Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20arcanum_20[genbank_20GCA_5F000612985.1_202014-03-22] 46,594 sequences; 665,186,956 total letters Query= NC_006882.2 Length=45176 Score E Sequences producing significant alignments: (Bits) Value seq20339 224 3e-54 seq12053 127 6e-25 seq22815 125 2e-24 seq7295 116 1e-21 seq94 114 4e-21 seq24164 109 2e-19 seq8506 107 6e-19 >seq20339 Length=39107 Score = 224 bits (248), Expect = 3e-54 Identities = 581/882 (66%), Gaps = 40/882 (5%) Strand=Plus/Plus Query 19392 GCCTTTATCGCAGCACCGCCTGTAGATATAGATGGCATACGTGAGCCAGTTTCCGGCTCG 19451 ||||| | || || || || ||||| || ||||| || | ||| | |||| | || Sbjct 1472 GCCTTCCTTGCTGCTCCTCCAGTAGACATTGATGGTATTCATGAAACTTTTTCAAGGTCT 1531 Query 19452 TTAATGTACGGAAACAATATTATTTCTGGAGCAGTAGTTCCAAGCTCCAATGCAATAGGA 19511 | | || |||||||| || |||| ||| | | || | || ||||||| Sbjct 1532 ATTCTTTATGGAAACAACATGATTT-----GCACTTCTGCCTACTTCTGCCACAATAGGT 1586 Query 19512 CTGCACTTTTATCCGATCTGGGAAGCCGGCA-CTTTAGATGAGTGGTTATACAACGGCGG 19570 | || ||||| || |||||||||| |||| | | ||||| ||||||||||| || | Sbjct 1587 TTACATTTTTACCCAATCTGGGAAGA-GGCATCCGTTGATGAATGGTTATACAATGGTTG 1645 Query 19571 TCCATATCAACTTGTTGTCTTCCACTTCTTAATAGGAGTAGCAGCATACGCTGGTAGACA 19630 || ||| |||| || | | ||||||||| | |||||| | ||| ||| | | Sbjct 1646 CCCTTATGAACTAATTTTTCTACACTTCTTACTTGGAGTATCTTGTTACATGGGTCGTGA 1705 Query 19631 GTGGGAACTATCTTACAGATTAGGAATGAGACCATGGATATTCGTAGCATATACAGCACC 19690 |||||| || || | | || | | ||| | ||| | || |||| | || | || Sbjct 1706 GTGGGATCTTAGTTTCCCTCTGGGTACGCCACCTTAGATTGTTGTTGCATGTTCAACTCC 1765 Query 19691 ACTATCAGCAGCTCTTGCTGTGTTTCTCGTTTACCCATTTGGGCAAGGGAGTTTTAGTGA 19750 | |||| || | || | || | | ||||| | || ||||| |||||| | | Sbjct 1766 CATTGCAGCTACTATCGCATTTTTCTTAATCAACCCAATAGGTCAAGGAAGTTTTTTTTA 1825 Query 19751 -TGGTATGCCTCTTGGTATCTCTGGTACTTTTAACTTTATGTTCGTATTCCAAGCAGAAC 19809 | |||||||||| || || || ||||||| || || ||| | ||||| | |||| Sbjct 1826 ATCGTATGCCTCTAGGATTCGCTAGTACTTTCAATTTCATGATTTTATTCTTGGATGAAC 1885 Query 19810 ACAATATCCTTATGCATCCGTTCCACATGCTCGGTGTTGCTGGCGTATTCGGTGGATCTC 19869 |||| ||||||||||| | || ||| || | || |||| ||| |||||||| || || | Sbjct 1886 ACAACATCCTTATGCACCTATTTCACTTGATAGGAGTTGTTGGGGTATTCGGCGGCTCCC 1945 Query 19870 TTTTCTCTGCTATGCACGGAAGTT---TGGTTACTTCCTCGATC-ATCAAGGAAACAACT 19925 | ||| | ||||| | | || |||| ||| || | || |||| |||| | | Sbjct 1946 TATTCAGTTCTATGAAT---ATTTCAATGGTAACT--CTAGTTCGATCAGGGAACCCATA 2000 Query 19926 GAGGATGTATCGCAGAACTATGGCTATAAGTTCGGGCAAGATGAAGAGACATATAATATT 19985 || || ||| || | || || | || || ||||| ||||| || ||||||| Sbjct 2001 GAAAGTGAATCTGCTAATGAAGGTTACAGATTGGGTCAAGAGGAAGAAACTTATAATAAC 2060 Query 19986 GTCGCTGCACACGGGTACTTTGGGAGATTGATATTTCAATATGCTTCTTTCAATAATTCT 20045 || | | || || || ||||| ||| ||| || ||||||||| |||||| || ||| Sbjct 2061 GTATCCACTCATGGTTATTTTGGCCGATGGATCTTCCAATATGCTAGTTTCAACAACTCT 2120 Query 20046 CGTTCTTTACATTTCTTTCTTGCTACTTTCCCCGTGGTTGGCATATGGCTTACCTCCATG 20105 ||| ||||||||| | || | | ||| || || || | || | | ||||| | | Sbjct 2121 TATTCGTTACATTTCATCCTAGTTGCTTGGCCTGTAGTATGTATCTAGTTTACCCCTTTA 2180 Query 20106 GGAATCTGCACTATGGCTTTCAACCTTAATGGTTTTAACTTTAACCAGTCAGTAGTTGA- 20164 || ||| |||||||||||| ||||| |||| ||| || || ||||| || | |||||| Sbjct 2181 GGTATCAACACTATGGCTTTTAACCTAAATGATTTCAATTTCAACCAATCTGCAGTTGAC 2240 Query 20165 TGTCAACGGAAAGATAATCCCAACATGGGCTGATGTATTAAATAGAGCTAACCTCGGATT 20224 |||| || | || || | | | |||||||| || | Sbjct 2241 AGTCA----------------------GGGTTATATAATTATCTGTGCTAACCTTGGTAT 2278 Query 20225 TGAAGTTATGCACGAGCGCAATGCTCATAACTTCCCACTTGA 20266 ||||||||||| || || ||||||||||||||||| || || Sbjct 2279 GGAAGTTATGCATGAACGTAATGCTCATAACTTCCCTCTAGA 2320 >seq12053 Length=52445 Score = 127 bits (140), Expect = 6e-25 Identities = 162/221 (73%), Gaps = 2/221 (1%) Strand=Plus/Minus Query 20047 GTTCTTTACATTTCTTTCTTGCTACTTTCCCCGTGGTTGGCATATGGCTTACCTCCATGG 20106 |||| ||||| ||||| || ||| ||| || || || | || ||| ||| | | | | Sbjct 51485 GTTCGTTACACTTCTTCCTAGCTGCTTGGCCTGTAGTACGTATCTGGTTTATCGCTTTAG 51426 Query 20107 GAATCTGCACTATGGCTTTCAACCTTAATGGTTTTAACTTTAACCAGTCAGTAGTTGA-T 20165 | ||| ||||||||||||||||||| |||||||| | || ||||| || |||||||| Sbjct 51425 GTATCAGCACTATGGCTTTCAACCTAAATGGTTTCAGTTTCAACCAATCTGTAGTTGACA 51366 Query 20166 GTCAACGGAAAGATAATCCCAACATGGGCTGATGTATTAAATAGAGCTAACCTCGGATTT 20225 ||| | || |||| || ||||||||| | | || |||||||| || | Sbjct 51365 GTC-AGGGTCGTGTAATTAACACTTGGGCTGATATCATCAACCRTGCTAACCTTGGTATG 51307 Query 20226 GAAGTTATGCACGAGCGCAATGCTCATAACTTCCCACTTGA 20266 ||||||||||| || || ||||||||||||||||| || || Sbjct 51306 GAAGTTATGCATGAACGTAATGCTCATAACTTCCCTCTAGA 51266 >seq22815 Length=10841 Score = 125 bits (138), Expect = 2e-24 Identities = 206/295 (70%), Gaps = 2/295 (1%) Strand=Plus/Plus Query 19773 GGTACTTTTAACTTTATGTTCGTATTCCAAGCAGAACACAATATCCTTATGCATCCGTTC 19832 |||||||| || | || | |||||||| | || ||||| ||||||||||| || || Sbjct 8713 GGTACTTTCAATGTCATTATTGTATTCCAGGATGACCACAACATCCTTATGCACCCATTT 8772 Query 19833 CACATGCTCGGTGTTGCTGGCGTATTCGGTGGATCTCTTTTCTCTGCTATGCACGGAAGT 19892 ||||| | || | ||||| ||| || || || || ||| ||||||||| | Sbjct 8773 CACATCTTAGGCCTAGCTGGTGTAAAAGGCGGCTCCCTATTCAGTGCTATGCATGCTTCC 8832 Query 19893 TTGGTTACTTCCTCGATCATCAAGGAAACAACTGAGGATGTATCGCAGAACTATGGCTAT 19952 ||||| ||||| | | |||| ||||| ||||| ||| ||| || | || || Sbjct 8833 TTGGTAACTTCTTGTTTGATCAGGGAAAGCACTGAAAATGAATCTGCTAATGAAGGTTAC 8892 Query 19953 AAGTTCGGGCAAGATGAAGAGACATATAATATTGTCGCTGCACACGGGTACTTTGGGAGA 20012 | ||||| ||||| ||||| || || ||||| || || || || | || |||| || Sbjct 8893 AGATTCGGTCAAGAGGAAGAAACTTAGAATATCGTAGCCGCGCATGCTTATATTGGCCGA 8952 Query 20013 TTGATATTTCAATATGCTTCTTTCAATAATTCTCGTTCTTTACATTTCTT-TCTT 20066 || || || ||||||||| ||| || || |||||||| |||| |||| |||| Sbjct 8953 TTAATCTTCCAATATGCTAGTTTYAACAACTCTCGTTC-GTACACATCTTCTCTT 9006 >seq7295 Length=63598 Score = 116 bits (128), Expect = 1e-21 Identities = 195/280 (70%), Gaps = 4/280 (1%) Strand=Plus/Plus Query 19773 GGTACTTTTAACTTTATGTTCGTATTCCAAGCAGAACACAATATCCTTATGCATCCGTTC 19832 |||||||| || || || | |||| || || || ||||| ||||||||||| || || Sbjct 43838 GGTACTTTGAATTTCCTGATTTTATTTCAGGCTGAGCACAACATCCTTATGCACCCATTT 43897 Query 19833 CACATGCTCGGTGTTGCTGGCGTATTCGGTGGATCTCTTTTCTCTGCTATGCACGGAAGT 19892 ||||| | || | ||||| ||| |||||||| || ||| ||||||||| || | Sbjct 43898 CACATCTTAGGCCTAGCTGGTGTAAAAGGTGGATCCCTATTCAGTGCTATGCA--TAATT 43955 Query 19893 --TTGGTTACTTCCTCGATCATCAAGGAAACAACTGAGGATGTATCGCAGAACTATGGCT 19950 ||||| ||||| | || | ||||| || | ||| ||| || | || | Sbjct 43956 CCTTGGTAACTTCTAGTTTTATTAGGGAAAGCACAAAAAATGAATCTGCTAATGAAGGTT 44015 Query 19951 ATAAGTTCGGGCAAGATGAAGAGACATATAATATTGTCGCTGCACACGGGTACTTTGGGA 20010 | | || | ||||| ||||| || || |||||||| || || || | || ||||| Sbjct 44016 AAATATTTGTTCAAGAAGAAGAAACTTAGAATATTGTAGCCGCTCATGCTTATTTTGGAC 44075 Query 20011 GATTGATATTTCAATATGCTTCTTTCAATAATTCTCGTTC 20050 ||||||| || ||||||||| |||||| || |||| ||| Sbjct 44076 GATTGATCTTACAATATGCTAGTTTCAACAACTCTCATTC 44115 Score = 107 bits (118), Expect = 6e-19 Identities = 204/296 (69%), Gaps = 6/296 (2%) Strand=Plus/Plus Query 19774 GTACTTTTAACTTTATGTTCGTATTCCAAGCAGAACACAATATCCTTATGCATCCGTTCC 19833 ||||||| || || ||| | ||||| ||||| || ||||| ||||||||||| || || | Sbjct 11017 GTACTTTCAATTTCATGATTGTATTTCAAGCTGAGCACAACATCCTTATGCACCCATTTC 11076 Query 19834 ACATGCTCGGTGTTGCTGGCGTATTCGGTGGATCTCTTTTCTCTGCTATGCACGGAAGT- 19892 | || | || | |||| ||| ||| |||| || || | ||||||| || | Sbjct 11077 ATATCATAGGCCTAACTGGTGTAAAAGGTTGATCCCTATTAAGTTCTATGCA--TAATTC 11134 Query 19893 -TTGGTTACTTCCTCGATCATCAAGGAAACAACTGAGGATGTATCGCAGAACTATGGCTA 19951 ||||| ||||| | || | ||||| || || ||| ||| || | || || Sbjct 11135 CTTGGTAACTTCTAGTTTGATTAGGGAAAGCACAGAAAATGAATCTGCTAATGAAGGTTA 11194 Query 19952 TAAGTTCGGGCAAGATGAAGAGACATATAATATTGTCGCTGCACACGGGTACTTTGGGAG 20011 | || | ||||| ||||| || || |||||| | || || || | || ||||| | Sbjct 11195 CAGATTTGTTCAAGAGGAAGAAACTTAGAATATTATAGCCGCTCATGCTTATTTTGGACG 11254 Query 20012 ATTGATATTTCAATATGCTTCTTTCAATAATTCTCGTTCTTTACATTTCTT-TCTT 20066 |||||| || ||||||||| |||||| || |||| ||| |||| |||| |||| Sbjct 11255 ATTGATCTTCCAATATGCTAGTTTCAAAAACTCTCATTC-GTACACATCTTCTCTT 11309 >seq94 Length=189492 Score = 114 bits (126), Expect = 4e-21 Identities = 142/192 (74%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 20052 TTACATTTCTTTCTTGCTACTTTCCCCGTGGTTGGCATATGGCTTACCTCCATGGGAATC 20111 ||||| ||||| | ||| ||| || || || || || ||| ||||| | | || ||| Sbjct 81682 TTACACTTCTTCCGAGCTGCTTGGCCTGTAGTAGGTATCTGGTTTACCGCTTTAGGTATC 81623 Query 20112 TGCACTATGGCTTTCAACCTTAATGGTTTTAACTTTAACCAGTCAGTAGTTGAT-GTCAA 20170 ||||||||||||||||||| |||||||| || || ||||| || ||||||||| |||| Sbjct 81622 AGCACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAG 81563 Query 20171 CGGAAAGATAATCCCAACATGGGCTGATGTATTAAATAGAGCTAACCTCGGATTTGAAGT 20230 | | | |||| || ||||| ||| | | || | |||||||| || ||||||| Sbjct 81562 TGTCATG-TAATTAACACTTGGGCCGATATCATCAACCGTGCTAACCTTGGTATTGAAGT 81504 Query 20231 TATGCACGAGCG 20242 |||||| || || Sbjct 81503 TATGCATGAACG 81492 Score = 109 bits (120), Expect = 2e-19 Identities = 141/192 (73%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 20052 TTACATTTCTTTCTTGCTACTTTCCCCGTGGTTGGCATATGGCTTACCTCCATGGGAATC 20111 ||||| ||||| | ||| ||| || || || || || ||| ||||| | | || ||| Sbjct 88211 TTACACTTCTTCCGAGCTGCTTGGCCTGTAGTAGGTATCTGGTTTACCGCTTTAGGTATC 88152 Query 20112 TGCACTATGGCTTTCAACCTTAATGGTTTTAACTTTAACCAGTCAGTAGTTGAT-GTCAA 20170 ||||||||||||||||||| |||||||| || || ||||| || ||||||||| |||| Sbjct 88151 AGCACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAG 88092 Query 20171 CGGAAAGATAATCCCAACATGGGCTGATGTATTAAATAGAGCTAACCTCGGATTTGAAGT 20230 | | | |||| || ||||| ||| | | || | |||||||| || | ||||| Sbjct 88091 TGTCATG-TAATTAACACTTGGGCCGATATCATCAACCGTGCTAACCTTGGTATGGAAGT 88033 Query 20231 TATGCACGAGCG 20242 |||||| || || Sbjct 88032 TATGCATGAACG 88021 >seq24164 Length=10202 Score = 109 bits (120), Expect = 2e-19 Identities = 119/158 (75%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 19723 ACCCATTTGGGCAAGGGAGTTTTAGTGATGGTATGCCTCTTGGTATCTCTGGTACTTTTA 19782 ||||| | || |||| |||||| ||||| ||||||||| || ||||||||||||| | Sbjct 3434 ACCCAATCGGTTAAGGAAGTTTTTCTGATGCTATGCCTCTAGGAGTCTCTGGTACTTTCA 3493 Query 19783 ACTTTATGTTCGTATTCCAAGCAGAACACAATATCCTTATGCATCCGTTCCACATGCTCG 19842 | || ||| | ||||||| || |||||||| ||||||||||| || || ||| | | Sbjct 3494 ATTTCATGATTATATTCCAGGCTGAACACAACATCCTTATGCACTTATTTCATATGTTAG 3553 Query 19843 GTGTTGCTGGCGTATTCGGTGGATCTCTTTTCTCTGCT 19880 ||| || | |||||||| || || || ||| |||| Sbjct 3554 ATGTATCTAGGGTATTCGGCGGCTCCCTATTCAGTGCT 3591 >seq8506 Length=47589 Score = 107 bits (118), Expect = 6e-19 Identities = 79/92 (86%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 19740 AGTTTTAGTGATGGTATGCCTCTTGGTATCTCTGGTACTTTTAACTTTATGTTCGTATTC 19799 |||||| ||||||||||||||| || |||||||||||||| || || ||| | |||||| Sbjct 40171 AGTTTTTCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAATTTCATGATTGTATTC 40112 Query 19800 CAAGCAGAACACAATATCCTTATGCATCCGTT 19831 ||||| |||||||| ||||||||||| || || Sbjct 40111 CAAGCTGAACACAACATCCTTATGCACCCATT 40080 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 144361679921064