Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20arcanum_20[genbank_20GCA_5F000612985.1_202014-03-22] 46,594 sequences; 665,186,956 total letters Query= NC_006883.2 Length=252401 Score E Sequences producing significant alignments: (Bits) Value seq20339 230 4e-55 seq12053 158 2e-33 seq94 141 1e-28 seq17483 105 1e-17 seq22815 102 1e-16 seq8506 98.7 2e-15 seq24164 84.2 4e-11 >seq20339 Length=39107 Score = 230 bits (254), Expect = 4e-55 Identities = 593/898 (66%), Gaps = 39/898 (4%) Strand=Plus/Plus Query 211672 GCATTCATCGCAGCACCTCCCGTTGATATCGACGGAATCCGTGAACCAGTAGCTGGTTC- 211730 || ||| | || || ||||| || || || || || || | |||| | | | | || Sbjct 1472 GCCTTCCTTGCTGCTCCTCCAGTAGACATTGATGGTATTCATGAAACTTTTTCAAGGTCT 1531 Query 211731 ATTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCTTCAAACGCAATCGG 211790 |||| | ||||| |||||||| || | ||| || | || |||| | |||| || Sbjct 1532 ATTCTT-TATGGAAACAACATGATTT-----GCACTTCTGCCTACTTCTGCCACAATAGG 1585 Query 211791 TTTACACTTCTATCCTATCTGGGAAGCAGCAACTCTTGATGAGTGGCTCTACAATGGTGG 211850 |||||| || || || |||||||||| ||| | ||||||| ||| | ||||||||| | Sbjct 1586 TTTACATTTTTACCCAATCTGGGAAGAGGCATCCGTTGATGAATGGTTATACAATGGTTG 1645 Query 211851 TCCTTACCAGTTGGTAATCTTCCACTTCCTTATCGGAATCTCAGCATACATGGGAAGACA 211910 ||||| | | | | | |||||| | | ||| | || |||||||| | | Sbjct 1646 CCCTTATGAACTAATTTTTCTACACTTCTTACTTGGAGTATCTTGTTACATGGGTCGTGA 1705 Query 211911 GTGGGAACTTTCATACCGTTTAGGTATGCGTCCTTGGATCTGTGTTGCTTATTCAGCACC 211970 |||||| ||| | || | | |||| || |||| ||| |||||| | |||| | || Sbjct 1706 GTGGGATCTTAGTTTCCCTCTGGGTACGCCACCTTAGATTGTTGTTGCATGTTCAACTCC 1765 Query 211971 TGTATCAGCAGCTTTCGCTGTATTCCTTGTTTACCCATTCGGTCAGGGT--TCATTCTCA 212028 | |||| || |||| | ||| | | ||||| | ||||| || | || | | Sbjct 1766 CATTGCAGCTACTATCGCATTTTTCTTAATCAACCCAATAGGTCAAGGAAGTTTTTTTTA 1825 Query 212029 GACGGTATGCCTTTAGGTATATCAGGAACATTCAACTTCATGTTCGTATTCCAAGCAGAA 212088 || ||||||| |||| | | | || ||||| |||||| | ||||| | ||| Sbjct 1826 ATCG-TATGCCTCTAGGATTCGCTAGTACTTTCAATTTCATGATTTTATTCTTGGATGAA 1884 Query 212089 CATAACATCCTTATGCACCCATTCCATATGGCAGGTGTTGCAGGTATGTTCGGTGGAGCA 212148 || |||||||||||||||| ||| || || ||| |||| || | ||||| || | Sbjct 1885 CACAACATCCTTATGCACCTATTTCACTTGATAGGAGTTGTTGGGGTATTCGGCGGCTCC 1944 Query 212149 TTATTCTCTGCTATGCACGGTTCTCTTGTTACATCTTCACTT--ATCCGTGAAACCACTG 212206 ||||| | ||||| | ||| | || || ||| | || ||| | ||| ||| | Sbjct 1945 CTATTCAGTTCTATGAATATTTCAATGGTAAC-TCT--AGTTCGATCAGGGAACCCATAG 2001 Query 212207 GTTTAGATTCACAGAACTATGGTTACAAGTTCGGACAAGAAGAAGAGACATATAACATCG 212266 || || || | ||||||| || || ||||| ||||| || ||||| | || Sbjct 2002 AAAGTGAATCTGCTAATGAAGGTTACAGATTGGGTCAAGAGGAAGAAACTTATAATAACG 2061 Query 212267 TTGCTGCACATGGATACTTCGGTAGACTTATCTTCCAGTATGCATCATTCAACAACAGCA 212326 | | | ||||| || || || || |||||||| ||||| ||||||||| Sbjct 2062 TATCCACTCATGGTTATTTTGGCCGATGGATCTTCCAATATGCTAGTTTCAACAACTCTT 2121 Query 212327 GAAGTTTACACTTCTTCCTCGCATCATGGCCTGTTATCTGTGTATGGTTAACCTCTATGG 212386 ||||| ||| |||| | | |||||||| | ||| | | ||| ||| || | | Sbjct 2122 ATTCGTTACATTTCATCCTAGTTGCTTGGCCTGTAGTATGTATCTAGTTTACCCCTTTAG 2181 Query 212387 GTATCTGCACAATGGCATTCAACCTAAATGGATTCAACTTCAACCAATCAGTTGTTGATG 212446 ||||| ||| ||||| || |||||||||| ||||| ||||||||||| | ||||| Sbjct 2182 GTATCAACACTATGGCTTTTAACCTAAATGATTTCAATTTCAACCAATCTGCAGTTGA-- 2239 Query 212447 CATCAGGTAAGGTTGTTCCTACTTGGGGTGATGTTCTTAACAGAGCAAACCTTGGTATGG 212506 ||| | |||| || | ||| | | || ||||||||||||| Sbjct 2240 ---CAG----------------TCAGGGTTATATAATTATCTGTGCTAACCTTGGTATGG 2280 Query 212507 AAGTTATGCACGAAAGAAATGCACACAACTTCCCACTTGACTTAGCATCTGCTAACGA 212564 |||||||||| ||| | ||||| || |||||||| || ||| | |||||||||||| Sbjct 2281 AAGTTATGCATGAACGTAATGCTCATAACTTCCCTCTAGACCT---ATCTGCTAACGA 2335 >seq12053 Length=52445 Score = 158 bits (174), Expect = 2e-33 Identities = 168/219 (77%), Gaps = 4/219 (2%) Strand=Plus/Minus Query 212332 TTACACTTCTTCCTCGCATCATGGCCTGTTATCTGTGTATGGTTAACCTCTATGGGTATC 212391 |||||||||||||| || | |||||||| | || | ||||| | | || | |||||| Sbjct 51480 TTACACTTCTTCCTAGCTGCTTGGCCTGTAGTACGTATCTGGTTTATCGCTTTAGGTATC 51421 Query 212392 TGCACAATGGCATTCAACCTAAATGGATTCAACTTCAACCAATCAGTTGTTGATGCA-TC 212450 |||| ||||| |||||||||||||| |||| ||||||||||| || ||||| || || Sbjct 51420 AGCACTATGGCTTTCAACCTAAATGGTTTCAGTTTCAACCAATCTGTAGTTGA--CAGTC 51363 Query 212451 A-GGTAAGGTTGTTCCTACTTGGGGTGATGTTCTTAACAGAGCAAACCTTGGTATGGAAG 212509 | ||| || || ||||||| |||| | | ||| || |||||||||||||||| Sbjct 51362 AGGGTCGTGTAATTAACACTTGGGCTGATATCATCAACCRTGCTAACCTTGGTATGGAAG 51303 Query 212510 TTATGCACGAAAGAAATGCACACAACTTCCCACTTGACT 212548 ||||||| ||| | ||||| || |||||||| || |||| Sbjct 51302 TTATGCATGAACGTAATGCTCATAACTTCCCTCTAGACT 51264 >seq94 Length=189492 Score = 141 bits (156), Expect = 1e-28 Identities = 147/190 (77%), Gaps = 2/190 (1%) Strand=Plus/Minus Query 212332 TTACACTTCTTCCTCGCATCATGGCCTGTTATCTGTGTATGGTTAACCTCTATGGGTATC 212391 ||||||||||||| || | |||||||| | || | ||||| ||| || | |||||| Sbjct 88211 TTACACTTCTTCCGAGCTGCTTGGCCTGTAGTAGGTATCTGGTTTACCGCTTTAGGTATC 88152 Query 212392 TGCACAATGGCATTCAACCTAAATGGATTCAACTTCAACCAATCAGTTGTTGATGCATCA 212451 |||| ||||| |||||||||||||| ||||| ||||||||||| || |||||| ||| Sbjct 88151 AGCACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGAT-AGTCA 88093 Query 212452 G-GTAAGGTTGTTCCTACTTGGGGTGATGTTCTTAACAGAGCAAACCTTGGTATGGAAGT 212510 | || | || || ||||||| ||| | | ||| | || ||||||||||||||||| Sbjct 88092 GTGTCATGTAATTAACACTTGGGCCGATATCATCAACCGTGCTAACCTTGGTATGGAAGT 88033 Query 212511 TATGCACGAA 212520 |||||| ||| Sbjct 88032 TATGCATGAA 88023 Score = 138 bits (152), Expect = 2e-27 Identities = 146/190 (77%), Gaps = 2/190 (1%) Strand=Plus/Minus Query 212332 TTACACTTCTTCCTCGCATCATGGCCTGTTATCTGTGTATGGTTAACCTCTATGGGTATC 212391 ||||||||||||| || | |||||||| | || | ||||| ||| || | |||||| Sbjct 81682 TTACACTTCTTCCGAGCTGCTTGGCCTGTAGTAGGTATCTGGTTTACCGCTTTAGGTATC 81623 Query 212392 TGCACAATGGCATTCAACCTAAATGGATTCAACTTCAACCAATCAGTTGTTGATGCATCA 212451 |||| ||||| |||||||||||||| ||||| ||||||||||| || |||||| ||| Sbjct 81622 AGCACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGAT-AGTCA 81564 Query 212452 G-GTAAGGTTGTTCCTACTTGGGGTGATGTTCTTAACAGAGCAAACCTTGGTATGGAAGT 212510 | || | || || ||||||| ||| | | ||| | || ||||||||||| ||||| Sbjct 81563 GTGTCATGTAATTAACACTTGGGCCGATATCATCAACCGTGCTAACCTTGGTATTGAAGT 81504 Query 212511 TATGCACGAA 212520 |||||| ||| Sbjct 81503 TATGCATGAA 81494 >seq17483 Length=27858 Score = 105 bits (116), Expect = 1e-17 Identities = 262/390 (67%), Gaps = 12/390 (3%) Strand=Plus/Plus Query 194583 GAAACCTGAGTATGTATTTCTTGCTGCTGCTAAGGTAGGTGGTATAGGTGGTAACTCTAC 194642 ||||||| | || || | || || || || || || || || ||| | ||| ||| Sbjct 17379 GAAACCTCAATACGTCATCCTCGCAGCCGCGAAAGTCGGCGGCATACACGCAAACAATAC 17438 Query 194643 CTATCCTGCCGATTTCATCTATGACAATCTGATGATTCAGACAAATGTTATTG----ATG 194698 || || || ||||||||| | |||||| || || || || ||||| | || Sbjct 17439 TTACCCAGCTGATTTCATCACTATAAATCTGCAAATCCAAACGAACGTTATCGTTTCATC 17498 Query 194699 CTGCATATCGTAATGGAGTTAAGAAACTATTGTTTCTAGGTTCATCTTGCATCTATCCTA 194758 || || ||| || |||| |||| || |||| || ||||| || || || || |||| Sbjct 17499 CTTCA-ATCACAA---AGTTCAGAAGCTTCTGTTCCTTGGTTCTTCATGTATTTACCCTA 17554 Query 194759 AGTTTCCAAAGATACCTATTACAGAGGAT-CAGTTACTTGCTAGTCCTTTGGAAGAATCT 194817 | ||| | ||| ||| | || || || || | || |||||||||| | Sbjct 17555 AATTTGCTCCTCAACCAATTCCTGAAAATGCACTTT-TAACTGCTCCTTTGGAACCTACA 17613 Query 194818 AAT-AGTGCTTATGCAATTGCAAAGATAGCAGGTATGAGGATGTGTCAAGCATATCGTCA 194876 ||| | || | |||||||||| || || || ||||| | ||||||||||| ||| | Sbjct 17614 AATGAATGGT-ATGCAATTGCGAAAATTGCTGGTATTAAAATGTGTCAAGCTTATAGATT 17672 Query 194877 GCAGTATGGATTTAATGCAATATCATTAATGCCTACTAATCTATACGGACCTAATGATAA 194936 |||| || ||| ||||||| ||| ||||||||| ||| |||| || | ||||| || Sbjct 17673 GCAGCATAACTTTGATGCAATTTCAGCAATGCCTACGAATTTATATGGTACGAATGACAA 17732 Query 194937 TTTTGATATTAATAATGGTCATGTATTACC 194966 ||| || | | ||| |||||| || || Sbjct 17733 TTTCCATCCTGAGAATTCTCATGTTTTGCC 17762 >seq22815 Length=10841 Score = 102 bits (112), Expect = 1e-16 Identities = 184/270 (68%), Gaps = 0/270 (0%) Strand=Plus/Plus Query 212053 GGAACATTCAACTTCATGTTCGTATTCCAAGCAGAACATAACATCCTTATGCACCCATTC 212112 || || ||||| |||| | |||||||| | || || |||||||||||||||||||| Sbjct 8713 GGTACTTTCAATGTCATTATTGTATTCCAGGATGACCACAACATCCTTATGCACCCATTT 8772 Query 212113 CATATGGCAGGTGTTGCAGGTATGTTCGGTGGAGCATTATTCTCTGCTATGCACGGTTCT 212172 || || ||| | || ||| | || || | ||||| ||||||||| | ||| Sbjct 8773 CACATCTTAGGCCTAGCTGGTGTAAAAGGCGGCTCCCTATTCAGTGCTATGCATGCTTCC 8832 Query 212173 CTTGTTACATCTTCACTTATCCGTGAAACCACTGGTTTAGATTCACAGAACTATGGTTAC 212232 | || || |||| | ||| | |||| ||||| || || || | |||||| Sbjct 8833 TTGGTAACTTCTTGTTTGATCAGGGAAAGCACTGAAAATGAATCTGCTAATGAAGGTTAC 8892 Query 212233 AAGTTCGGACAAGAAGAAGAGACATATAACATCGTTGCTGCACATGGATACTTCGGTAGA 212292 | ||||| ||||| ||||| || || || ||||| || || |||| || | || || Sbjct 8893 AGATTCGGTCAAGAGGAAGAAACTTAGAATATCGTAGCCGCGCATGCTTATATTGGCCGA 8952 Query 212293 CTTATCTTCCAGTATGCATCATTCAACAAC 212322 | |||||||| ||||| || |||||| Sbjct 8953 TTAATCTTCCAATATGCTAGTTTYAACAAC 8982 >seq8506 Length=47589 Score = 98.7 bits (108), Expect = 2e-15 Identities = 75/89 (84%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 212023 TTCTCAGACGGTATGCCTTTAGGTATATCAGGAACATTCAACTTCATGTTCGTATTCCAA 212082 || || || ||||||||| |||| || || || || ||||| |||||| | ||||||||| Sbjct 40168 TTTTCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAATTTCATGATTGTATTCCAA 40109 Query 212083 GCAGAACATAACATCCTTATGCACCCATT 212111 || ||||| |||||||||||||||||||| Sbjct 40108 GCTGAACACAACATCCTTATGCACCCATT 40080 >seq24164 Length=10202 Score = 84.2 bits (92), Expect = 4e-11 Identities = 93/124 (75%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 212003 ACCCATTCGGTCAGGGTTCATTCTCAGACGGTATGCCTTTAGGTATATCAGGAACATTCA 212062 ||||| ||||| | || || || || | ||||||| |||| | || || || |||| Sbjct 3434 ACCCAATCGGTTAAGGAAGTTTTTCTGATGCTATGCCTCTAGGAGTCTCTGGTACTTTCA 3493 Query 212063 ACTTCATGTTCGTATTCCAAGCAGAACATAACATCCTTATGCACCCATTCCATATGGCAG 212122 | |||||| | ||||||| || ||||| ||||||||||||||| ||| |||||| || Sbjct 3494 ATTTCATGATTATATTCCAGGCTGAACACAACATCCTTATGCACTTATTTCATATGTTAG 3553 Query 212123 GTGT 212126 ||| Sbjct 3554 ATGT 3557 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 807084859662640