Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20arcanum_20[genbank_20GCA_5F000612985.1_202014-03-22] 46,594 sequences; 665,186,956 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq21138 113 4e-20 seq2718 113 4e-20 seq3330 100 3e-16 seq29 95.1 1e-14 seq30 93.3 4e-14 seq1518 87.8 2e-12 seq8314 84.2 2e-11 seq8313 84.2 2e-11 >seq21138 Length=28562 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||| ||||| | ||| | || |||||||| || |||||||| ||| Sbjct 12994 CCACCACGGAGACGGAGCACGAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGCA 13053 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || ||||| |||||||| || ||| | || |||||||||||||| || || Sbjct 13054 AGAGTACGACCATCCTCAAGCTGCTTTCCGGCGAAAATCAAACGCTGCTGGTCTGGGGGA 13113 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||| ||||| ||| || |||| | || | || |||| ||||| | Sbjct 13114 ATCCCTTCCTTGTCCTGGATCTTGGCTTTGACATTGTCGATGGTGTCGGAAGACTCAACC 13173 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | || || || ||||| ||||| ||||| |||||||| Sbjct 13174 TCTAGGGTGATCGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCAT 13220 >seq2718 Length=65933 Score = 113 bits (124), Expect = 4e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 131023 AGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCC 131082 ||||| || || | ||||||||||||||| ||||| || || || ||||| ||| Sbjct 45185 AGCACCAAGTGCAGGGTCGACTCCTTTTGGATGTTATAGTCCGCCAAAGTGCGGCCATCC 45126 Query 131083 TCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCG 131142 || ||||||||||| || | || || | ||||||||| || ||||| || || ||||| Sbjct 45125 TCGAGCTGCTTGCCAGCAAAAATCAACCTCTGCTGGTCTGGGGGGATACCCTCCTTGTCT 45066 Query 131143 GTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTT 131202 ||| || ||||| | || | || |||| | ||| | || | ||| | |||| Sbjct 45065 TGGATCTTGGCCTTGACATTGTCAATGGTGTCGGAGCTCTCAACCTCCAGGGTGATGGTT 45006 Query 131203 TTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || ||||| ||||| || || || |||||||| Sbjct 45005 TTCCCGGTAAGAGTCTTAACAAAGATCTGCAT 44974 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| |||| ||| || || | || | |||||||||||| || |||||||| ||| Sbjct 44972 CCACCACGCAGACGAAGGACAAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGCA 44913 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| ||||| |||||||| || ||| |||| || | ||||||||| || || Sbjct 44912 AGGGTGCGGCCATCCTCGAGCTGCTTACCAGCGAAGATCAACCTCTGCTGGTCTGGGGGA 44853 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 ||||| || ||||| ||| || ||| | | || | || |||| | || | Sbjct 44852 ATTCCCTCCTTGTCCTGGATCTTAGCCTTAACATTATCAATGGTGTCGGAGCTTTCCACC 44793 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | || | || || ||||| || || || || ||||||||||| Sbjct 44792 TCCAAAGTGATAGTCTTTCCGGTGAGGGTCTTAACAAAAATCTGCAT 44746 Score = 98.7 bits (108), Expect = 9e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATC-GCT 131066 ||||| || | ||| ||||| ||||| | ||| |||||||| || ||||||||||| ||| Sbjct 44288 CCACCACGTAGACGGAGCACCAAATGGAGGGTAGACTCCTTCTGGATGTTGTAATCAGCT 44229 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | || || |||||| | |||||| || ||| |||| | | ||||| ||||| || Sbjct 44228 -AGAGTACGTCCGTCCTCCAACTGCTTTCCGGCGAAGATCAGCCTTTGCTGATCCGGGGG 44170 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 || ||||| ||||| ||| || ||| | | || | ||||| | || | Sbjct 44169 AATCCCTTCCTTGTCCTGGATCTTAGCCTTAACGTTGTCGATTGTATCAGAACTTTCCAC 44110 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | || || ||||| |||||||| || || |||||||| Sbjct 44109 CTCTAGGGTGATAGTCTTTCCGGTGAGAGTTTTCACAAAGATCTGCAT 44062 >seq3330 Length=13059 Score = 100 bits (110), Expect = 3e-16 Identities = 150/209 (72%), Gaps = 3/209 (1%) Strand=Plus/Minus Query 131023 AGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCC 131082 ||||||| ||||| || || | || || ||| |||| | || |||||| ||| Sbjct 4001 AGCACTAGATGTAGAGTTGATTTTTTCTGGATGCTGTAGTACACCAAGGTGCGTCCATCC 3942 Query 131083 TCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCG 131142 || |||||||| || || | || | | |||||||| |||||||||||||||||||| Sbjct 3941 TCGAGCTGCTTACCAGCAAAAATCAGCCTTTGCTGGTCTGGAGGGATTCCTTCTTTGTC- 3883 Query 131143 GTGATTTTCTGCTTGAGC-TGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGT 131201 || | | || | ||| | ||| | ||||| | || | |||| || | |||| ||| Sbjct 3882 TTGTATCTTGGCCTTAGCATTCTCGATAGTATTGCTGAATTCGACTTCCAGAGTAATGGT 3823 Query 131202 TTTACCGGTTAGAGTTTTTACGAAAATCT 131230 ||||| || ||||||||| ||||| |||| Sbjct 3822 TTTACTGG-TAGAGTTTTCACGAATATCT 3795 >seq29 Length=28306 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||| ||||| || || | ||| || ||||| || ||||||||||| Sbjct 28168 CCACCACGWAGACGTAGCACCAAGTGAAGGGTTGATTCCTTCTGGATGTTGTAATCAGCA 28109 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||| | |||||| ||||||||||| || |||| || | |||||||| || || Sbjct 28108 AGGGTCCTGCCGTCCTCAAGCTGCTTGCCCGCAAAGATCAACCTTTGCTGGTCTGGGGGA 28049 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||| ||||| ||| || ||| | | || | || || | | || | Sbjct 28048 ATGCCTTCCTTGTCTTGGATCTTAGCCTTAACATTGTCAATGGTGTCAGAGCTTTCAACC 27989 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | ||| || || || | |||||| |||||||| ||||| Sbjct 27988 TCAAGGGTGATGGTCTTTCCTGTCAAAGTTTTCACGAAAATTTGCAT 27942 Score = 87.8 bits (96), Expect = 2e-12 Identities = 102/135 (76%), Gaps = 2/135 (1%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATC-GCT 131066 ||||| || | ||| ||||| || || | || |||||||| |||||||||||||| ||| Sbjct 27940 CCACCACGAAGACGGAGCACCAAGTGGAGAGTTGACTCCTTCTGAATGTTGTAATCAGCT 27881 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | || || ||| || |||||||| ||||| |||| | | ||||||||| || || Sbjct 27880 -AGAGTACGGCCGTCTTCAAGCTGCTTTCCTGCAAAGATCAGCCTCTGCTGGTCTGGGGG 27822 Query 131127 GATTCCTTCTTTGTC 131141 || ||||| ||||| Sbjct 27821 AATGCCTTCCTTGTC 27807 >seq30 Length=32432 Score = 93.3 bits (102), Expect = 4e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | |||||| || || || | ||| |||||||| || ||||||||||| Sbjct 212 CCACCTCGGAGACGCAGGACCAAGTGAAGGGTTGACTCCTTCTGGATGTTGTAATCAGCA 153 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||| || |||||| || ||||| || || |||| || | |||||||| ||||| Sbjct 152 AGGGTACGGCCGTCCTCAAGTTGCTTTCCGGCAAAGATCAACCTTTGCTGGTCTGGAGGA 93 Query 131128 ATTCCTTCTTTGTC 131141 || ||||||||||| Sbjct 92 ATACCTTCTTTGTC 79 >seq1518 Length=20725 Score = 87.8 bits (96), Expect = 2e-12 Identities = 139/193 (72%), Gaps = 5/193 (3%) Strand=Plus/Minus Query 131045 CCTTT-TGAATGTTGTAATC-GCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTA 131102 ||||| |||||||||||||| ||| | || || || || |||||||| || ||| | Sbjct 13845 CCTTTCTGAATGTTGTAATCAGCT-AGAGTACGTCCATCTTCGAGCTGCTTTCCGGCGAA 13787 Query 131103 GATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGC-TTGAGCT 131161 ||| || ||||||||||| || || || ||||| ||||| ||| | | || |||| | Sbjct 13786 GATCAATCGCTGCTGGTCTGGTGGAATACCTTCCTTGTC-TTGAATCTTAGCTTTGACAT 13728 Query 131162 GCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTA 131221 || | ||| ||| | || || | || | || | || || || || |||||||| | Sbjct 13727 TGTCAATAGTGTCGCTCGATTCAACTTCAAGCGTGATCGTCTTCCCCGTAAGAGTTTTCA 13668 Query 131222 CGAAAATCTGCAT 131234 |||| |||||||| Sbjct 13667 CGAAGATCTGCAT 13655 >seq8314 Length=67656 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATC-GCT 131066 ||||| || | ||| || || | || | ||| |||||||| || |||||||| || ||| Sbjct 25995 CCACCACGGAGACGGAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCT 25936 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | | || | ||||| |||||||| || ||| | || || ||||||||||| || || Sbjct 25935 AGCGTTCGGCCA-TCCTCGAGCTGCTTACCGGCGAAAATCAATCGCTGCTGGTCTGGTGG 25877 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 || ||||| ||||| || || ||| | | || | || || | ||||| | Sbjct 25876 AATGCCTTCCTTGTCTTGAATCTTAGCCTTAACATTGTCAATGGTGTCTGATGACTCTAC 25817 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||||| || || || || || || || || || |||||||| Sbjct 25816 CTCCAAGGTAATAGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 25769 >seq8313 Length=21892 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATC-GCT 131066 ||||| || | ||| || || | || | ||| || ||||| || |||||||| || ||| Sbjct 1316 CCACCACGGAGACGAAGGACAAGGTGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGCT 1375 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | | || | ||||| |||||||| || ||| | || || ||||||||||| || || Sbjct 1376 AGCGTTCGGCCA-TCCTCAAGCTGCTTTCCCGCGAAAATCAACCGCTGCTGGTCTGGTGG 1434 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 || ||||| ||||| || || ||| | | || | || || | ||||| | Sbjct 1435 AATGCCTTCCTTGTCCTGAATCTTAGCCTTAACATTGTCAATGGTGTCCGATGACTCTAC 1494 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||||| || || || ||||| || || || || |||||||| Sbjct 1495 CTCTAAGGTAATAGTCTTGCCCGTTAGGGTCTTCACAAAGATCTGCAT 1542 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471737887944960