Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20arcanum_20[genbank_20GCA_5F000612985.1_202014-03-22] 46,594 sequences; 665,186,956 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq11273 125 5e-24 seq1518 95.1 9e-15 seq29 89.7 4e-13 seq8313 87.8 1e-12 seq2718 87.8 1e-12 seq8314 84.2 2e-11 >seq11273 Length=79338 Score = 125 bits (138), Expect = 5e-24 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 || |||| ||| | || || | ||| || || || || || || |||||||| || Sbjct 32418 CCTCCTCTCAAACGCAACACCAGATGGAGAGTTGACTCCTTCTGGATGTTGTAGTCTGCA 32359 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 ||| | ||| |||| || | |||||| ||||| | ||||||||||||||||| ||| Sbjct 32358 AGAGTCCTCCCGTCCTCAAGTTGTTTACCAGCAAAGATCAAACGCTGTTGGTCTGGGGGA 32299 Query 15070 ATTCCTTCCTTGTCACAAAT-TTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTAC 15128 || || |||||||| ||| |||||||| ||| | || || ||||| | | || || Sbjct 32298 ATACCCTCCTTGTCTTGAATCTTTGCTTTC-ACATTGTCAATGGTATCTGAACTCTCAAC 32240 Query 15129 GTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || || ||||| || || || |||| ||| || |||||||||||||| Sbjct 32239 CTCCAATGTAATTGTCTTCCCAGTCAAAGTCTTGACAAAAATTTGCAT 32192 Score = 107 bits (118), Expect = 1e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 || |||| ||| | || || | ||| || || || || || || |||||||| || Sbjct 32646 CCTCCTCTCAAACGCAACACCAGATGGAGAGTTGACTCCTTCTGGATGTTGTAGTCTGCA 32587 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 ||| | ||| | || || | |||||| ||||| | ||||||||||||||||| ||| Sbjct 32586 AGAGTCCTCCCATCCTCAAGTTGTTTACCAGCAAAGATCAAACGCTGTTGGTCTGGGGGA 32527 Query 15070 ATTCCTTCCTTGTCACAAAT-TTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTAC 15128 || || |||||||| ||| ||||| ||| ||| | || || ||||| | | || || Sbjct 32526 ATACCCTCCTTGTCTTGAATCTTTGC-TTTCACATTGTCAATGGTATCTGAACTCTCAAC 32468 Query 15129 GTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || || || || || || || |||| ||| || ||||| || ||||| Sbjct 32467 CTCCAATGTGATTGTCTTCCCAGTCAAAGTCTTCACAAAGATCTGCAT 32420 Score = 96.9 bits (106), Expect = 2e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGT 15033 |||||||| || || ||||| ||||||||||| || ||| | ||||| | ||| Sbjct 31710 TGAAGGGTGGACTCCTTTTGGATGTTGTAATCAGCAAGTGTTCGGCCATCTTCAAGCTGT 31651 Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTG 15093 || ||||| | |||| | ||| ||||| ||||| ||||||||||| |||||| Sbjct 31650 TTCCCAGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATACCTTCCTTGTCTTGAATTTTA 31591 Query 15094 CTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTC 15153 ||| ||| | || || || || | || || || | || || || || || ||| Sbjct 31590 GCTTTGACATTATCAATGGTGTCTGAGCTCTCGACCTCAAGAGTTATAGTCTTTCCGGTC 31531 Query 15154 AGAGTTTTTACAAAAATTTGCAT 15176 |||||||| ||||| |||||||| Sbjct 31530 AGAGTTTTAACAAAGATTTGCAT 31508 Score = 95.1 bits (104), Expect = 9e-15 Identities = 163/232 (70%), Gaps = 6/232 (3%) Strand=Plus/Minus Query 14948 TGCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGC 15007 ||||||||| | | | ||| | || ||||| || ||||| || |||||||||| | Sbjct 32192 TGCCACCTCTAAGGCGAAGAACAAGGTGCAGGGTTGATTCTTTCTGAATGTTGTAAT--C 32135 Query 15008 TGAGAA--TTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTT 15065 || || | || | || || | ||| || ||||| | ||||| | ||| ||||| Sbjct 32134 TGCCAACGTCCTTCCATCCTCAAGTTGCTTTCCAGCAAAGATCAATCTCTGCTGGTCTGG 32075 Query 15066 TGGAATTCCTTCCTTGTCACAAAT-TTTGCTTTTTACAATTTCTATAGTATCGCTATTTT 15124 ||||| || |||||||| || ||||| ||| ||| | || |||||||| | | | Sbjct 32074 AGGAATACCCTCCTTGTCTTGGATCTTTGC-TTTAACATTGTCGATAGTATCTGAACTCT 32016 Query 15125 CTACGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 | || || || ||||| || || ||||||| || || ||||| |||||||| Sbjct 32015 CAACCTCCAAAGTAATTGTCTTCCCTGTCAATGTCTTGACAAATATTTGCAT 31964 Score = 93.3 bits (102), Expect = 3e-14 Identities = 152/218 (70%), Gaps = 2/218 (1%) Strand=Plus/Minus Query 14973 ATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTG 15032 |||||||||||| |||||||| ||||||||||| || ||| | ||||| | || Sbjct 31483 ATGAAGGGTAGACTCTTTTTGGATGTTGTAATCAGCAAGTGTTCGGCCATCTTCAAGCTG 31424 Query 15033 TTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTT 15092 ||| ||||| | |||| | ||| || || ||||| ||||||||||| ||| || Sbjct 31423 TTTCCCAGCAAAGATCAGTCTCTGCTGATCTGGAGGAATGCCTTCCTTGTCTTGAATCTT 31364 Query 15093 GCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGT 15152 ||| ||| | || || || || | | || || || | || ||||| || || || Sbjct 31363 AGCTTTGACATTATCAATGGTGTCAGAACTCTCGACCTCAAGAGTGATGGTCTTTCCGGT 31304 Query 15153 CAGAGTTTTTACAAAAATTTGCATATTTGAAATAAATT 15190 || || || ||||| || ||| || ||||||| ||| Sbjct 31303 GAGTGTCTTAACAAATATCTGC--ATCTGAAATATATT 31268 Score = 87.8 bits (96), Expect = 1e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGT 15033 |||||||| || || ||||| ||||||||||| | ||| | ||||| | || Sbjct 22679 TGAAGGGTGGACTCCTTTTGGATGTTGTAATCAGCAACTGTTCGGCCATCTTCAAGATGA 22738 Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTG 15093 || ||||| | |||| | ||| ||||| ||||| ||||||||||| |||||| Sbjct 22739 TTCCCAGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATACCTTCCTTGTCTTCAATTTTA 22798 Query 15094 CTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTC 15153 ||| ||| | || || || || | || || || | || || || || || ||| Sbjct 22799 GCTTTGACATTATCAATGGTGTCTGAGCTCTCGACCTCAAGAGTTATAGTCTTTCCGGTC 22858 Query 15154 AGAGTTTTTACAAAAATTTGCAT 15176 |||||||| ||||| |||||||| Sbjct 22859 AGAGTTTTAACAAAGATTTGCAT 22881 Score = 84.2 bits (92), Expect = 2e-11 Identities = 161/231 (70%), Gaps = 5/231 (2%) Strand=Plus/Plus Query 14948 TGCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATC-G 15006 ||||||||| | | || ||| | || ||||| || | ||| || ||||||||||| | Sbjct 22197 TGCCACCTCTAAGACGTAGAACAACGTGCAGGGTTGACTGTTTCTGAATGTTGTAATCTG 22256 Query 15007 CTGAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTT 15066 | || | || | ||||| | ||| | ||||| ||||||| | ||| |||| Sbjct 22257 CCAAG-GTCCTTCCATCTTCAAGTTGCTCTCCAGCAAATATCAATCTCTGCTGGTTTGGA 22315 Query 15067 GGAATTCCTTCC-TTGTCACAAAT-TTTGCTTTTTACAATTTCTATAGTATCGCTATTTT 15124 ||||| || ||| ||||| || ||||| ||| ||| | | |||||||| | | | Sbjct 22316 GGAATACCCTCCTTTGTCTTGGATCTTTGC-TTTAACATTGTTGATAGTATCTGAACTCT 22374 Query 15125 CTACGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCA 15175 | || || || ||||| || || ||||||| || || ||||| ||||||| Sbjct 22375 CAACCTCCAAAGTAATTGTCTTCCCTGTCAATGTCTTAACAAATATTTGCA 22425 >seq1518 Length=20725 Score = 95.1 bits (104), Expect = 9e-15 Identities = 139/194 (72%), Gaps = 2/194 (1%) Strand=Plus/Minus Query 14987 CTTTTTGTATGTTGTAATC-GCTGAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTAT 15045 |||| || ||||||||||| ||| ||| | | | ||||| | || || || ||| | Sbjct 13844 CTTTCTGAATGTTGTAATCAGCT-AGAGTACGTCCATCTTCGAGCTGCTTTCCGGCGAAG 13786 Query 15046 ATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATT 15105 ||||| ||||| ||||| |||||| ||||||||||| ||| || ||| ||| | Sbjct 13785 ATCAATCGCTGCTGGTCTGGTGGAATACCTTCCTTGTCTTGAATCTTAGCTTTGACATTG 13726 Query 15106 TCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACA 15165 || ||||| ||||| ||| || || | || || || || || || |||||||| || Sbjct 13725 TCAATAGTGTCGCTCGATTCAACTTCAAGCGTGATCGTCTTCCCCGTAAGAGTTTTCACG 13666 Query 15166 AAAATTTGCATATT 15179 || || ||||| || Sbjct 13665 AAGATCTGCATTTT 13652 >seq29 Length=28306 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| || | | || || || |||||||| || || || || ||||||||||| Sbjct 28168 CCACCACGWAGACGTAGCACCAAGTGAAGGGTTGATTCCTTCTGGATGTTGTAATCAGCA 28109 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 || | || |||| || | || ||||| || | ||||| | || ||||| ||| Sbjct 28108 AGGGTCCTGCCGTCCTCAAGCTGCTTGCCCGCAAAGATCAACCTTTGCTGGTCTGGGGGA 28049 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 || ||||||||||| || || || ||| | || || || || |||| || Sbjct 28048 ATGCCTTCCTTGTCTTGGATCTTAGCCTTAACATTGTCAATGGTGTCAGAGCTTTCAACC 27989 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || | ||| ||||| || ||||||| |||||| || ||||||||||| Sbjct 27988 TCAAGGGTGATGGTCTTTCCTGTCAAAGTTTTCACGAAAATTTGCAT 27942 >seq8313 Length=21892 Score = 87.8 bits (96), Expect = 1e-12 Identities = 148/209 (71%), Gaps = 4/209 (2%) Strand=Plus/Plus Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATC-GCTGAGAATTCTCGCGTCTTCTAATTG 15032 || ||||| || || || || |||||||| || ||| || ||| | || || | || Sbjct 1340 TGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGCT-AGCGTTCGGCCATCCTCAAGCTG 1398 Query 15033 TTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTT 15092 || || ||| | ||||| ||||| ||||| |||||| ||||||||||| ||| || Sbjct 1399 CTTTCCCGCGAAAATCAACCGCTGCTGGTCTGGTGGAATGCCTTCCTTGTCCTGAATCTT 1458 Query 15093 GCTTTTTACAATTTCTATAGTATCGCTAT-TTTCTACGTCTAAGGTAATGGTTTTACCTG 15151 || ||| | || || || || | || ||||| ||||||||||| || || || | Sbjct 1459 AGCCTTAACATTGTCAATGGTGTC-CGATGACTCTACCTCTAAGGTAATAGTCTTGCCCG 1517 Query 15152 TCAGAGTTTTTACAAAAATTTGCATATTT 15180 | || || || ||||| || ||||| ||| Sbjct 1518 TTAGGGTCTTCACAAAGATCTGCATTTTT 1546 >seq2718 Length=65933 Score = 87.8 bits (96), Expect = 1e-12 Identities = 147/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATC-GCTGAGAATTCTCGCGTCTTC 15026 || ||||| |||||||| || || || ||||||||||| ||| ||| | | |||| || Sbjct 44270 ACCAAATGGAGGGTAGACTCCTTCTGGATGTTGTAATCAGCT-AGAGTACGTCCGTCCTC 44212 Query 15027 TAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACA 15086 || || || || ||| | |||| | || || || ||||| ||||||||||| Sbjct 44211 CAACTGCTTTCCGGCGAAGATCAGCCTTTGCTGATCCGGGGGAATCCCTTCCTTGTCCTG 44152 Query 15087 AATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTT 15146 || || || || | || || ||||| | |||| || |||| ||| || || || Sbjct 44151 GATCTTAGCCTTAACGTTGTCGATTGTATCAGAACTTTCCACCTCTAGGGTGATAGTCTT 44092 Query 15147 ACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || || |||||||| ||||| || ||||| Sbjct 44091 TCCGGTGAGAGTTTTCACAAAGATCTGCAT 44062 >seq8314 Length=67656 Score = 84.2 bits (92), Expect = 2e-11 Identities = 145/208 (70%), Gaps = 2/208 (1%) Strand=Plus/Minus Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATC-GCTGAGAATTCTCGCGTCTTCTAATTG 15032 || ||||| || || || || |||||||| || ||| || ||| | || || | || Sbjct 25971 TGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCT-AGCGTTCGGCCATCCTCGAGCTG 25913 Query 15033 TTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTT 15092 || || ||| | ||||| ||||| ||||| |||||| ||||||||||| ||| || Sbjct 25912 CTTACCGGCGAAAATCAATCGCTGCTGGTCTGGTGGAATGCCTTCCTTGTCTTGAATCTT 25853 Query 15093 GCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGT 15152 || ||| | || || || || ||||| || |||||||| || || || || Sbjct 25852 AGCCTTAACATTGTCAATGGTGTCTGATGACTCTACCTCCAAGGTAATAGTCTTGCCCGT 25793 Query 15153 CAGAGTTTTTACAAAAATTTGCATATTT 15180 ||| || || ||||| || ||||| ||| Sbjct 25792 CAGGGTCTTCACAAAGATCTGCATTTTT 25765 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357189049815290