Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20arcanum_20[genbank_20GCA_5F000612985.1_202014-03-22] 46,594 sequences; 665,186,956 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq1518 143 6e-29 seq11273 136 9e-27 seq21138 132 1e-25 seq2718 125 2e-23 seq3191 104 6e-17 seq29 100 7e-16 seq315 84.2 5e-11 >seq1518 Length=20725 Score = 143 bits (158), Expect = 6e-29 Identities = 148/194 (76%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 288284 CTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGA 288343 |||| || || || || || || || || ||||| ||||| | || ||||| ||||||| Sbjct 13844 CTTTCTGAATGTTGTAATCAGCTAGAGTACGTCCATCTTCGAGCTGCTTTCCGGCGAAGA 13785 Query 288344 TCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTT 288403 ||| ||||| || ||| || ||||| || || || || || ||||| || || | Sbjct 13784 TCAATCGCTGCTGGTCTGGTGGAATACCTTCCTTGTCTTGAATCTTAGCTTTGACATTGT 13725 Query 288404 CTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGA 288463 | |||| ||||||||||| ||||| ||||||||||||||||| || ||||| || |||| Sbjct 13724 CAATAGTGTCGCTCGATTCAACTTCAAGCGTGATCGTCTTCCCCGTAAGAGTTTTCACGA 13665 Query 288464 ATATCTGCATTATG 288477 | ||||||||| || Sbjct 13664 AGATCTGCATTTTG 13651 >seq11273 Length=79338 Score = 136 bits (150), Expect = 9e-27 Identities = 169/230 (73%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 || || ||||| || || || ||||||| || ||||| ||||| |||||||| || Sbjct 32874 CCGCCACGGAGCCTCAGGACAAGATGAAGAGTAGACTCTTTCTGGATGTTATAGTCTGCA 32815 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| || || || | || || || || ||||| || | ||||||| |||| Sbjct 32814 AGGGTGCGGCCATCCTCAAGCTGCTTACCAGCAAAGATGAGCCTCTGTTGATCTGGTGGG 32755 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATC---GCTCGATTCT 288423 || ||||| || ||||| || || |||||||| || || |||| ||| |||| || Sbjct 32754 ATCCCTTCCTTGTCCTGTATCTTTGCTTTCACATTGTCAATAGTATCAGAGCTC---TCC 32698 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || | ||||| |||||||| ||||||||||| || || |||||||| Sbjct 32697 ACCTCCAATGTGATTGTCTTCCCAGTCAGAGTCTTCACAAAGATCTGCAT 32648 Score = 102 bits (112), Expect = 2e-16 Identities = 164/233 (70%), Gaps = 12/233 (5%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || | || || ||||||| || ||||||||||| || || || || Sbjct 31506 CCACCACGTAGACGGAGGACAAGATGAAGGGTAGACTCTTTTTGGATGTTGTAATCAGCA 31447 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT--- 288363 || || || || ||||| | ||||| || || |||||||| | ||| || |||| Sbjct 31446 AGTGTTCGGCCATCTTCAAGCTGTTTCCCAGCAAAGATCAGTCTCTGCTG---ATCTGGA 31390 Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATC---GCTCGAT 288420 || || ||||| || || || || || ||||| || || || || | || ||| Sbjct 31389 GGAATGCCTTCCTTGTCTTGAATCTTAGCTTTGACATTATCAATGGTGTCAGAACTC--- 31333 Query 288421 TCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || || ||||| ||||| ||||| || ||||| || ||||||||||| Sbjct 31332 TCGACCTCAAGAGTGATGGTCTTTCCGGTGAGTGTCTTAACAAATATCTGCAT 31280 Score = 102 bits (112), Expect = 2e-16 Identities = 164/233 (70%), Gaps = 12/233 (5%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || | ||| || || |||| ||| || |||||||| || || || || Sbjct 31734 CCACCACGAAGGCGAAGGACAAGGTGAAGGGTGGACTCCTTTTGGATGTTGTAATCAGCA 31675 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || || || ||||| | ||||| || || |||||||| | ||| || |||||| Sbjct 31674 AGTGTTCGGCCATCTTCAAGCTGTTTCCCAGCAAAGATCAGCCTCTGCTGG---TCTGGG 31618 Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATC---GCTCGAT 288420 || ||||| || || || ||||| ||||| || || || || | || |||| Sbjct 31617 GGAATACCTTCCTTGTCTTGAATTTTAGCTTTGACATTATCAATGGTGTCTGAGCTC--- 31561 Query 288421 TCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || || || || ||||| ||||||||||| || || || || ||||| Sbjct 31560 TCGACCTCAAGAGTTATAGTCTTTCCGGTCAGAGTTTTAACAAAGATTTGCAT 31508 Score = 95.1 bits (104), Expect = 3e-14 Identities = 171/245 (70%), Gaps = 14/245 (6%) Strand=Plus/Plus Query 288235 ATTCATACATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATA 288294 ||||| | | |||||| ||||| || || || ||||||| || ||||| ||| || Sbjct 21723 ATTCAGAAGTTTCCACCACGGAGCCTGAGGACAAGATGAAGAGTAGACTCTTTGTGGCTA 21782 Query 288295 TTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGT 288354 || |||| || || ||||| || || || | || || || | ||||| || | | || Sbjct 21783 TTGTAGTTTGCAAGGGTGCGACCATCCTCAAGCTGCTTACCAGAAAAGATAAGCCTCCGT 21842 Query 288355 TGAGAATCTGG--GATTCCTT-CTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAA 288411 ||| ||||| || ||||| | || ||||| || | |||||||| | | ||| | Sbjct 21843 TGA---TCTGGTGGAATCCTTTCCTTGTCCTGTATCCTTGCTTTCACAGT--CAGTAGTA 21897 Query 288412 TC---GCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATC 288468 || |||| | || || | ||||| |||||||| ||||||||||| || || ||| Sbjct 21898 TCTGAGCTC---TTAACCTCCAATGTGATTGTCTTCCCAGTCAGAGTCTTCACAAAGATC 21954 Query 288469 TGCAT 288473 ||||| Sbjct 21955 TGCAT 21959 Score = 91.5 bits (100), Expect = 3e-13 Identities = 162/234 (69%), Gaps = 12/234 (5%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || | ||| || || |||| ||| || |||||||| || || || || Sbjct 22655 CCACCACGAAGGCGAAGGACAAGGTGAAGGGTGGACTCCTTTTGGATGTTGTAATCAGCA 22714 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | || || || ||||| | || || || || |||||||| | ||| || |||||| Sbjct 22715 ACTGTTCGGCCATCTTCAAGATGATTCCCAGCAAAGATCAGCCTCTGCTGG---TCTGGG 22771 Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATC---GCTCGAT 288420 || ||||| || || | ||||| ||||| || || || || | || |||| Sbjct 22772 GGAATACCTTCCTTGTCTTCAATTTTAGCTTTGACATTATCAATGGTGTCTGAGCTC--- 22828 Query 288421 TCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 || || || || || || ||||| ||||||||||| || || || || |||||| Sbjct 22829 TCGACCTCAAGAGTTATAGTCTTTCCGGTCAGAGTTTTAACAAAGATTTGCATT 22882 >seq21138 Length=28562 Score = 132 bits (146), Expect = 1e-25 Identities = 168/230 (73%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| | || |||||||| | ||| || || ||||| || |||||||| Sbjct 12994 CCACCACGGAGACGGAGCACGAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGCA 13053 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || || || || || | || ||||| ||||| |||| |||||| || |||||| Sbjct 13054 AGAGTACGACCATCCTCAAGCTGCTTTCCGGCGAAAATCAAACGCTGCTGG---TCTGGG 13110 Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 || ||||| || |||||||| || ||||| || || || || | ||| || || Sbjct 13111 GGAATCCCTTCCTTGTCCTGGATCTTGGCTTTGACATTGTCGATGGTGTCGGAAGACTCA 13170 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || |||||||||||||| || || || || ||||| |||||||| Sbjct 13171 ACCTCTAGGGTGATCGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCAT 13220 >seq2718 Length=65933 Score = 125 bits (138), Expect = 2e-23 Identities = 169/233 (73%), Gaps = 12/233 (5%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| | || || | ||| | ||| || || ||||| || ||||| || Sbjct 44516 CCACCACGGAGACGGAGCACCAAATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCT 44457 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| || ||||| || || |||||||| ||||||| | ||| || |||||| Sbjct 44456 AGGGTGCGGCCATCTTCCAACTGCTTTCCTGCAAAGATCAACCTCTGCTGG---TCTGGG 44400 Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATC---GCTCGAT 288420 || ||||| ||||||||||| || || || ||||| || || | || ||| | Sbjct 44399 GGAATGCCTTCCTTATCCTGGATCTTAGCCTTGACGTTGTCAATGGTGTCTGAGCT---T 44343 Query 288421 TCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || || || |||||||| || || |||||||| ||||| |||||||| Sbjct 44342 TCGACCTCAAGGGTAATCGTCTTACCCGTAAGAGTCTTCACGAAGATCTGCAT 44290 Score = 123 bits (136), Expect = 6e-23 Identities = 166/230 (72%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| | || || ||||| | || || || ||||| || ||||| || Sbjct 44744 CCACCACGGAGACGGAGGACAAGATGGAGGGTAGACTCCTTCTGGATGTTGTAGTCAGCC 44685 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| || || || | || ||||| |||||||||| | ||| || |||||| Sbjct 44684 AGAGTGCGGCCATCCTCAAGCTGCTTTCCAGCGAAGATCAACCTCTGCTGG---TCTGGG 44628 Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 || ||||| ||||||||||| || || |||||||| || || | ||| ||| Sbjct 44627 GGGATCCCTTCCTTATCCTGGATCTTAGCCTTCACGTTGTCAATGGTGTCGGAGCTTTCC 44568 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || | ||||| ||||| ||||| |||||||| ||||| |||||||| Sbjct 44567 ACCTCCAAAGTGATGGTCTTTCCGGTAAGAGTCTTAACGAAGATCTGCAT 44518 Score = 107 bits (118), Expect = 5e-18 Identities = 141/194 (73%), Gaps = 6/194 (3%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || || || || || || |||||||| || || || ||||| |||||| Sbjct 44252 TCCTTCTGGATGTTGTAATCAGCTAGAGTACGTCCGTCCTCCAACTGCTTTCCGGCGAAG 44193 Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 ||||| | || || ||| ||| || ||||| || |||||||| || || || ||| Sbjct 44192 ATCAGCCTTTGCTG---ATCCGGGGGAATCCCTTCCTTGTCCTGGATCTTAGCCTTAACG 44136 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 || || || | ||| ||| || || || ||||| ||||| ||||| ||||| || Sbjct 44135 TTGTCGATTGTATCAGAACTTTCCACCTCTAGGGTGATAGTCTTTCCGGTGAGAGTTTTC 44076 Query 288460 ACGAATATCTGCAT 288473 || || |||||||| Sbjct 44075 ACAAAGATCTGCAT 44062 Score = 102 bits (112), Expect = 2e-16 Identities = 162/231 (70%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| | || || || || | || ||| || |||||||| ||||| || Sbjct 45428 CCACCACGGAGACGGAGGACAAGGTGCAGGGTAGATTCCTTCTGGATATTGTAGTCAGCA 45369 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| || || || | || || || |||||||||| | ||| || |||| Sbjct 45368 AGGGTGCGGCCATCCTCAAGCTGCTTACCAGCGAAGATCAACCTCTGCTGGTCTGGTGGG 45309 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCG---CTCGATTCT 288423 || || || || ||||| || || |||||||| || || || | || ||| || Sbjct 45308 ATCCCCTCCTTGTCCTGAATCTTAGCTTTCACATTGTCGATGGTGTCAGAACTC---TCC 45252 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 || || | ||||| ||||||||||||| ||||| || || ||||||||| Sbjct 45251 ACCTCCAAAGTGATGGTCTTCCCGGTCAAGGTCTTCACAAAGATCTGCATT 45201 >seq3191 Length=14904 Score = 104 bits (114), Expect = 6e-17 Identities = 86/105 (82%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 288370 CCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCG 288429 ||||| || ||||| || || ||||| || || || || | |||||| ||||| ||||| Sbjct 6285 CCTTCCTTGTCCTGTATCTTAGCTTTGACATTATCGATGGTATCGCTGGATTCAACTTCC 6226 Query 288430 AGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 ||||| ||||| || ||||||||||| || ||||||||||||||| Sbjct 6225 AGCGTTATCGTTTTACCGGTCAGAGTTTTCACGAATATCTGCATT 6181 >seq29 Length=28306 Score = 100 bits (110), Expect = 7e-16 Identities = 142/197 (72%), Gaps = 12/197 (6%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || || || || || || || || || || |||||||| | || |||||||| ||| Sbjct 27904 TCCTTCTGAATGTTGTAATCAGCTAGAGTACGGCCGTCTTCAAGCTGCTTTCCTGCAAAG 27845 Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 ||||| | ||| || |||||| || ||||| || |||||||| || ||||| ||| Sbjct 27844 ATCAGCCTCTGCTGG---TCTGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCTTTAACG 27788 Query 288400 TTTTCTATAGAATC---GCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTC 288456 || || || | || ||| ||| || || || ||||| ||||| || || || || Sbjct 27787 TTGTCAATGGTGTCTGAGCT---TTCCACCTCAAGGGTGATAGTCTTTCCAGTGAGGGTT 27731 Query 288457 TTGACGAATATCTGCAT 288473 || || ||||||||||| Sbjct 27730 TTAACAAATATCTGCAT 27714 >seq315 Length=36364 Score = 84.2 bits (92), Expect = 5e-11 Identities = 70/86 (81%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 72702 AGAGATTGGGGATATGCGAAGGATTACGTAGAAGCAATGTGGTTGATGCTGCAACAAGAT 72761 || |||||||| | ||| ||| || ||||||||||||||| |||||||||| ||||| Sbjct 29803 AGGGATTGGGGTTTTGCTGGGGACTATGTAGAAGCAATGTGGATGATGCTGCAGCAAGAG 29862 Query 72762 ACTCCGGATGACTATGTGATTGCAAC 72787 | |||||||| |||||| | ||||| Sbjct 29863 AAGCCGGATGATTATGTGGTAGCAAC 29888 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178950163280732