Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20arcanum_20[genbank_20GCA_5F000612985.1_202014-03-22] 46,594 sequences; 665,186,956 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq30 113 4e-20 seq21138 100 2e-16 seq11273 100 2e-16 seq2718 86.0 5e-12 >seq30 Length=32432 Score = 113 bits (124), Expect = 4e-20 Identities = 164/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||| || || ||||| ||||| || || | || || | || ||||| || Sbjct 213 AATGCAAATCTTCGTGAAGACCTTGACTGGCAAGACTATTACCCTTGAGGTGGAAAGCTC 272 Query 25058 TGACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 ||||| || || | ||| | || | ||| |||||||| || || ||||| |||| Sbjct 273 CGACACCATTGACAACGTAAAGGCCAAGATTCAG-GACAAAGAGGGTATCCCACCAGACC 331 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 | || || | |||||||| ||||| || || ||||||| | || | | |||||||| Sbjct 332 AGCAAAGGTTGATTTTTGCTGGCAAGCAGTTGGAAGATGGAAGGACATTAGCCGATTACA 391 Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 ||||||| || ||||| || || ||| | ||| | ||||| || ||||| Sbjct 392 ATATTCAGAAGGAATCAACCCTTCATCTTGTGTTGAGGCTCAGGGGAGG 440 Score = 82.4 bits (90), Expect = 7e-11 Identities = 150/217 (69%), Gaps = 6/217 (3%) Strand=Plus/Plus Query 25014 AAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCTGACACTATCGAGTCA 25073 ||||| ||||| || || | ||||| | || ||||| |||||||| || || || Sbjct 1 AAGACCTTGACTGGCAAGACAATCACCCTTGAGGTGGAAAGTTCTGACACCATTGA--CA 58 Query 25074 CTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATT 25130 || | || |||| ||| ||||||||||| ||||| || ||||| || || | || Sbjct 59 ATGTTAAGGCCAAAATTCAG-GACAAAGAAGGTATTCCTCCAGACCAGCAAAGGTTGATC 117 Query 25131 TTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAATATTCAAAAAGAA 25190 |||||||| || ||| | || || | || || | | |||||||| || || || || Sbjct 118 TTTGCCGGAAAGCAACTTGAGGACGGCCGTACCCTTGCTGATTACAACATCCAGAAGGAG 177 Query 25191 TCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 || || || || || || || | || |||| |||| Sbjct 178 TCAACCCTTCACTTGGTCCTGCGTCTCCGAGGTGGAA 214 >seq21138 Length=28562 Score = 100 bits (110), Expect = 2e-16 Identities = 153/215 (71%), Gaps = 6/215 (3%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || || || | || || || | ||||| | || || ||||| || Sbjct 13220 ATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACGATCACCCTAGAGGTTGAGTCTTCC 13161 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 ||||| ||||| || || |||| || | || ||||| ||||||||||| || ||| Sbjct 13160 GACACCATCGA--CAATGTCAAAGCCAAGATCCAG-GACAAGGAAGGGATTCCCCCAGAC 13104 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || ||||| | ||||| ||||| || || | || |||| ||| ||| | | ||| ||| Sbjct 13103 CAGCAGCGTTTGATTTTCGCCGGAAAGCAGCTTGAGGATGGTCGTACTCTTGCCGACTAC 13044 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || || || || ||||| || ||| | ||||| Sbjct 13043 AACATCCAGAAGGAGTCCACTCTCCATCTCGTGCT 13009 >seq11273 Length=79338 Score = 100 bits (110), Expect = 2e-16 Identities = 162/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||||||||| ||||| ||||| || || | || || | || || ||| || Sbjct 31964 ATGCAAATATTTGTCAAGACATTGACAGGGAAGACAATTACTTTGGAGGTTGAGAGTTCA 32023 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 || |||||||| || || |||| ||| ||| ||||| || || ||||| || ||| Sbjct 32024 GATACTATCGA--CAATGTTAAAGC-AAAGATCCAAGACAAGGAGGGTATTCCTCCAGAC 32080 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || ||| | | || ||||| || || ||| | || |||| | || ||| |||||| Sbjct 32081 CAGCAGAGATTGATCTTTGCTGGAAAGCAACTTGAGGATGGAAGGACGTTGGCAGATTAC 32140 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || ||||| |||||||| || || || | || || | || ||||| || Sbjct 32141 AACATTCAGAAAGAATCAACCCTGCACCTTGTTCTTCGCCTTAGAGGTGG 32190 Score = 100 bits (110), Expect = 2e-16 Identities = 162/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||||||||| || || | |||||| | || || ||| || Sbjct 32420 ATGCAGATCTTTGTGAAGACTTTGACTGGGAAGACAATCACATTGGAGGTTGAGAGTTCA 32479 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 || || || || || || ||||||| | ||| ||||| || || ||||| || ||| Sbjct 32480 GATACCATTGA--CAATGTGAAAGCAAAGATTCA-AGACAAGGAGGGTATTCCCCCAGAC 32536 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 |||||||| | || ||||| || |||||| | || |||| | ||| | | || ||| Sbjct 32537 CAACAGCGTTTGATCTTTGCTGGTAAACAACTTGAGGATGGGAGGACTCTTGCAGACTAC 32596 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || || || || || || || || ||| | ||| | | | |||||||| Sbjct 32597 AACATCCAGAAGGAGTCAACTCTCCATCTGGTGTTGCGTTTGAGAGGAGG 32646 Score = 98.7 bits (108), Expect = 9e-16 Identities = 151/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| | || || || ||||||| | ||||| || || Sbjct 31736 ATGCAGATCTTTGTCAAGACACTTACTGGAAAGACCATCACCCTTGAAGTTGAAAGTTCC 31795 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 || ||||| || ||||| | |||| ||| || || ||||||||||| || ||||| Sbjct 31796 GATACTATTGACAACGTGAAGGCCAAAATTCAG-GATAAGGAAGGGATTCCTCCAGACCA 31854 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||| | | || ||||||||||| ||| | || |||| | || ||| || ||||| Sbjct 31855 GCAGAGACTGATCTTTGCCGGCAAGCAACTCGAGGATGGAAGGACCCTGGCTGACTACAA 31914 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 |||||| ||||| || || ||||| | || || Sbjct 31915 TATTCAGAAAGAGTCTACCTTACATCTTGTTCT 31947 Score = 96.9 bits (106), Expect = 3e-15 Identities = 161/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| ||||| ||||||||||| || || | || ||| | || || ||| || Sbjct 32192 ATGCAAATTTTTGTCAAGACTTTGACTGGGAAGACAATTACATTGGAGGTTGAGAGTTCA 32251 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 || || || || || || ||||||| | ||| ||||| || || ||||| || ||| Sbjct 32252 GATACCATTGA--CAATGTGAAAGCAAAGATTCA-AGACAAGGAGGGTATTCCCCCAGAC 32308 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 |||||||| | || ||||| || |||||| | || || | | ||| | | || ||| Sbjct 32309 CAACAGCGTTTGATCTTTGCTGGTAAACAACTTGAGGACGGGAGGACTCTTGCAGACTAC 32368 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || || || || || || || || ||| | ||| | | | |||||||| Sbjct 32369 AACATCCAGAAGGAGTCAACTCTCCATCTGGTGTTGCGTTTGAGAGGAGG 32418 Score = 87.8 bits (96), Expect = 2e-12 Identities = 160/230 (70%), Gaps = 7/230 (3%) Strand=Plus/Minus Query 25000 TGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCTG 25059 ||||||||||||| ||||| ||||| || || | || || | || || ||| || | Sbjct 22425 TGCAAATATTTGTTAAGACATTGACAGGGAAGACAATTACTTTGGAGGTTGAGAGTTCAG 22366 Query 25060 ACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGG-ATTCCACCTGAC 25115 | |||||| | || || |||| ||| ||| ||||||| |||| ||||| || || Sbjct 22365 ATACTATCAA--CAATGTTAAAGC-AAAGATCCAAGACAAAGGAGGGTATTCCTCCAAAC 22309 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || ||| | | || ||||| || | ||| | ||||||| | || ||| |||||| Sbjct 22308 CAGCAGAGATTGATATTTGCTGGAGAGCAACTTGAAGATGGAAGGACCTTGGCAGATTAC 22249 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || ||||| ||| | || || || || | || ||| | || ||||| || Sbjct 22248 AACATTCAGAAACAGTCAACCCTGCACGTTGTTCTACGTCTTAGAGGTGG 22199 >seq2718 Length=65933 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| || ||| | ||||| || | ||||| | || ||||| ||| Sbjct 44062 ATGCAGATCTTTGTGAAAACTCTCACCGGAAAGACTATCACCCTAGAGGTGGAAAGTTCT 44121 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 || || ||||| | ||| || ||| ||||| ||||||||||| || || || Sbjct 44122 GATACAATCGACAACGTTAAGGCTAAGATCCAGGACAAGGAAGGGATTCCCCCGGATCAG 44181 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 || || | || || ||||| || || || || || | || ||| | | |||||||| Sbjct 44182 CAAAGGCTGATCTTCGCCGGAAAGCAGTTGGAGGACGGACGTACTCTAGCTGATTACAAC 44241 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || || || || || || ||||| ||||| Sbjct 44242 ATCCAGAAGGAGTCTACCCTCCATTTGGTGCT 44273 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433081928466110