202014-03-22] 46,594 sequences; 665,186,956 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq11273 95.1 9e-15 >seq11273 Length=79338 Score = 95.1 bits (104), Expect = 9e-15 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 43895 CCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTT 43954 ||||||||||| | ||||||| ||| || || ||| || || || || || || | Sbjct 32418 CCTCCTCTCAAACGCAACACCAGATGGAGAGTTGACTCCTTCTGGATGTTGTAGTC-TGC 32360 Query 43955 AATTG-ACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 || | | | | || || | |||||| || ||||| ||||| || || ||||| | || Sbjct 32359 AAGAGTCCTCCCGTCCTCAAGTTGTTTACCAGCAAAGATCAAACGCTGTTGGTCTGGGGG 32300 Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073 | ||| || || ||| ||| ||| ||| || | ||| ||||||| ||| || Sbjct 32299 AATACCCTCCTTGTCTTGAATCTTTGCTTTCACATTGTCAATGGTATCTGAACTCTCAAC 32240 Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCATG 44122 || | |||||||| || || || |||||||| ||||| ||||||||| Sbjct 32239 CTCCAATGTAATTGTCTTCCCAGTCAAAGTCTTGACAAAAATTTGCATG 32191 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 43895 CCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTT 43954 ||||||||||| | ||||||| ||| || || ||| || || || || || || | Sbjct 32646 CCTCCTCTCAAACGCAACACCAGATGGAGAGTTGACTCCTTCTGGATGTTGTAGTC-TGC 32588 Query 43955 AATTGACG-CTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 || | | | |||| || | |||||| || ||||| ||||| || || ||||| | || Sbjct 32587 AAGAGTCCTCCCATCCTCAAGTTGTTTACCAGCAAAGATCAAACGCTGTTGGTCTGGGGG 32528 Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073 | ||| || || ||| ||| ||| ||| || | ||| ||||||| ||| || Sbjct 32527 AATACCCTCCTTGTCTTGAATCTTTGCTTTCACATTGTCAATGGTATCTGAACTCTCAAC 32468 Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || | || ||||| || || || |||||||||||||| || ||||| Sbjct 32467 CTCCAATGTGATTGTCTTCCCAGTCAAAGTCTTCACAAAGATCTGCAT 32420 Score = 87.8 bits (96), Expect = 1e-12 Identities = 114/158 (72%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 43965 CATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTT 44024 |||| || | ||| ||||| ||||| ||||| | |||||||| |||| | ||| || | Sbjct 32120 CATCCTCAAGTTGCTTTCCAGCAAAGATCAATCTCTGCTGGTCTGGAGGAATACCCTCCT 32061 Query 44025 TATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAA 44084 | ||| || ||| ||| || | | | |||||||| ||| || || | |||| Sbjct 32060 TGTCTTGGATCTTTGCTTTAACATTGTCGATAGTATCTGAACTCTCAACCTCCAAAGTAA 32001 Query 44085 TTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCATG 44122 |||| || || || || ||||| ||||||||||||||| Sbjct 32000 TTGTCTTCCCTGTCAATGTCTTGACAAATATTTGCATG 31963 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354576134439912