Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20arcanum_20[genbank_20GCA_5F000612985.1_202014-03-22] 46,594 sequences; 665,186,956 total letters Query= NC_008725.1 Length=111953 Score E Sequences producing significant alignments: (Bits) Value seq11273 96.9 2e-15 seq30 96.9 2e-15 >seq11273 Length=79338 Score = 96.9 bits (106), Expect = 2e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||||||| | || ||||| || || || || ||||| |||| || || Sbjct 31964 ATGCAAATATTTGTCAAGACATTGACAGGGAAGACAATTACTTTGGAGGTTGAGAGTTCA 32023 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | | || |||| ||| || || || |||||| | ||| | |||| Sbjct 32024 GATACTATCGACAATGTTAAAGCAAAGATCCAAGACAAGGAGGGTATTCCTCCAGACCAG 32083 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 |||||| | ||||||||||| || ||||| || ||| || || |||| |||||||| Sbjct 32084 CAGAGATTGATCTTTGCTGGAAAGCAACTTGAGGATGGAAGGACGTTGGCAGATTACAAC 32143 Query 22014 ATTCAGAAGGAATCTACTCTTCA 22036 |||||||| ||||| || || || Sbjct 32144 ATTCAGAAAGAATCAACCCTGCA 32166 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||| ||| | || || || || || || || ||||| |||| || || Sbjct 32192 ATGCAAATTTTTGTCAAGACTTTGACTGGGAAGACAATTACATTGGAGGTTGAGAGTTCA 32251 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | | || | || ||| ||| || || |||||| | || | ||||| Sbjct 32252 GATACCATTGACAATGTGAAAGCAAAGATTCAAGACAAGGAGGGTATTCCCCCAGACCAA 32311 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 ||| | | ||||||||||| |||||||| || || | ||| | || || ||||| Sbjct 32312 CAGCGTTTGATCTTTGCTGGTAAACAACTTGAGGACGGGAGGACTCTTGCAGACTACAAC 32371 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 || |||||||| || ||||| ||| |||| || ||||| ||||||| Sbjct 32372 ATCCAGAAGGAGTCAACTCTCCATCTGGTGTTGCGTTTGAGAGGAGG 32418 Score = 89.7 bits (98), Expect = 4e-13 Identities = 110/149 (74%), Gaps = 1/149 (1%) Strand=Plus/Plus Query 21912 AAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAACAGAGACTTATCTTTGCT 21971 ||||||| | || || || |||||| | || | |||||||| | | ||||||||| Sbjct 32499 AAGCAAAGA-TTCAAGACAAGGAGGGTATTCCCCCAGACCAACAGCGTTTGATCTTTGCT 32557 Query 21972 GGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACT 22031 || |||||||| || ||| | ||| | || || ||||| || |||||||| || ||| Sbjct 32558 GGTAAACAACTTGAGGATGGGAGGACTCTTGCAGACTACAACATCCAGAAGGAGTCAACT 32617 Query 22032 CTTCATATGGTATTACGTTTACGAGGAGG 22060 || ||| |||| || ||||| ||||||| Sbjct 32618 CTCCATCTGGTGTTGCGTTTGAGAGGAGG 32646 Score = 86.0 bits (94), Expect = 4e-12 Identities = 156/227 (69%), Gaps = 1/227 (0%) Strand=Plus/Minus Query 21835 TGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCAG 21894 ||||||||||| |||| ||||| || || || || ||||| |||| || ||| Sbjct 22425 TGCAAATATTTGTTAAGACATTGACAGGGAAGACAATTACTTTGGAGGTTGAGAGTTCAG 22366 Query 21895 AAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAA-GAGGGTGTACCTGTAAACCAA 21953 | || | | || |||| ||| || || ||| |||||| | ||| |||||| Sbjct 22365 ATACTATCAACAATGTTAAAGCAAAGATCCAAGACAAAGGAGGGTATTCCTCCAAACCAG 22306 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 |||||| | || |||||||| | ||||| |||||| || || |||| |||||||| Sbjct 22305 CAGAGATTGATATTTGCTGGAGAGCAACTTGAAGATGGAAGGACCTTGGCAGATTACAAC 22246 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 |||||||| | || || || || | || ||||| | |||| || Sbjct 22245 ATTCAGAAACAGTCAACCCTGCACGTTGTTCTACGTCTTAGAGGTGG 22199 Score = 86.0 bits (94), Expect = 4e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||| || ||| | || ||| | || || || ||||| ||| | ||| ||| | Sbjct 31736 ATGCAGATCTTTGTCAAGACACTTACTGGAAAGACCATCACCCTTGAAGTTGAAAGTTCC 31795 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | | | | ||| |||||| ||||| || || | ||| | |||| Sbjct 31796 GATACTATTGACAACGTGAAGGCCAAAATTCAGGATAAGGAAGGGATTCCTCCAGACCAG 31855 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 |||||||| |||||||| ||||| ||||| || ||| || || |||| || |||||| Sbjct 31856 CAGAGACTGATCTTTGCCGGCAAGCAACTCGAGGATGGAAGGACCCTGGCTGACTACAAT 31915 Query 22014 ATTCAGAAGGAATCTAC 22030 |||||||| || ||||| Sbjct 31916 ATTCAGAAAGAGTCTAC 31932 >seq30 Length=32432 Score = 96.9 bits (106), Expect = 2e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 21833 AATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGC 21892 ||||||||| || | || || || || ||||| || |||||| | || |||| | | Sbjct 213 AATGCAAATCTTCGTGAAGACCTTGACTGGCAAGACTATTACCCTTGAGGTGGAAAGCTC 272 Query 21893 AGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCA 21952 || || | | | | | ||| || ||| || ||||||||| | || | |||| Sbjct 273 CGACACCATTGACAACGTAAAGGCCAAGATTCAGGACAAAGAGGGTATCCCACCAGACCA 332 Query 21953 ACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAA 22012 || || | || ||||||||||| || | |||||| || || | ||||||||||| Sbjct 333 GCAAAGGTTGATTTTTGCTGGCAAGCAGTTGGAAGATGGAAGGACATTAGCCGATTACAA 392 Query 22013 TATTCAGAAGGAATCTACTCTTCATATGGTATT 22045 ||||||||||||||| || |||||| | || || Sbjct 393 TATTCAGAAGGAATCAACCCTTCATCTTGTGTT 425 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357921433684276