Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20arcanum_20[genbank_20GCA_5F000612985.1_202014-03-22] 46,594 sequences; 665,186,956 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq4177 116 3e-21 >seq4177 Length=96264 Score = 116 bits (128), Expect = 3e-21 Identities = 555/870 (64%), Gaps = 23/870 (3%) Strand=Plus/Minus Query 12845 GACATAACAGACATTTTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCT 12904 |||||||| || ||| ||||| || | |||||| || ||||| || || || || ||| Sbjct 67267 GACATAACTGAGGCTTTCTGATACTCCCCAACTCTCTTCTCAAAGAAATTAGTCTTCCCT 67208 Query 12905 TCTAACGAAATATTTTCCATAAAATCGAAAGGATTTTTCGAACAATAGTATTTTTT---A 12961 | ||| ||| ||||| |||| || ||||| | || || | ||| | || | Sbjct 67207 TGTAAACTAATCAGCTCCATCCAATCAAATGGATTCT--GAGCATT-GTACATCTTGTCA 67151 Query 12962 CACCCTAATTCTAGTAACAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCA 13021 | || || | |||||||||||||| |||||||||||||| | |||| ||||| Sbjct 67150 TAACCCAAAGCATCCAACAATCTGTCAGCTACAAACTCTATGTATTTACTCATCAAATCT 67091 Query 13022 CAGTTCATTCCTATTAATTTTACAGGCATAGCTTCTGTTAAAAAGtttttttCTATATCA 13081 | |||||||| | | ||| | ||| || | || | ||||||| || Sbjct 67090 CCATTCATTCCCACCAGAGCACAAGGAAGAGCATCACACACGAACTCCCTTTCTATCTCC 67031 Query 13082 ACTGCTTCGATAACTATGTCTCTTATTACGTTCTCTAATGGAGGAT-----TTGATAGAT 13136 || || || ||| || | || | | || || || | || | || | | | Sbjct 67030 ACAGCATCTGCAACAATTCCCCTGACT-CGCTC-CTCAGTTAGCTTCGTCCTTAACAAA- 66974 Query 13137 GCTTAAACATCATACATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGT 13196 || || | || ||| ||||||||||||||||| ||||| ||||| |||| ||| | Sbjct 66973 -CTGTAA-AGCAAACACGCAAAATCACAGTGCAAACCTTCGTCTCTTGAAATTAACTCAT 66916 Query 13197 TTGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACG 13256 |||| || |||| || ||||| | ||| |||||||| | ||||||||| | | || | | Sbjct 66915 TTGAGAAGGTTAATCCAGGCATTAACCCCCGTTTTTTCAACCAAAATATCG-AACAGAAG 66857 Query 13257 AACCCG-aaaaaaaTATTCCTTCAACTGCTGCAAACGCTATCAACCTTTCACCATACGTA 13315 ||| || || || |||||||| ||||| || | ||| | || | | || Sbjct 66856 CTTCCGCTGAAGAAAATCCCTTCAACACAAGCAAAAGCCACCAAACGCTCCGCGAAAGT- 66798 Query 13316 CTATTTTTACTC-TCTATCCACTTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCAT 13374 || || | || ||||| |||||| || || || | || ||| || || Sbjct 66797 ---TTCAGACCCATCGATCCAACGAAGGGCCCATTTCGCCTTCTTTTCAACACAAGGGAT 66741 Query 13375 ATTTTCTATTGCGTTAAATAAATAAtttttttCCTTACTGTCTAAAATATAAGTATCTAT 13434 | || ||||| || || | | ||||| | | || || || | || | Sbjct 66740 TGTCTCAATTGCACGGAACAATTTGCTCTTTTCGTCAGAATCCTTGATGTACGACTCCAA 66681 Query 13435 CAATAAGCTATACATTTCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACA 13494 || || || ||||| || ||||| ||||| || || || |||||||| ||||| ||| Sbjct 66680 CAGCAAACTGTACATCTCGGAATGGATATTCTCAATGGCGATTTGGAACCCATAGAAAGC 66621 Query 13495 TCTAGCCTCTGATACCTGAACTTCGGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTAT 13554 | |||||| | ||||| || || || ||| | || | ||| || |||||| Sbjct 66620 ACGAGCCTCGGCAACCTGGACATCTTTCATGAACCTTCCAGCGAGGTTCTCTAAAACTAT 66561 Query 13555 CCCGTCACTAGCAGCaaaaaaaGCAAGTATGTGCTTAATAAAttttttttCGTTTTCTGA 13614 ||||| || |||||||| ||||| | || | || || | |||| || Sbjct 66560 GCCGTCTGAGGCGGCAAAAAAGGCAAGAACATGAGTGATGAAATGCCTTTCACCGGATGT 66501 Query 13615 CAACTTTAACCAATCTGGAAAATCTTTTGATAAATCTACCTCCTCAACGGTCCAAAAAGA 13674 | ||| ||| | || ||| | || | ||| || || || || ||||| ||||| Sbjct 66500 TAGGTTTTCCCAGTGACGAGTATCGGTGGAGAGATCGACTTCTTCTACCGTCCAGAAAGA 66441 Query 13675 AGCAACAGCCTTCTTATACATCATCCATAT 13704 || | || ||||| |||||| ||| || Sbjct 66440 TGCCATGGCTTTCTTGTACATCTCCCAAAT 66411 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430737660448788