Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20arcanum_20[genbank_20GCA_5F000612985.1_202014-03-22] 46,594 sequences; 665,186,956 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq24578 145 1e-30 seq17364 140 5e-29 seq2494 131 3e-26 seq17365 125 1e-24 seq2493 125 1e-24 seq7163 123 4e-24 seq34877 122 1e-23 seq32268 114 2e-21 seq37838 111 2e-20 seq2263 107 3e-19 seq20684 84.2 3e-12 >seq24578 Length=29270 Score = 145 bits (160), Expect = 1e-30 Identities = 179/242 (74%), Gaps = 2/242 (1%) Strand=Plus/Plus Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517 |||||||||| ||||| || |||||||||||||| ||| | || |||||| | ||||| | Sbjct 12654 GAGATAACATTCAAGGTATTACCAAGCCAGCTATTCGTAGGCTTGCTCGTAGAGGTGGGG 12713 Query 16518 TCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCA 16577 | |||||| | ||||||||| | ||||| || | ||||| ||| | |||||||| || Sbjct 12714 TGAAGCGTATTTCTGGATTGATTTATGAGGAAACTCGTGGGGTTCTTAAGATCTTTCTTG 12773 Query 16578 AGACCGTTATCCATGATGCT-TTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACC 16636 | | || || | ||||||| || || ||||| || || |||| | |||||||| || Sbjct 12774 AAAATGTGATTCGTGATGCTGTTACA-TATACTGAACATGCTAGGAGAAAGACTGTGACG 12832 Query 16637 TCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGT 16696 | |||||| | || ||||| | || | ||||| | | |||| || |||||| || Sbjct 12833 GCAATGGATGTTGTTTATGCTCTTAAGAGGCAAGGAAGGACCCTTTACGGATTTGGAGGT 12892 Query 16697 TA 16698 || Sbjct 12893 TA 12894 >seq17364 Length=5654 Score = 140 bits (154), Expect = 5e-29 Identities = 149/197 (76%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 16460 GATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTC 16519 || ||||||||||| ||||| ||||||||||| || | || |||||| | ||||| || Sbjct 2994 GACAACATCCAAGGTATCACTAAGCCAGCTATTCGCAGGCTTGCTCGTAGGGGTGGTGTG 3053 Query 16520 AAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAG 16579 |||||| ||||||| | ||||||| |||| |||| || ||||||||||| | || Sbjct 3054 AAGCGTATCTCTGGTCTCATCTATGAGGAGACCCGTGGAGTGTTGAAGATCTTTTTGGAG 3113 Query 16580 ACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCC 16639 | || || | |||| || || ||| || |||||||| | | ||||||||||| | Sbjct 3114 AATGTGATTCGTGATTCTGTCACCTACACTGAGCACGCCAGGAGGAAGACTGTCACTGCT 3173 Query 16640 ATGGATATCGTCTATGC 16656 |||||| | |||||||| Sbjct 3174 ATGGATGTTGTCTATGC 3190 >seq2494 Length=21038 Score = 131 bits (144), Expect = 3e-26 Identities = 188/265 (71%), Gaps = 0/265 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || |||||||| || | || || ||||||||||| || || || ||||| ||||| Sbjct 9055 GCAAAGCGTCACCGGAAGGTGCTCCGTGATAACATCCAGGGTATTACTAAGCCTGCTATT 9114 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || ||| |||||||| | || ||||| |||||| | ||| || ||||||| |||| | Sbjct 9115 CGGCGTTTGGCTCGTAGGGGAGGAGTGAAGCGTATTAGTGGGCTGATCTATGAGGAGACT 9174 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| |||||||||||| || | ||| || || | ||| || | || || ||| Sbjct 9175 CGTGGTGTTTTGAAGATATTTTTGGAGAATGTGATTCGTGACTCTGTTACTTACACTGAG 9234 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 || |||| | ||||| || || | |||||| | || |||||| | || | ||||| Sbjct 9235 CATGCTAGGAGGAAGACGGTGACTGCTATGGATGTTGTGTATGCACTCAAGAGACAAGGA 9294 Query 16673 CGTAAGATTTATGGTTTTGGAAGTT 16697 | | | |||||||||||| ||| Sbjct 9295 AGGACTTTGTATGGTTTTGGAGGTT 9319 >seq17365 Length=16933 Score = 125 bits (138), Expect = 1e-24 Identities = 147/199 (74%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517 |||| || ||||| || ||||| ||||||||||| || | || |||||| | ||||| | Sbjct 2229 GAGACAATATCCAGGGTATCACTAAGCCAGCTATTCGCAGGCTTGCTCGTAGGGGTGGTG 2288 Query 16518 TCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCA 16577 | |||||| ||||||| | ||||||| |||| |||| || ||||||||||| | Sbjct 2289 TGAAGCGTATCTCTGGTCTAATCTATGAGGAGACCCGTGGAGTGTTGAAGATCTTTTTGG 2348 Query 16578 AGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCT 16637 ||| || || | |||| || | ||| || |||||||| | | |||||||| || Sbjct 2349 AGAATGTGATTCGTGATTCTGTAACCTACACTGAGCACGCCAGGAGGAAGACTGTTACTG 2408 Query 16638 CCATGGATATCGTCTATGC 16656 | |||||| | |||||||| Sbjct 2409 CTATGGATGTTGTCTATGC 2427 >seq2493 Length=15833 Score = 125 bits (138), Expect = 1e-24 Identities = 176/247 (71%), Gaps = 0/247 (0%) Strand=Plus/Minus Query 16453 TCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGG 16512 ||| || |||||||| ||||| ||||| ||||| || || | ||| | |||||| | || Sbjct 10839 TCTCCGTGATAACATTCAAGGTATCACTAAGCCTGCAATTAGGCGTTTAGCTCGTAGAGG 10780 Query 16513 TGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTT 16572 ||||| |||||| || |||| | ||||||| |||| ||||| ||||||||||| || Sbjct 10779 AGGAGTGAAGCGTATCAGTGGACTAATCTATGAGGAGACTCGTGGAGTTTTGAAGATATT 10720 Query 16573 CCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGT 16632 | ||| || || | |||| || | || || ||||| |||| | ||||| || Sbjct 10719 TTTGGAGAATGTGATTCGTGATTCTGTTACTTACACTGAGCATGCTAGGAGGAAGACGGT 10660 Query 16633 CACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 ||| | |||||| | || |||||| | || | ||||| | | | ||||| ||||| Sbjct 10659 CACTGCTATGGATGTTGTGTATGCACTCAAGAGGCAAGGAAGGACTCTATATGGATTTGG 10600 Query 16693 AAGTTAA 16699 ||||| Sbjct 10599 TGGTTAA 10593 >seq7163 Length=14272 Score = 123 bits (136), Expect = 4e-24 Identities = 172/241 (71%), Gaps = 0/241 (0%) Strand=Plus/Minus Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517 |||| ||||| |||||||| || ||||||||||| || | || |||||| | ||||| | Sbjct 12647 GAGACAACATTCAAGGAATTACAAAGCCAGCTATTCGAAGACTCGCTCGTAGAGGTGGTG 12588 Query 16518 TCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCA 16577 | |||||| | ||||| ||| | || ||||||| ||||| |||| |||||||||| | Sbjct 12587 TGAAGCGTATTTCTGGGTTGATTTACGAAGAGACTCGTGGTGTTCTGAAGATCTTTTTGG 12528 Query 16578 AGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCT 16637 | | || || | |||| || | || || || ||||||| | ||||| || || Sbjct 12527 AAAATGTGATTCGTGATTCTGTTACTTACACAGAACACGCTAGGAGAAAGACGGTTACTG 12468 Query 16638 CCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTT 16697 | |||||| | || ||||| | || | ||||| | | |||| || ||||| ||| Sbjct 12467 CTATGGATGTTGTTTATGCGCTTAAGAGGCAAGGAAGGACCCTTTACGGATTTGGGGGTT 12408 Query 16698 A 16698 | Sbjct 12407 A 12407 >seq34877 Length=7395 Score = 122 bits (134), Expect = 1e-23 Identities = 146/199 (73%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517 |||| || ||||| || ||||| ||||||||||| || | || |||||| | ||||| | Sbjct 4183 GAGACAATATCCAGGGTATCACTAAGCCAGCTATTCGCAGGCTTGCTCGTAGGGGTGGTG 4242 Query 16518 TCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCA 16577 | |||||| |||| || || ||||||| |||| |||| || |||||||| || | Sbjct 4243 TGAAGCGTATCTCCGGTCTGATCTATGAGGAGACCCGTGGAGTRTTGAAGATHTTTTTGG 4302 Query 16578 AGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCT 16637 ||| || || | ||| || || ||| || |||||||| | | |||||||| || Sbjct 4303 AGAATGTGATTCGTGACTCTGTCACCTACACTGAGCACGCCAGGAGGAAGACTGTTACTG 4362 Query 16638 CCATGGATATCGTCTATGC 16656 | |||||| | |||||||| Sbjct 4363 CTATGGATGTTGTCTATGC 4381 >seq32268 Length=14324 Score = 114 bits (126), Expect = 2e-21 Identities = 186/268 (69%), Gaps = 0/268 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || || ||||| || | | ||| || |||||||| || |||||||| ||||| || || Sbjct 7821 GCAAAACGTCACCGGAAAGTTCTCCGTGATAACATTCAGGGAATCACTAAGCCGGCGATA 7762 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 | | |||| | | |||||||| ||| | || |||||| |||||||||| | Sbjct 7761 AGGAGGTTGGCGAGAAGAGGTGGAGTGAAGAGAATCAGTGGATTAATCTATGAAGAAACA 7702 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 | | ||||||||||||||| | ||| || || | |||| || | ||||| || Sbjct 7701 AGAGGTGTTTTGAAGATCTTTTTGGAGAATGTGATTCGTGATTCTGTGACTTATACTGAA 7642 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 || |||| | |||||||| || | |||||| | || ||||| ||||| | ||||| Sbjct 7641 CATGCTAGGAGAAAGACTGTTACTGCTATGGATGTTGTTTATGCTTTGAAGAGACAAGGA 7582 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAAT 16700 | | ||||||| ||||| ||| || Sbjct 7581 AGGACTCTTTATGGGTTTGGTGGTTGAT 7554 >seq37838 Length=8837 Score = 111 bits (122), Expect = 2e-20 Identities = 148/205 (72%), Gaps = 7/205 (3%) Strand=Plus/Plus Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517 |||| |||||||| |||||||| ||||||||||| | | || |||||| | ||||| | Sbjct 7358 GAGACAACATCCAGGGAATCACTAAGCCAGCTATTCACAGGCTTGCTCGTAGGGGTGGTG 7417 Query 16518 TCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT----TCGTGATGTTTTGAAGATCTTC 16573 | |||||| ||||||| | ||||||| ||||| |||| || ||||||||||| Sbjct 7418 TGAAGCGTATCTCTGGTCTCATCTATGAGGAGATCGACCCGTGGAGTATTGAAGATCTTT 7477 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 | ||| || || | |||| | || ||| || ||||| | | | ||||||||| Sbjct 7478 TTGGAGAATGTGATTCGTGATTCCGTCACCTACACTGAGCATTCCAGGAGGAAGACTGTC 7537 Query 16634 ACCTCCATGGATATCGTCTATGCAT 16658 || | |||||| ||||||| || Sbjct 7538 ACTACTATGGAT---GTCTATGGAT 7559 >seq2263 Length=25198 Score = 107 bits (118), Expect = 3e-19 Identities = 184/267 (69%), Gaps = 0/267 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || || |||||||| | ||||| || |||||||| |||||||||||||| || || Sbjct 10140 GCAAAACGTCATCGTAAGGTGCTTCGTGACAACATCCAGGGAATCACCAAGCCTGCAATT 10199 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 | | |||| | | |||||||| ||| | || ||| ||| | |||||||||| Sbjct 10200 AGGAGGTTGGCGAGAAGAGGTGGAGTGAAGAGAATCAGTGGGTTGATTTATGAAGAGACA 10259 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 | | |||| | |||||||| | ||| || || | |||| || | ||| || ||| Sbjct 10260 AGAGGTGTTCTTAAGATCTTTTTGGAGAATGTGATTCGTGATTCTGTTACCTACACAGAG 10319 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 || |||| | |||||||| || | |||||| | || ||||| ||||| | ||||| Sbjct 10320 CATGCTAGGAGAAAGACTGTTACTGCTATGGATGTTGTTTATGCTTTGAAGAGACAAGGA 10379 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAA 16699 | | | ||||| || || ||||| Sbjct 10380 AGGACTCTCTATGGGTTCGGTGGTTAA 10406 >seq20684 Length=30228 Score = 84.2 bits (92), Expect = 3e-12 Identities = 162/239 (68%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || |||||||| || | | ||| || |||||||| || |||||||| || || || || Sbjct 29837 GCAAAGCGTCACCGGAAAGTTCTCCGTGATAACATTCAGGGAATCACTAAACCGGCGATA 29778 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 | | | || | | || ||||| ||| | || ||| ||| |||||||||| | Sbjct 29777 AGGAGGTTAGCGAGAAGAGGCGGAGTGAAGAGAATCAGTGGGTTGATCTATGAAGAAACA 29718 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 | | |||||||||||| || | ||| || || | |||| || | || || || Sbjct 29717 AGAGGTGTTTTGAAGATATTTTTGGAGAATGTGATTCGTGATTCTGTTACTTACACTGAA 29658 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 || |||| | || ||||| || | |||||| | || ||||| ||||| | ||||| Sbjct 29657 CATGCTAGGAGAAAAACTGTTACTGCTATGGATGTTGTTTATGCTTTGAAGAGACAAGG 29599 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79032598779642