Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20arcanum_20[genbank_20GCA_5F000612985.1_202014-03-22] 46,594 sequences; 665,186,956 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq4177 214 2e-50 seq5179 89.7 6e-13 seq12842 87.8 2e-12 seq3759 87.8 2e-12 seq5244 86.0 7e-12 seq3704 84.2 2e-11 seq2544 84.2 2e-11 seq14932 82.4 8e-11 seq12534 82.4 8e-11 seq8531 82.4 8e-11 seq7946 82.4 8e-11 seq1519 82.4 8e-11 >seq4177 Length=96264 Score = 214 bits (236), Expect = 2e-50 Identities = 594/895 (66%), Gaps = 17/895 (2%) Strand=Plus/Minus Query 92802 TTTTTGGTATTCCCCAACttttttttCAAAGAAATTTGTCTTTCCTTCCAAAGATATCGA 92861 ||| || || ||||||||| | || ||||||||||| ||||| |||| ||| ||| Sbjct 67253 TTTCTGATACTCCCCAACTCTCTTCTCAAAGAAATTAGTCTTCCCTTGTAAACTAATCAG 67194 Query 92862 ATTCA--CTAGTGATTGGATTCTTGGCGTTATAATACTTTTCACCGATCAACTCGTACAA 92919 | || | | | |||||||| || || || ||| ||| ||| | | ||| Sbjct 67193 CTCCATCCAATCAAATGGATTCTGAGCATTGTACATCTTGTCATAACCCAAAGCATCCAA 67134 Query 92920 TAATCTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAGAAG 92979 ||||| ||||||||||| |||||||| | | ||||||||| | ||||||||| | || Sbjct 67133 CAATCTGTCAGCTACAAACTCTATGTATTTACTCATCAAATCTCCATTCATTCCCACCAG 67074 Query 92980 ACGTACA-GGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAAGA 93038 | | ||| || ||||| || || ||| || | || || | || || ||| | | Sbjct 67073 A-GCACAAGGAAGAGCATCACACACGAACTCCCTTTCTATCTCCACAGCATCTGCAACAA 67015 Query 93039 TTTCTATTACTCTACTATTTGGTGGTTTTTGTACG--ACATAATTGTACATTAAGCACGC 93096 || | | |||| || | || || || | ||| || |||| | || ||||| Sbjct 67014 TTCCCCTGACTCG-CTCCTCAGTTAGCTTCGTCCTTAACA-AACTGTAAAGCAAACACGC 66957 Query 93097 AAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGG 93156 ||| || || ||||||||||||| ||| || |||||||| ||| ||||| || || Sbjct 66956 AAAATCACAGTGCAAACCTTCGTCTCTTGAAATTAACTCATTTGAGAAGGTTAATCCAGG 66897 Query 93157 TAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACC 93216 | | || ||||| || | ||||||||| ||| || || || || || || || Sbjct 66896 CATTAACCCCCGTTTTTTCAACCAAAATATCGAACAGAAGCTTCCGCTGAAGAAAATCCC 66837 Query 93217 TTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGATCCA 93276 ||| || ||||| ||||| | ||| || || ||| || | || | | ||||| Sbjct 66836 TTCAACACAAGCAAAAGCCACCAAACGCTCCGCGAAAGTTTCAGACCCATCG---ATCCA 66780 Query 93277 TTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAG 93336 | ||||| | || || || | || |||||| | ||| || || || || | Sbjct 66779 ACGAAGGGCCCATTTCGCCTTCTTTTCAACACAAGGGATTGTCTCAATTGCACGGAACAA 66720 Query 93337 GTAATCTCGCT-CGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAG 93395 | ||| | |||| ||||| ||||| | || | | || | ||||| || | Sbjct 66719 TTTG-CTCTTTTCGTCAGAATCCTTGATGTACGACTCCAACAGCAAACTGTACATCTCGG 66661 Query 93396 AATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCA 93455 |||||| |||||| || || |||||||| || |||||| | ||| || | | ||| | Sbjct 66660 AATGGATATTCTCAATGGCGATTTGGAACCCATAGAAAGCACGAGCCTCGGCAACCTGGA 66601 Query 93456 CTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaa 93515 | |||| || || | |||| || || ||||| || || || || ||||||| Sbjct 66600 CATCTTTCATGAACCTTCCAGCGAGGTTCTCTAAAACTATGCCGTCTGAGGCGGCAAAAA 66541 Query 93516 aaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTATCCCAATCGGATA 93575 | || | | ||| | || ||||| | ||| | | | || || ||||| | | | Sbjct 66540 AGGCAAGAACATGAGTGATGAAATGCCTTTCACCGGATGTTAGGTTTTCCCAGT-GACGA 66482 Query 93576 G-ATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTAC 93634 | ||| | || |||||||||||||| || ||||| || ||||| ||||| |||||| Sbjct 66481 GTATCGGTGGAGAGATCGACTTCTTCTACCGTCCAGAAAGATGCCATGGCTTTCTTGTAC 66422 Query 93635 ATATCCCATATGTCTTGATATTGAATTGGAAATATGACA-AAACGATTAGGGTTA 93688 || ||||| || | | |||| |||||||| || || ||| || |||| |||||| Sbjct 66421 ATCTCCCAAATCTGTGGATACTGAATTGGGAACAT-ACAGAATCGATCTGGGTTA 66368 >seq5179 Length=41075 Score = 89.7 bits (98), Expect = 6e-13 Identities = 85/107 (79%), Gaps = 5/107 (5%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGC 126322 ||||||| ||||||||||||||||||||||||| | ||| |||||||| | | |||| Sbjct 36059 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTTCTCGTAAGAGAGC 36118 Query 126323 GTGGGTTCGAACCCCACACCTGACAAATTATTATTGGAATTTTTGTT 126369 |||||||| || ||||| |||||| | || || ||||||| || Sbjct 36119 GTGGGTTCAAATCCCACTTCTGACA---TTTTTTTTAAATTTTTTTT 36162 >seq12842 Length=49521 Score = 87.8 bits (96), Expect = 2e-12 Identities = 76/93 (82%), Gaps = 6/93 (6%) Strand=Plus/Minus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA----G 126321 |||||| ||||||||||||||||||||||||| | ||| |||||| ||||| || | Sbjct 28119 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGTGAGAGGG 28062 Query 126322 CGTGGGTTCGAACCCCACACCTGACAAATTATT 126354 ||||||||| || ||||| ||||||| || || Sbjct 28061 CGTGGGTTCAAATCCCACTTCTGACAATTTTTT 28029 >seq3759 Length=35049 Score = 87.8 bits (96), Expect = 2e-12 Identities = 74/90 (82%), Gaps = 2/90 (2%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGT 126324 || ||| |||||||||||||||||||||||||||||| | |||||| || | |||| Sbjct 13237 AGACAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGT 13294 Query 126325 GGGTTCGAACCCCACACCTGACAAATTATT 126354 |||||| || |||||| ||| |||||| || Sbjct 13295 GGGTTCAAATCCCACAGCTGTCAAATTTTT 13324 >seq5244 Length=12122 Score = 86.0 bits (94), Expect = 7e-12 Identities = 85/107 (79%), Gaps = 5/107 (5%) Strand=Plus/Minus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGG--TTCCCTCGGGAGCG 126323 |||||| ||||||||||||||||||||||||| | ||| ||||| ||| | | ||| Sbjct 8261 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCTTCGTAAGAGGGCG 8202 Query 126324 TGGGTTCGAACCCCACACCTGACAA-ATTATTATTGGAATTTTTGTT 126369 ||||||| || ||||| ||||||| |||||| || |||||| || Sbjct 8201 TGGGTTCAAATCCCACTTCTGACAATATTATTTTT--TATTTTTTTT 8157 >seq3704 Length=18604 Score = 84.2 bits (92), Expect = 2e-11 Identities = 82/104 (79%), Gaps = 4/104 (4%) Strand=Plus/Plus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327 ||| |||||||||||||||||||||||||||||| | |||||| || | ||||||| Sbjct 9011 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGTGGG 9068 Query 126328 TTCGAACCCCACACCTGACAAATTAT--TATTGGAATTTTTGTT 126369 ||| || |||||| ||| || |||| ||| ||||||| || Sbjct 9069 TTCAAATCCCACAGCTGTCATTTTATCCAATTTTAATTTTTTTT 9112 >seq2544 Length=36689 Score = 84.2 bits (92), Expect = 2e-11 Identities = 73/90 (81%), Gaps = 2/90 (2%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGT 126324 || ||| |||||||||||||||||||||||||||||| | |||||| || | |||| Sbjct 34367 AGACAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGT 34424 Query 126325 GGGTTCGAACCCCACACCTGACAAATTATT 126354 |||||| || |||||| ||| ||| || || Sbjct 34425 GGGTTCAAATCCCACAGCTGTCAATTTTTT 34454 >seq14932 Length=42992 Score = 82.4 bits (90), Expect = 8e-11 Identities = 78/99 (79%), Gaps = 2/99 (2%) Strand=Plus/Minus Query 126254 CTTCTATTTACAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGG--TT 126311 |||| || | ||||||| ||||||||||||||||||||||||| | ||| ||||| || Sbjct 39794 CTTCAATATCAAGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCTT 39735 Query 126312 CCCTCGGGAGCGTGGGTTCGAACCCCACACCTGACAAAT 126350 | | | |||||||||| || ||||| |||||| || Sbjct 39734 CGTAAGAGGGCGTGGGTTCAAATCCCACTTCTGACATAT 39696 >seq12534 Length=52284 Score = 82.4 bits (90), Expect = 8e-11 Identities = 71/87 (82%), Gaps = 2/87 (2%) Strand=Plus/Plus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327 ||| |||||||||||||||||||||||||||||| | |||||| || | ||||||| Sbjct 43006 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGTGGG 43063 Query 126328 TTCGAACCCCACACCTGACAAATTATT 126354 ||| || |||||| ||| ||| || || Sbjct 43064 TTCAAATCCCACAGCTGTCAATTTTTT 43090 >seq8531 Length=39485 Score = 82.4 bits (90), Expect = 8e-11 Identities = 79/99 (80%), Gaps = 3/99 (3%) Strand=Plus/Minus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327 ||| |||||||||||||||||||||||||||||| | |||||| || | ||||||| Sbjct 17065 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGTGGG 17008 Query 126328 TTCGAACCCCACACCTGACAA-ATTATTATTGGAATTTT 126365 ||| || |||||| ||| ||| | | || || || |||| Sbjct 17007 TTCAAATCCCACAGCTGTCAATAATTTTTTTCGATTTTT 16969 >seq7946 Length=27968 Score = 82.4 bits (90), Expect = 8e-11 Identities = 74/91 (81%), Gaps = 3/91 (3%) Strand=Plus/Plus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGG--TTCCCTCGGGAGCG 126323 |||||| ||||||||||||||||||||||||| | ||| ||||| ||| | | ||| Sbjct 2916 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCTTCGTAAGAGGGCG 2975 Query 126324 TGGGTTCGAACCCCACACCTGACAAATTATT 126354 ||||||| || ||||| ||||| ||||||| Sbjct 2976 TGGGTTCAAATCCCACTTCTGAC-AATTATT 3005 >seq1519 Length=7109 Score = 82.4 bits (90), Expect = 8e-11 Identities = 78/98 (80%), Gaps = 4/98 (4%) Strand=Plus/Minus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327 ||| |||||||||||||||||||||||||||||| | |||||| || | ||||||| Sbjct 1044 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGTGGG 987 Query 126328 TTCGAACCCCACACCTGACAAATTATTATTGGAATTTT 126365 ||| || |||||| ||| | ||| ||||| | |||| Sbjct 986 TTCAAATCCCACAGCTGTC--ATTTTTATTTCATTTTT 951 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556536470348560