Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20arcanum_20[genbank_20GCA_5F000612985.1_202014-03-22] 46,594 sequences; 665,186,956 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq11273 129 6e-25 seq2718 113 4e-20 seq8314 89.7 5e-13 seq1518 89.7 5e-13 seq30 89.7 5e-13 >seq11273 Length=79338 Score = 129 bits (142), Expect = 6e-25 Identities = 167/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| |||| || | || | ||| | |||||||||||||| || |||||||| | Sbjct 31506 CCACCACGTAGACGGAGGACAAGATGAAGGGTAGACTCTTTTTGGATGTTGTAATCAGCA 31447 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || || ||| || |||||||| ||||| |||||| || ||||||||| ||||| Sbjct 31446 AGTGTTCGGCCATCTTCAAGCTGTTTCCCAGCAAAGATCAGTCTCTGCTGATCTGGAGGA 31387 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGC-TTGAGTTGTTCGACGGTGTCCGTACTCTCGAC 127065 ||||| ||||||| | ||| | | || |||| | || | |||||| | ||||||||| Sbjct 31386 ATGCCTTCCTTGT-CTTGAATCTTAGCTTTGACATTATCAATGGTGTCAGAACTCTCGAC 31328 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | || | || || ||||| || || || ||||| |||||||| Sbjct 31327 CTCAAGAGTGATGGTCTTTCCGGTGAGTGTCTTAACAAATATCTGCAT 31280 Score = 107 bits (118), Expect = 2e-18 Identities = 144/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| ||||| || |||||||| | | || || ||| || |||||||| ||| Sbjct 31704 GTGGACTCCTTTTGGATGTTGTAATCAGCAAGTGTTCGGCCATCTTCAAGCTGTTTCCCA 31645 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTT- 127035 || |||||| | |||||| || || || || || |||||||| ||| ||| |||| Sbjct 31644 GCAAAGATCAGCCTCTGCTGGTCTGGGGGAATACCTTCCTTGTCT-TGAATTTTAGCTTT 31586 Query 127036 GAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGT 127095 || | || | |||||| | |||||||| || | || | || || ||||||||||| Sbjct 31585 GACATTATCAATGGTGTCTGAGCTCTCGACCTCAAGAGTTATAGTCTTTCCGGTCAGAGT 31526 Query 127096 TTTTACAAAAATCTGCAT 127113 ||| ||||| || ||||| Sbjct 31525 TTTAACAAAGATTTGCAT 31508 Score = 104 bits (114), Expect = 2e-17 Identities = 145/200 (73%), Gaps = 4/200 (2%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || || ||||| ||||| |||||||| ||| ||| | ||| || || || |||||| Sbjct 32160 GTTGATTCTTTCTGAATGTTGTAATCTGCCAACGTCCTTCCATCCTCAAGTTGCTTTCCA 32101 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 || ||||||||| |||||| || ||||| || ||||||||||| ||| || ||||| Sbjct 32100 GCAAAGATCAATCTCTGCTGGTCTGGAGGAATACCCTCCTTGTCTTGGATCTT-TGCTTT 32042 Query 127037 A--GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAG 127094 | ||| |||| || || | |||||| || || | || | || || || |||| | Sbjct 32041 AACATTG-TCGATAGTATCTGAACTCTCAACCTCCAAAGTAATTGTCTTCCCTGTCAATG 31983 Query 127095 TTTTTACAAAAATCTGCATG 127114 | || ||||| || |||||| Sbjct 31982 TCTTGACAAATATTTGCATG 31963 Score = 98.7 bits (108), Expect = 9e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| | | ||| | || | ||||| ||||||||||| ||||||||||| || || Sbjct 31962 CCACCCCTCAGTCGAAGAACAAGATGTAAGGTAGACTCTTTCTGAATATTGTAGTCAGCC 31903 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || | ||| || || || || || || |||||| || |||||| || ||||| Sbjct 31902 AGGGTCCTTCCATCCTCGAGTTGCTTGCCGGCAAAGATCAGTCTCTGCTGGTCTGGAGGA 31843 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065 || || ||||| ||| ||||| ||| | |||| || | || || | ||| || || Sbjct 31842 ATCCCTTCCTTATCCTGAATTTTGGCCTTCACGTTG-TCAATAGTATCGGAACTTTCAAC 31784 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 ||| | ||| | || || || || || || || ||||| |||||||| Sbjct 31783 TTCAAGGGTGATGGTCTTTCCAGTAAGTGTCTTGACAAAGATCTGCAT 31736 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| ||||| || |||||||| | | || || ||| || || || || ||| Sbjct 22685 GTGGACTCCTTTTGGATGTTGTAATCAGCAACTGTTCGGCCATCTTCAAGATGATTCCCA 22744 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 || |||||| | |||||| || || || || || |||||||| ||||| ||| Sbjct 22745 GCAAAGATCAGCCTCTGCTGGTCTGGGGGAATACCTTCCTTGTCTTCAATTTTAGCTTTG 22804 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | || | |||||| | |||||||| || | || | || || |||||||||||| Sbjct 22805 ACATTATCAATGGTGTCTGAGCTCTCGACCTCAAGAGTTATAGTCTTTCCGGTCAGAGTT 22864 Query 127097 TTTACAAAAATCTGCAT 127113 || ||||| || ||||| Sbjct 22865 TTAACAAAGATTTGCAT 22881 Score = 95.1 bits (104), Expect = 1e-14 Identities = 154/219 (70%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 126896 AATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGA 126955 || |||||||||| ||| | || ||||| || || || ||||| || | | || | Sbjct 32637 AAACGCAACACCAGATGGAGAGTTGACTCCTTCTGGATGTTGTAGTCTGCAAGAGTCCTC 32578 Query 126956 GAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCC 127015 ||| || || ||||| ||||| ||||||| ||||| || || || || || |||||| Sbjct 32577 CCATCCTCAAGTTGTTTACCAGCAAAGATCAAACGCTGTTGGTCTGGGGGAATACCCTCC 32518 Query 127016 TTGTCCGTGATTTTCTGC-TTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGT 127074 |||| | ||| | | ||| || | | || | ||| || | |||||| || || | || Sbjct 32517 TTGT-CTTGAATCTTTGCTTTCACATTGTCAATGGTATCTGAACTCTCAACCTCCAATGT 32459 Query 127075 CACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 | || || || |||| ||| || ||||| |||||||| Sbjct 32458 GATTGTCTTCCCAGTCAAAGTCTTCACAAAGATCTGCAT 32420 Score = 93.3 bits (102), Expect = 4e-14 Identities = 154/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 126896 AATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGA 126955 || |||||||||| ||| | || ||||| || || || ||||| || | | || | Sbjct 32409 AAACGCAACACCAGATGGAGAGTTGACTCCTTCTGGATGTTGTAGTCTGCAAGAGTCCTC 32350 Query 126956 GAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCC 127015 || || || ||||| ||||| ||||||| ||||| || || || || || |||||| Sbjct 32349 CCGTCCTCAAGTTGTTTACCAGCAAAGATCAAACGCTGTTGGTCTGGGGGAATACCCTCC 32290 Query 127016 TTGTCCGTGATTTTCTGC-TTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGT 127074 |||| | ||| | | ||| || | | || | ||| || | |||||| || || | || Sbjct 32289 TTGT-CTTGAATCTTTGCTTTCACATTGTCAATGGTATCTGAACTCTCAACCTCCAATGT 32231 Query 127075 CACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 | || || || |||| ||| || |||||||| |||||| Sbjct 32230 AATTGTCTTCCCAGTCAAAGTCTTGACAAAAATTTGCATG 32191 >seq2718 Length=65933 Score = 113 bits (124), Expect = 4e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 126904 CACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTC 126963 |||||| || | || ||||| ||||| || || || || ||| ||||| ||| || Sbjct 45183 CACCAAGTGCAGGGTCGACTCCTTTTGGATGTTATAGTCCGCCAAAGTGCGGCCATCCTC 45124 Query 126964 TAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGT 127023 ||||| || ||||| | ||||| | |||||| || || || || ||||||||||| Sbjct 45123 GAGCTGCTTGCCAGCAAAAATCAACCTCTGCTGGTCTGGGGGGATACCCTCCTTGTCTTG 45064 Query 127024 GATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTT 127083 ||| || ||||| | || | |||||| | ||||| || || | ||| | ||||| Sbjct 45063 GATCTTGGCCTTGACATTGTCAATGGTGTCGGAGCTCTCAACCTCCAGGGTGATGGTTTT 45004 Query 127084 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 ||||| ||||| || ||||| |||||||| Sbjct 45003 CCCGGTAAGAGTCTTAACAAAGATCTGCAT 44974 Score = 107 bits (118), Expect = 2e-18 Identities = 144/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 ||||| || || || |||||||| || | | ||||| ||| || ||||| || ||| Sbjct 45398 GTAGATTCCTTCTGGATATTGTAGTCAGCAAGGGTGCGGCCATCCTCAAGCTGCTTACCA 45339 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGC-TT 127035 ||| ||||||| | |||||| || || || || |||||||||||| ||| | | || || Sbjct 45338 GCGAAGATCAACCTCTGCTGGTCTGGTGGGATCCCCTCCTTGTCC-TGAATCTTAGCTTT 45280 Query 127036 GAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGT 127095 | | |||| |||||| | |||||| || || | || | || || ||||||| || Sbjct 45279 CACATTGTCGATGGTGTCAGAACTCTCCACCTCCAAAGTGATGGTCTTCCCGGTCAAGGT 45220 Query 127096 TTTTACAAAAATCTGCAT 127113 || ||||| |||||||| Sbjct 45219 CTTCACAAAGATCTGCAT 45202 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| || || || ||||| ||| | | ||||| ||| || ||||| || ||| Sbjct 44942 GTCGACTCCTTCTGGATGTTGTAGTCGGCAAGGGTGCGGCCATCCTCGAGCTGCTTACCA 44883 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| ||||||| | |||||| || || || || |||||||||||| ||| || ||| Sbjct 44882 GCGAAGATCAACCTCTGCTGGTCTGGGGGAATTCCCTCCTTGTCCTGGATCTTAGCCTTA 44823 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | || | |||||| | || || || || | || | || || ||||| || || Sbjct 44822 ACATTATCAATGGTGTCGGAGCTTTCCACCTCCAAAGTGATAGTCTTTCCGGTGAGGGTC 44763 Query 127097 TTTACAAAAATCTGCAT 127113 || |||||||||||||| Sbjct 44762 TTAACAAAAATCTGCAT 44746 >seq8314 Length=67656 Score = 89.7 bits (98), Expect = 5e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| || || || ||||| || | | ||| || ||| || ||||| || || Sbjct 25965 GTGGACTCCTTCTGGATGTTGTAGTCAGCTAGCGTTCGGCCATCCTCGAGCTGCTTACCG 25906 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| | |||||||||||||| || || || ||||| |||||||| || || ||| Sbjct 25905 GCGAAAATCAATCGCTGCTGGTCTGGTGGAATGCCTTCCTTGTCTTGAATCTTAGCCTTA 25846 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | || | |||||| | ||| || || | ||| | || ||||| ||||| || Sbjct 25845 ACATTGTCAATGGTGTCTGATGACTCTACCTCCAAGGTAATAGTCTTGCCCGTCAGGGTC 25786 Query 127097 TTTACAAAAATCTGCAT 127113 || ||||| |||||||| Sbjct 25785 TTCACAAAGATCTGCAT 25769 >seq1518 Length=20725 Score = 89.7 bits (98), Expect = 5e-13 Identities = 136/191 (71%), Gaps = 2/191 (1%) Strand=Plus/Minus Query 126924 CTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGA 126983 |||| ||||| |||||||| | | || || ||| || ||||| ||||| ||| ||| Sbjct 13844 CTTTCTGAATGTTGTAATCAGCTAGAGTACGTCCATCTTCGAGCTGCTTTCCGGCGAAGA 13785 Query 126984 TCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGC-TTGAGTTGT 127042 ||||||||||||| || || || || || ||||||| | ||| | | || |||| | Sbjct 13784 TCAATCGCTGCTGGTCTGGTGGAATACCTTCCTTGT-CTTGAATCTTAGCTTTGACATTG 13726 Query 127043 TCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACA 127102 || | ||||| | || ||||| | || | ||| || || || |||||||| || Sbjct 13725 TCAATAGTGTCGCTCGATTCAACTTCAAGCGTGATCGTCTTCCCCGTAAGAGTTTTCACG 13666 Query 127103 AAAATCTGCAT 127113 || |||||||| Sbjct 13665 AAGATCTGCAT 13655 >seq30 Length=32432 Score = 89.7 bits (98), Expect = 5e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 |||||||| ||||| || ||||| || ||| || | ||| || || || || || Sbjct 638 GTAGACTCCTTTTGGATGTTGTAGTCCGCCAGAGTCCTTCCATCTTCAAGTTGCTTCCCT 579 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 || |||||| || |||||| || || || || |||||||||||| || || ||| Sbjct 578 GCAAAGATCAGTCTCTGCTGGTCTGGTGGGATTCCCTCCTTGTCCTGAATCTTAGCCTTC 519 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | || | ||| || | |||||| || || | || | ||||| || |||| || Sbjct 518 ACATTGTCAATGGTATCAGAACTCTCCACCTCCAAAGTTATGGTTTTCCCAGTCAAGGTC 459 Query 127097 TTTACAAAAATCTGCAT 127113 || |||||||||||||| Sbjct 458 TTCACAAAAATCTGCAT 442 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475223856446560