Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20arcanum_20[genbank_20GCA_5F000612985.1_202014-03-22] 46,594 sequences; 665,186,956 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq30 113 4e-20 seq21138 109 5e-19 seq11273 104 2e-17 seq8951 102 7e-17 seq5748 100 3e-16 seq2718 98.7 9e-16 seq8313 93.3 4e-14 seq8314 89.7 5e-13 >seq30 Length=32432 Score = 113 bits (124), Expect = 4e-20 Identities = 165/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || ||||| | |||||||||||| ||||| || ||||||||||| || ||||| |||||| Sbjct 443 ATACCTCCCCTGAGCCTCAACACAAGATGAAGGGTTGATTCCTTCTGAATATTGTAATCG 384 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | || | ||| ||||| || || || || | ||||| | ||||||||| || Sbjct 383 GCTAATGTCCTTCCATCTTCCAACTGCTTGCCAGCAAAAATCAACCTTTGCTGGTCTGGT 324 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 || || || ||||| || ||||| || || | || | || | ||||||||| || Sbjct 323 GGGATACCCTCTTTGTCCTGAATCTTGGCCTTTA-CGTTGTCAATGGTGTCGGAGCTTTC 265 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || || |||| || ||||| || | || || || || |||||||| Sbjct 264 CACCTCAAGGGTAATAGTCTTGCCAGTCAAGGTCTTCACGAAGATTTGCAT 214 >seq21138 Length=28562 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 || || ||||| | | ||| ||||| || || || ||||| ||||| || || ||| Sbjct 12994 CCACCACGGAGACGGAGCACGAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGCA 13053 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | || | ||| || | || ||||| ||| | ||||| || |||||||| || ||| Sbjct 13054 AGAGTACGACCATCCTCAAGCTGCTTTCCGGCGAAAATCAAACGCTGCTGGTCTGGGGGA 13113 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACT 45293 || ||||| || || || || || ||||| || | ||||||||||||||| || Sbjct 13114 ATCCCTTCCTTGTCCTGGATCTTGGCTTTGACATTGTCGATGGTGTCGGAAGACTCAACC 13173 Query 45294 TCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 || || || | ||| || || ||||| ||||| || || || |||||| Sbjct 13174 TCTAGGGTGATCGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCATC 13221 >seq11273 Length=79338 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCC 45191 || || || || || || ||||||||||| || ||||| | ||| ||| || Sbjct 31716 ACAAGGTGAAGGGTGGACTCCTTTTGGATGTTGTAATCAGCAAGTGTTCGGCCATCTTCA 31657 Query 45192 AATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGA 45251 | ||||| || || | |||| | |||||||| || ||||| ||||| || |||||| Sbjct 31656 AGCTGTTTCCCAGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATACCTTCCTTGTCTTGA 31597 Query 45252 ATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTG 45311 ||||| ||||| || | |||||| || |||||| || ||||| | || || Sbjct 31596 ATTTTAGCTTTGACATTATCAATGGTGTCTGAGCTCTCGACCTCAAGAGTTATAGTCTTT 31537 Query 45312 CCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 ||||| |||||||| ||||| ||||||||| Sbjct 31536 CCGGTCAGAGTTTTAACAAAGATTTGCATC 31507 Score = 98.7 bits (108), Expect = 9e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCC 45191 || || || || || || ||||||||||| || ||||| || ||| ||| || Sbjct 22673 ACAAGGTGAAGGGTGGACTCCTTTTGGATGTTGTAATCAGCAACTGTTCGGCCATCTTCA 22732 Query 45192 AATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGA 45251 | || || || || | |||| | |||||||| || ||||| ||||| || |||| | Sbjct 22733 AGATGATTCCCAGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATACCTTCCTTGTCTTCA 22792 Query 45252 ATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTG 45311 ||||| ||||| || | |||||| || |||||| || ||||| | || || Sbjct 22793 ATTTTAGCTTTGACATTATCAATGGTGTCTGAGCTCTCGACCTCAAGAGTTATAGTCTTT 22852 Query 45312 CCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| |||||||| ||||| |||||||| Sbjct 22853 CCGGTCAGAGTTTTAACAAAGATTTGCAT 22881 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCC 45191 || ||||| || || || || |||||||| || ||||| | ||| ||| || Sbjct 31488 ACAAGATGAAGGGTAGACTCTTTTTGGATGTTGTAATCAGCAAGTGTTCGGCCATCTTCA 31429 Query 45192 AATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGA 45251 | ||||| || || | |||| || ||||| || || ||||||||||| || |||||| Sbjct 31428 AGCTGTTTCCCAGCAAAGATCAGTCTCTGCTGATCTGGAGGAATGCCTTCCTTGTCTTGA 31369 Query 45252 ATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTG 45311 || || ||||| || | |||||| ||| |||||| || ||||| | || || Sbjct 31368 ATCTTAGCTTTGACATTATCAATGGTGTCAGAACTCTCGACCTCAAGAGTGATGGTCTTT 31309 Query 45312 CCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 ||||| || || || ||||| || |||||| Sbjct 31308 CCGGTGAGTGTCTTAACAAATATCTGCATC 31279 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 45128 CAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATC 45187 |||||| ||||| || ||||| ||||| ||||| || || || | || | || Sbjct 32404 CAACACCAGATGGAGAGTTGACTCCTTCTGGATGTTGTAGTCTGCAAGAGTCCTCCCGTC 32345 Query 45188 GTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATC 45247 || | |||||| || || | ||||| || || ||||| || ||||| || || || || Sbjct 32344 CTCAAGTTGTTTACCAGCAAAGATCAAACGCTGTTGGTCTGGGGGAATACCCTCCTTGTC 32285 Query 45248 TTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGT 45307 |||||| ||| ||| | || | ||| || ||| ||| || || | |||| || Sbjct 32284 TTGAATCTTTGCTTTCACATTGTCAATGGTATCTGAACTCTCAACCTCCAATGTAATTGT 32225 Query 45308 TTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || || | ||| || |||||||||||||| Sbjct 32224 CTTCCCAGTCAAAGTCTTGACAAAAATTTGCAT 32192 >seq8951 Length=56096 Score = 102 bits (112), Expect = 7e-17 Identities = 106/139 (76%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 45112 TTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGC 45171 ||||||| | |||||||| || || || || |||||||| || || || || ||||| Sbjct 33922 TTCCTCCCCTGAGCCTCAGAACAAGGTGAAGAGTTGATTCTTTCTGAATGTTGTAATCAG 33863 Query 45172 TGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCG 45231 | |||| || ||| |||||||||||||| || | |||| || ||||| ||||| | Sbjct 33862 CCAGGGTTCTACCATCTTCCAATTGTTTTCCAGCAAAAATCAGTCTCTGCTGATCCGGAG 33803 Query 45232 GAATGCCTTCTTTATCTTG 45250 | |||||||||||||| || Sbjct 33802 GTATGCCTTCTTTATCCTG 33784 >seq5748 Length=24579 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 ||||| | || ||||| || ||||| | || || |||||||| ||||| ||||| Sbjct 10194 CCTCCACAAAGACTCAAGACAAGATGAATTGTAGACTCCTTTTGAATATTGTAATCAGCA 10253 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | || | | ||| | ||||||||||| | ||| |||| ||| || || | ||| Sbjct 10254 AGTGTATGATCATCCTTAAATTGTTTTCCACCAAATACTAATCTTTGTTGATCTGAGGGA 10313 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACT 45293 || |||||||| |||| ||| ||| ||| | | | ||||| |||| || || Sbjct 10314 ATTCCTTCTTTGTCTTCAATCTTTGCTTTAACATTGTTAATGGTGTTGGAACTCTTCACA 10373 Query 45294 TCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 || ||||||| || || || | |||||||| ||||| ||||||||| Sbjct 10374 TCCAGAGTAATGGTCTTTCCAATGAGAGTTTTAACAAAGATTTGCATC 10421 >seq2718 Length=65933 Score = 98.7 bits (108), Expect = 9e-16 Identities = 164/232 (71%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATC- 45169 || || || ||||| | | ||| | ||| || || || ||||| ||||| || || || Sbjct 44519 ATACCACCACGGAGACGGAGCACCAAATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCA 44460 Query 45170 GCTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGG 45229 ||| | ||| ||| ||||| || |||||||| | ||||| | |||||||| || Sbjct 44459 GCT-AGGGTGCGGCCATCTTCCAACTGCTTTCCTGCAAAGATCAACCTCTGCTGGTCTGG 44401 Query 45230 CGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACT 45288 ||||||||||| ||||| || || || |||| || | || | |||||| || | Sbjct 44400 GGGAATGCCTTCCTTATCCTGGATCTTAGCCTTGA-CGTTGTCAATGGTGTCTGAGCTTT 44342 Query 45289 CGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 |||| || || |||| ||| || || || ||||| || || || || ||||| Sbjct 44341 CGACCTCAAGGGTAATCGTCTTACCCGTAAGAGTCTTCACGAAGATCTGCAT 44290 Score = 82.4 bits (90), Expect = 7e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 |||||||| | ||||| | ||| | ||||| || || ||||||||||| ||||| || Sbjct 45203 ATTCCTCCCCTCAGCCTAAGCACCAAGTGCAGGGTCGACTCCTTTTGGATGTTATAGTCC 45144 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | || ||| || | || || || || | ||||| | |||||||| || Sbjct 45143 GCCAAAGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAAATCAACCTCTGCTGGTCTGGG 45084 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 || || || || || ||||| || || |||| || | ||||||||| ||| Sbjct 45083 GGGATACCCTCCTTGTCTTGGATCTTGGCCTTGACATTGTCAATGGTGTCGGAGCTCTCA 45024 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || || || | ||||| ||||| ||||| || ||||| || ||||| Sbjct 45023 ACCTCCAGGGTGATGGTTTTCCCGGTAAGAGTCTTAACAAAGATCTGCAT 44974 >seq8313 Length=21892 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATC-GCT 45172 || || ||||| | | || || || || || |||||||| ||||| || || || ||| Sbjct 1316 CCACCACGGAGACGAAGGACAAGGTGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGCT 1375 Query 45173 GACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGG 45232 || || ||| || | || ||||| ||| | ||||| || |||||||| || || Sbjct 1376 AGCG-TTCGGCCATCCTCAAGCTGCTTTCCCGCGAAAATCAACCGCTGCTGGTCTGGTGG 1434 Query 45233 AATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGAC 45292 ||||||||| || || ||||| || || | || | |||||| || ||||| || Sbjct 1435 AATGCCTTCCTTGTCCTGAATCTTAGCCTTAACATTGTCAATGGTGTCCGATGACTCTAC 1494 Query 45293 TTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || | |||| || ||||| ||||| || || ||||| || ||||| Sbjct 1495 CTCTAAGGTAATAGTCTTGCCCGTTAGGGTCTTCACAAAGATCTGCAT 1542 >seq8314 Length=67656 Score = 89.7 bits (98), Expect = 5e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATC-GCT 45172 || || ||||| | | || || || || || || ||||| ||||| || || || ||| Sbjct 25995 CCACCACGGAGACGGAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCT 25936 Query 45173 GACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGG 45232 || || ||| || | || || || ||| | |||||||| |||||||| || || Sbjct 25935 AGCG-TTCGGCCATCCTCGAGCTGCTTACCGGCGAAAATCAATCGCTGCTGGTCTGGTGG 25877 Query 45233 AATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGAC 45292 ||||||||| || |||||||| || || | || | |||||| || ||||| || Sbjct 25876 AATGCCTTCCTTGTCTTGAATCTTAGCCTTAACATTGTCAATGGTGTCTGATGACTCTAC 25817 Query 45293 TTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || | |||| || ||||| || || || || ||||| || ||||| Sbjct 25816 CTCCAAGGTAATAGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 25769 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451739942036240