Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20arcanum_20[genbank_20GCA_5F000612985.1_202014-03-22] 46,594 sequences; 665,186,956 total letters Query= NC_006884.2 Length=178249 Score E Sequences producing significant alignments: (Bits) Value seq20339 224 1e-53 seq28432 141 1e-28 seq4487 140 4e-28 seq12053 131 2e-25 seq22815 127 2e-24 seq8364 114 1e-20 seq94 111 2e-19 seq7295 107 2e-18 seq8506 102 9e-17 seq24164 91.5 2e-13 >seq20339 Length=39107 Score = 224 bits (248), Expect = 1e-53 Identities = 590/894 (66%), Gaps = 41/894 (5%) Strand=Plus/Plus Query 170768 GCATTCATCGCTGCTCCTCCAGTCGATATCGACGGAATCAGAGAACCAGTTGCGGGTTCT 170827 || ||| | |||||||||||||| || || || || || ||| | || | | ||| Sbjct 1472 GCCTTCCTTGCTGCTCCTCCAGTAGACATTGATGGTATTCATGAAACTTTTTCAAGGTCT 1531 Query 170828 -TTCTTATATGGTAACAACATCATCTCTGGTGCTGTAGTTCCATCTTCAAACGCAATAGG 170886 ||||| ||||| |||||||| || | | ||| || |||| | ||||||| Sbjct 1532 ATTCTT-TATGGAAACAACATGATTTGCACTTCTG-----CCTACTTCTGCCACAATAGG 1585 Query 170887 ATTACACTTCTATCCCATCTGGGAAGCAGCCACTATGGACGAGTGGTTGTACAACGGAGG 170946 ||||| || || || |||||||||| || | | || || ||||| ||||| || | Sbjct 1586 TTTACATTTTTACCCAATCTGGGAAGAGGCATCCGTTGATGAATGGTTATACAATGGTTG 1645 Query 170947 TCCTTACCAGTTAGTTATTTTCCACTTCCTTATTGGAATCTCTGCCTACATGGGTAGACA 171006 ||||| | || || || | |||||| | ||||| | ||| ||||||||| | | Sbjct 1646 CCCTTATGAACTAATTTTTCTACACTTCTTACTTGGAGTATCTTGTTACATGGGTCGTGA 1705 Query 171007 GTGGGAACTATCATACAGACTAGGAATGAGACCTTGGATATGTGTAGCATACTCAGCACC 171066 |||||| || | | || || | | ||||| ||| ||| |||| ||| | || Sbjct 1706 GTGGGATCTTAGTTTCCCTCTGGGTACGCCACCTTAGATTGTTGTTGCATGTTCAACTCC 1765 Query 171067 TGTATCTGCAGCATTTGCAGTATTCCTTGTGTATCCATTCGGTCAGGG---TTCATTCTC 171123 | | || | | ||| | ||| | | | ||| | ||||| || || || | Sbjct 1766 CATTGCAGCTACTATCGCATTTTTCTTAATCAACCCAATAGGTCAAGGAAGTT--TTTTT 1823 Query 171124 TGATGGTATGCCACTAGGTATCTCAGGTACGTTCAACTTCATGTTCGTGTTCCAAGCAGA 171183 | || ||||||| ||||| || | |||| ||||| |||||| | | ||| | || Sbjct 1824 TAATCGTATGCCTCTAGGATTCGCTAGTACTTTCAATTTCATGATTTTATTCTTGGATGA 1883 Query 171184 ACACAACATACTAATGCACCCCTTCCATATGGCAGGTGTAGCAGGTATGTTCGGTGGTAG 171243 ||||||||| || ||||||| || || || ||| || | || | ||||| || Sbjct 1884 ACACAACATCCTTATGCACCTATTTCACTTGATAGGAGTTGTTGGGGTATTCGGCGGCTC 1943 Query 171244 TCTCTTCAGTGCAATGCACGGTTCTCTAGTGACATCTTCTCTAATCAGAGAGACAACTGA 171303 || |||||| | ||| | ||| | || || ||| | ||||| || | | | Sbjct 1944 CCTATTCAGTTCTATGAATATTTCAATGGTAAC-TCTAGTTCGATCAGGGAACCCAT--A 2000 Query 171304 GAACGAGAGTCAA--AACTACGGCTATAAGTTCGGACAAGAAGAAGAAACATATAACATT 171361 ||| | || || || | || || | || || ||||| |||||||| ||||| | Sbjct 2001 GAAAGTGAATCTGCTAATGAAGGTTACAGATTGGGTCAAGAGGAAGAAACTTATAATAAC 2060 Query 171362 GTTGCTGCTCATGGATACTTCGGTAGATTAATCTTCCAGTATGCATCATTCAACAACTCT 171421 || | ||||||| || || || ||| |||||||| ||||| |||||||||||| Sbjct 2061 GTATCCACTCATGGTTATTTTGGCCGATGGATCTTCCAATATGCTAGTTTCAACAACTCT 2120 Query 171422 CGTTCATTACACTTCTTCCTCGCTGTATTCCCTGTAGTCTGTGTATGGTTAACCTCTATG 171481 ||| ||||| ||| |||| | || | |||||||| ||| | | ||| ||| || | Sbjct 2121 TATTCGTTACATTTCATCCTAGTTGCTTGGCCTGTAGTATGTATCTAGTTTACCCCTTTA 2180 Query 171482 GGTATCTGTACAATGGCATTCAACCTTAACGGATTCAACTTCAACCAATCAGTTGTAGAT 171541 |||||| || ||||| || ||||| || | ||||| ||||||||||| || || | Sbjct 2181 GGTATCAACACTATGGCTTTTAACCTAAATGATTTCAATTTCAACCAATC---TGCAGTT 2237 Query 171542 GCAAACGGAAAGATTGTACCAACATGGGGAGATGTTCTTAACAGAGCAAACCTTGGAATG 171601 | || | | ||| || | ||| | | || |||||||| ||| Sbjct 2238 G---ACAGTCA---------------GGGTTATATAATTATCTGTGCTAACCTTGGTATG 2279 Query 171602 GAAGTTATGCATGAAAGAAATGCACACAACTTCCCACTAGACCTAGCATCTGCT 171655 ||||||||||||||| | ||||| || |||||||| |||||||| ||||||| Sbjct 2280 GAAGTTATGCATGAACGTAATGCTCATAACTTCCCTCTAGACCT---ATCTGCT 2330 >seq28432 Length=6024 Score = 141 bits (156), Expect = 1e-28 Identities = 237/340 (70%), Gaps = 2/340 (1%) Strand=Plus/Minus Query 172494 GAAGAAACTTATAGTATGATTACTGCTAACAGATTCTGGTCACAGATATTTGGTATAGCA 172553 |||||||||||| ||| | || ||||| | | ||||| | || ||||| | || Sbjct 4822 GAAGAAACTTATTCAATGGTCACCGCTAAACGCCTTTGGTCCGAAATCTTTGGGGTTGCT 4763 Query 172554 TTTTCAAACAAAAGATTCTTACACTTCCTTATGTTGTTCGTACCTGTCATGGGTATGTGG 172613 ||||| | ||| | | ||||| ||| ||||||| || || || || | ||| | ||| Sbjct 4762 TTTTCCACTAAATGTTGGTTACATTTCTTTATGTTATTTGTGCCAGTAACAGGTTTATGG 4703 Query 172614 ACATCATCTATAGGTATCGTAGGTCTTGCACTTAACCTCAGAGCATACGACTTTGTATCT 172673 | || | || | || ||||| ||||| ||||| | | || ||||| || ||| Sbjct 4702 ATGAGTCCTCTTGGAGTAGTCGGTCTAGCACTAAACCTACGTGTCTATGACTTCGTTTCT 4643 Query 172674 CAAGAGATAAGAGCAGCAGAAGACCCAGAGTTTGAAACCTTCTACACTAAGAACATTCTT 172733 || || || | ||||||||||| || || ||||| || |||||||| | || ||| || Sbjct 4642 CAGGAAATTCGCGCAGCAGAAGATCCTGAATTTGAGACTTTCTACACCTAAAATATT-TT 4584 Query 172734 CTT-AATGAAGGTATGAGAGCATGGATGTCATCTGTCGATCAACCCCATGAGAACTTTGT 172792 ||| || ||||||| | || |||||| | || |||||||| ||||| ||| || | Sbjct 4583 CTTAAACAAAGGTATTTGCGCTTGGATGGCGACTTAAGATCAACCTCATGAAAACCTTAT 4524 Query 172793 GTTCCCAGAAGAAGTCTTGCCACGAGGCAACGCACTATAA 172832 ||||| || || || | ||||| || || || || ||| Sbjct 4523 ATTCCCTGAGGAGGTTCTACCACGTGGAAAGGCTCTTTAA 4484 >seq4487 Length=163179 Score = 140 bits (154), Expect = 4e-28 Identities = 235/339 (69%), Gaps = 2/339 (1%) Strand=Plus/Plus Query 172495 AAGAAACTTATAGTATGATTACTGCTAACAGATTCTGGTCACAGATATTTGGTATAGCAT 172554 ||||||||||| ||| | || ||||| | | |||| || || ||||| | || | Sbjct 119434 AAGAAACTTATTCAATGGTCACCACTAACCGCCTTTGGTACCAAATCTTTGGGGTTGCTT 119493 Query 172555 TTTCAAACAAAAGATTCTTACACTTCCTTATGTTGTTCGTACCTGTCATGGGTATGTGGA 172614 |||| || ||| | | ||||| ||| ||||||| || ||||| || | ||| | |||| Sbjct 119494 TTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACMGGTTTATGGA 119553 Query 172615 CATCATCTATAGGTATCGTAGGTCTTGCACTTAACCTCAGAGCATACGACTTTGTATCTC 172674 || | || | || ||||| || || ||||| | || || ||||| || |||| Sbjct 119554 TGAGTGCTCTTGGAGTAGTCGGTCTAGCGCTGAACCTACGTGCCTATGACTTYGTTTCTC 119613 Query 172675 AAGAGATAAGAGCAGCAGAAGACCCAGAGTTTGAAACCTTCTACA-CTAAGAACATTCTT 172733 | || || | ||||| ||||| || || ||||| || ||||||| |||| || ||||| Sbjct 119614 AGGAAATTCGCGCAGCGGAAGATCCTGAATTTGAGACTTTCTACAGCTAA-AATATTCTC 119672 Query 172734 CTTAATGAAGGTATGAGAGCATGGATGTCATCTGTCGATCAACCCCATGAGAACTTTGTG 172793 | ||||||||||| | | |||||| | | ||||| || ||||| ||| || | Sbjct 119673 TTAAATGAAGGTATTCGCACTTGGATGGCGGTTCAAGATCAGCCTCATGAAAACCTTATA 119732 Query 172794 TTCCCAGAAGAAGTCTTGCCACGAGGCAACGCACTATAA 172832 |||| || || || | ||||| || || || || ||| Sbjct 119733 TTCCYTGAGGAGGTTCTACCACGTGGAAAGGCTCTTTAA 119771 >seq12053 Length=52445 Score = 131 bits (144), Expect = 2e-25 Identities = 167/225 (74%), Gaps = 8/225 (4%) Strand=Plus/Minus Query 171423 GTTCATTACACTTCTTCCTCGCTGTATTCCCTGTAGTCTGTGTATGGTTAACCTCTATGG 171482 |||| |||||||||||||| |||| | |||||||| || | ||||| | | || | | Sbjct 51485 GTTCGTTACACTTCTTCCTAGCTGCTTGGCCTGTAGTACGTATCTGGTTTATCGCTTTAG 51426 Query 171483 GTATCTGTACAATGGCATTCAACCTTAACGGATTCAACTTCAACCAATCAGTTGTAGATG 171542 ||||| | || ||||| |||||||| || || |||| ||||||||||| || || || Sbjct 51425 GTATCAGCACTATGGCTTTCAACCTAAATGGTTTCAGTTTCAACCAATCTGTAGTTGA-- 51368 Query 171543 CAAAC-GGAAAGATTGTACC-AACA--TGGGGAGATGTTCTTAACAGAGCAAACCTTGGA 171598 || | || | |||| |||| |||| ||| | | ||| || |||||||| Sbjct 51367 CAGTCAGGGTCG--TGTAATTAACACTTGGGCTGATATCATCAACCRTGCTAACCTTGGT 51310 Query 171599 ATGGAAGTTATGCATGAAAGAAATGCACACAACTTCCCACTAGAC 171643 |||||||||||||||||| | ||||| || |||||||| |||||| Sbjct 51309 ATGGAAGTTATGCATGAACGTAATGCTCATAACTTCCCTCTAGAC 51265 >seq22815 Length=10841 Score = 127 bits (140), Expect = 2e-24 Identities = 203/291 (70%), Gaps = 1/291 (0%) Strand=Plus/Plus Query 171149 GGTACGTTCAACTTCATGTTCGTGTTCCAAGCAGAACACAACATACTAATGCACCCCTTC 171208 ||||| ||||| |||| | || ||||| | || |||||||| || |||||||| || Sbjct 8713 GGTACTTTCAATGTCATTATTGTATTCCAGGATGACCACAACATCCTTATGCACCCATTT 8772 Query 171209 CATATGGCAGGTGTAGCAGGTATGTTCGGTGGTAGTCTCTTCAGTGCAATGCACGGTTCT 171268 || || ||| |||| ||| | || || || |||||||| ||||| | ||| Sbjct 8773 CACATCTTAGGCCTAGCTGGTGTAAAAGGCGGCTCCCTATTCAGTGCTATGCATGCTTCC 8832 Query 171269 CTAGTGACATCTTCTCTAATCAGAGAGACAACTGAGAACGAGAGTCAAAACTACGGCTAT 171328 | || || |||| | | ||||| || | ||||| || || | || | || || Sbjct 8833 TTGGTAACTTCTTGTTTGATCAGGGAAAGCACTGAAAATGAATCTGCTAATGAAGGTTAC 8892 Query 171329 AAGTTCGGACAAGAAGAAGAAACATATAACATTGTTGCTGCTCATGGATACTTCGGTAGA 171388 | ||||| ||||| |||||||| || || || || || || |||| || | || || Sbjct 8893 AGATTCGGTCAAGAGGAAGAAACTTAGAATATCGTAGCCGCGCATGCTTATATTGGCCGA 8952 Query 171389 TTAATCTTCCAGTATGCATCATTCAACAACTCTCGTTCATTACACTTCTTC 171439 ||||||||||| ||||| || |||||||||||||| ||||| ||||| Sbjct 8953 TTAATCTTCCAATATGCTAGTTTYAACAACTCTCGTTC-GTACACATCTTC 9002 >seq8364 Length=7890 Score = 114 bits (126), Expect = 1e-20 Identities = 155/210 (74%), Gaps = 7/210 (3%) Strand=Plus/Minus Query 172221 TTTCTAATATATCCATTAGGTCAGCATAGTTGGTTCTTCGCACCTTCATTTGGTGTCGCA 172280 ||||| || |||||| |||||||| | |||||||||| ||| || |||||||| ||| Sbjct 6102 TTTCTGATTTATCCACTAGGTCAGTCTGGTTGGTTCTTTGCAACTAGTTTTGGTGTAGCA 6043 Query 172281 GCAATCTTTCGTTATATTTTATTCATACAGGGTTTCCACAATATAACTCTTAATCCA-TT 172339 || || ||||| | || |||| | || |||||| | ||| || ||| |||| || Sbjct 6042 GCTATATTTCGATTCATCCTATT--TTCAAGGTTTC-ATAATTGGAC-CTTGATCCCCTT 5987 Query 172340 TCATATGATGGGTGTAGCAGGTATACTTGGTGGAGCATTACTATG--TGCCATACATGGT 172397 |||||||||||| || || || ||||| || | || || ||||| |||| |||||| Sbjct 5986 TCATATGATGGGAGTTGCCGGAATACTGGGCGCTGCTTTGCTATGGCCCCCATTCATGGT 5927 Query 172398 GCAACAGTACAGAACACATTGTATGAAGAC 172427 || || ||| | || || || | ||||||| Sbjct 5926 GCTACCGTAGAAAATACTTTATTTGAAGAC 5897 >seq94 Length=189492 Score = 111 bits (122), Expect = 2e-19 Identities = 140/190 (74%), Gaps = 2/190 (1%) Strand=Plus/Minus Query 171428 TTACACTTCTTCCTCGCTGTATTCCCTGTAGTCTGTGTATGGTTAACCTCTATGGGTATC 171487 ||||||||||||| |||| | |||||||| || | ||||| ||| || | |||||| Sbjct 88211 TTACACTTCTTCCGAGCTGCTTGGCCTGTAGTAGGTATCTGGTTTACCGCTTTAGGTATC 88152 Query 171488 TGTACAATGGCATTCAACCTTAACGGATTCAACTTCAACCAATCAGTTGTAGAT-GCAAA 171546 | || ||||| |||||||| || || ||||| ||||||||||| || || ||| | | Sbjct 88151 AGCACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAG 88092 Query 171547 CGGAAAGATTGTACCAACATGGGGAGATGTTCTTAACAGAGCAAACCTTGGAATGGAAGT 171606 | | | || | || |||| ||| | | ||| | || |||||||| |||||||| Sbjct 88091 TGTCATGTAATTAAC-ACTTGGGCCGATATCATCAACCGTGCTAACCTTGGTATGGAAGT 88033 Query 171607 TATGCATGAA 171616 |||||||||| Sbjct 88032 TATGCATGAA 88023 Score = 105 bits (116), Expect = 8e-18 Identities = 139/190 (73%), Gaps = 2/190 (1%) Strand=Plus/Minus Query 171428 TTACACTTCTTCCTCGCTGTATTCCCTGTAGTCTGTGTATGGTTAACCTCTATGGGTATC 171487 ||||||||||||| |||| | |||||||| || | ||||| ||| || | |||||| Sbjct 81682 TTACACTTCTTCCGAGCTGCTTGGCCTGTAGTAGGTATCTGGTTTACCGCTTTAGGTATC 81623 Query 171488 TGTACAATGGCATTCAACCTTAACGGATTCAACTTCAACCAATCAGTTGTAGAT-GCAAA 171546 | || ||||| |||||||| || || ||||| ||||||||||| || || ||| | | Sbjct 81622 AGCACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAG 81563 Query 171547 CGGAAAGATTGTACCAACATGGGGAGATGTTCTTAACAGAGCAAACCTTGGAATGGAAGT 171606 | | | || | || |||| ||| | | ||| | || |||||||| || ||||| Sbjct 81562 TGTCATGTAATTAAC-ACTTGGGCCGATATCATCAACCGTGCTAACCTTGGTATTGAAGT 81504 Query 171607 TATGCATGAA 171616 |||||||||| Sbjct 81503 TATGCATGAA 81494 >seq7295 Length=63598 Score = 107 bits (118), Expect = 2e-18 Identities = 199/291 (68%), Gaps = 1/291 (0%) Strand=Plus/Plus Query 171149 GGTACGTTCAACTTCATGTTCGTGTTCCAAGCAGAACACAACATACTAATGCACCCCTTC 171208 ||||| || || ||| || | | || || || || |||||||| || |||||||| || Sbjct 43838 GGTACTTTGAATTTCCTGATTTTATTTCAGGCTGAGCACAACATCCTTATGCACCCATTT 43897 Query 171209 CATATGGCAGGTGTAGCAGGTATGTTCGGTGGTAGTCTCTTCAGTGCAATGCACGGTTCT 171268 || || ||| |||| ||| | ||||| || |||||||| ||||| ||| Sbjct 43898 CACATCTTAGGCCTAGCTGGTGTAAAAGGTGGATCCCTATTCAGTGCTATGCATAATTCC 43957 Query 171269 CTAGTGACATCTTCTCTAATCAGAGAGACAACTGAGAACGAGAGTCAAAACTACGGCTAT 171328 | || || ||| | | || || || | || | || || | || | || || Sbjct 43958 TTGGTAACTTCTAGTTTTATTAGGGAAAGCACAAAAAATGAATCTGCTAATGAAGGTTAA 44017 Query 171329 AAGTTCGGACAAGAAGAAGAAACATATAACATTGTTGCTGCTCATGGATACTTCGGTAGA 171388 | || | |||||||||||||| || || ||||| || ||||||| || || || || Sbjct 44018 ATATTTGTTCAAGAAGAAGAAACTTAGAATATTGTAGCCGCTCATGCTTATTTTGGACGA 44077 Query 171389 TTAATCTTCCAGTATGCATCATTCAACAACTCTCGTTCATTACACTTCTTC 171439 || ||||| || ||||| ||||||||||||| |||| ||||| ||||| Sbjct 44078 TTGATCTTACAATATGCTAGTTTCAACAACTCTCATTCA-TACACATCTTC 44127 >seq8506 Length=47589 Score = 102 bits (112), Expect = 9e-17 Identities = 76/89 (85%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 171119 TTCTCTGATGGTATGCCACTAGGTATCTCAGGTACGTTCAACTTCATGTTCGTGTTCCAA 171178 || |||||||||||||| ||||| ||||| ||||| ||||| |||||| | || |||||| Sbjct 40168 TTTTCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAATTTCATGATTGTATTCCAA 40109 Query 171179 GCAGAACACAACATACTAATGCACCCCTT 171207 || ||||||||||| || |||||||| || Sbjct 40108 GCTGAACACAACATCCTTATGCACCCATT 40080 >seq24164 Length=10202 Score = 91.5 bits (100), Expect = 2e-13 Identities = 113/155 (73%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 171101 CCATTCGGTCAGGGTTCATTCTCTGATGGTATGCCACTAGGTATCTCAGGTACGTTCAAC 171160 ||| ||||| | || || ||||||| |||||| ||||| |||| ||||| ||||| Sbjct 3436 CCAATCGGTTAAGGAAGTTTTTCTGATGCTATGCCTCTAGGAGTCTCTGGTACTTTCAAT 3495 Query 171161 TTCATGTTCGTGTTCCAAGCAGAACACAACATACTAATGCACCCCTTCCATATGGCAGGT 171220 |||||| | | ||||| || ||||||||||| || |||||| || |||||| || | Sbjct 3496 TTCATGATTATATTCCAGGCTGAACACAACATCCTTATGCACTTATTTCATATGTTAGAT 3555 Query 171221 GTAGCAGGTATGTTCGGTGGTAGTCTCTTCAGTGC 171255 ||| | | | ||||| || || |||||||| Sbjct 3556 GTATCTAGGGTATTCGGCGGCTCCCTATTCAGTGC 3590 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 569936661194160