Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20arcanum_20[genbank_20GCA_5F000612985.1_202014-03-22] 46,594 sequences; 665,186,956 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq4177 129 6e-25 seq21138 116 4e-21 seq2718 113 5e-20 seq29 107 2e-18 seq11273 102 8e-17 seq8313 100 3e-16 seq8314 86.0 6e-12 >seq4177 Length=96264 Score = 129 bits (142), Expect = 6e-25 Identities = 367/558 (66%), Gaps = 12/558 (2%) Strand=Plus/Minus Query 132891 CAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGT 132950 ||| || ||||| || || ||||| || ||||| || ||||| | || || ||| || Sbjct 66965 CAAACACGCAAAATCACAGTGCAAACCTTCGTCTCTTGAAATTAACTCATTTGAGAAGGT 66906 Query 132951 CAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAA 133010 || || ||||| | || |||||||| | ||||||||| | ||| || || || Sbjct 66905 TAATCCAGGCATTAACCCCCGTTTTTTCAACCAAAATATCGAACAGAAGCTTCCGCTGAA 66846 Query 133011 GAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTTTGCT 133070 ||| | || || || || |||||||||| ||||| |||| || ||| | Sbjct 66845 GAAAATCCCTTCAACACAAGCAAAAGCCACCAAACGCTCCGCGAAAGT---TTCAGACCC 66789 Query 133071 GGCGATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTTTCGATGGC 133130 ||||||| || || ||||||| ||||| | || || || || || || || || || Sbjct 66788 ATCGATCCAACGAAGGGCCCATTTCGCCTTCTTTTCAACACAAGGGATTGTCTCAATTGC 66729 Query 133131 GTTCAACAAACGGAGTTTCTCTTCCGAGGAACGCACGTAGGTGTCGATGAGGGTCGAA-- 133188 ||||| | || || || || | ||| | || | || | || Sbjct 66728 ACGGAACAATTTGCTCTTTTCGTCAGAATCCTTGATGTACGACTCCAACAG---CAAACT 66672 Query 133189 -TACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTA-AAAGCACCGCGCCT 133246 ||||| || || || | ||||| ||||||||||| || || || |||||| || |||| Sbjct 66671 GTACATCTCGGAATGGATATTCTCAATGGCGATTTGGAACCCATAGAAAGCA-CGAGCCT 66613 Query 133247 CGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATTTTCGTTGACGATGCCGTCGC 133306 || | ||||| || |||| ||| | | | || || || || |||||||| Sbjct 66612 CGGCAACCTGGACATCTTTCATGAACCTTCCAGCGAGGTTCTCTAAAACTATGCCGTCTG 66553 Query 133307 TGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTCAAGCGCT 133366 |||||| |||||||| || || || |||||||||| | || | | | | | Sbjct 66552 AGGCGGCAAAAAAGGCAAGAACATGAGTGATGAAATGCCTTTCACCGGATGTTAGGTTTT 66493 Query 133367 CCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTCGACGGTCCAAAACGACGCCTCGG 133426 |||||| || || || |||| || || || || || || ||||| || || ||| || Sbjct 66492 CCCAGTGACGAGTATCGGTGGAGAGATCGACTTCTTCTACCGTCCAGAAAGATGCCATGG 66433 Query 133427 CTTTTTTGTACATACTCC 133444 |||| |||||||| |||| Sbjct 66432 CTTTCTTGTACAT-CTCC 66416 >seq21138 Length=28562 Score = 116 bits (128), Expect = 4e-21 Identities = 157/219 (72%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 || ||||| || ||||| ||||| || ||||| || || |||||| | || || ||| | Sbjct 13223 AAGATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACGATCACCCTAGAGGTTGAGTCT 13164 Query 38301 ACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360 |||||| | | | | | |||| || |||| ||||| || || |||||| | ||| Sbjct 13163 TCCGACACCATCGACAATGTCAAAGCCAAGATCCAGGACAAGGAAGGGATTCCCCCAGAC 13104 Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420 || ||||| | |||| ||| || || ||||| || || | || || || ||||||| Sbjct 13103 CAGCAGCGTTTGATTTTCGCCGGAAAGCAGCTTGAGGATGGTCGTACTCTTGCCGACTAC 13044 Query 38421 AACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 |||||||| ||||| | || || ||| | ||||| ||| Sbjct 13043 AACATCCAGAAGGAGTCCACTCTCCATCTCGTGCTCCGT 13005 >seq2718 Length=65933 Score = 113 bits (124), Expect = 5e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || || || || |||||||||||| | || || ||| | || Sbjct 44974 ATGCAGATCTTTGTTAAGACTCTTACCGGGAAAACCATCACCCTGGAGGTTGAGAGCTCC 45033 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | || | || |||| ||||| ||||| || ||| | ||||| Sbjct 45034 GACACCATTGACAATGTCAAGGCCAAGATCCAAGACAAGGAGGGTATCCCCCCAGACCAG 45093 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| || | |||| || ||||| ||||| || || | ||||| | ||||| ||| Sbjct 45094 CAGAGGTTGATTTTTGCTGGCAAGCAGCTCGAGGATGGCCGCACTTTGGCGGACTATAAC 45153 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCT 38455 ||||||||||| |||| ||||| |||||||| Sbjct 45154 ATCCAAAAGGAGTCGACCCTGCACTTGGTGCT 45185 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || ||||| || || || ||||| | || || || | || Sbjct 44746 ATGCAGATTTTTGTTAAGACCCTCACCGGAAAGACTATCACTTTGGAGGTGGAAAGCTCC 44805 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | |||| | || |||| ||||| |||||||||||| | ||||| Sbjct 44806 GACACCATTGATAATGTTAAGGCTAAGATCCAGGACAAGGAGGGAATTCCCCCAGACCAG 44865 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| || | || | ||| || || ||||| || || | |||||||| |||||||||| Sbjct 44866 CAGAGGTTGATCTTCGCTGGTAAGCAGCTCGAGGATGGCCGCACCCTTGCCGACTACAAC 44925 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||| ||||| |||| || || | || || ||| || | || || Sbjct 44926 ATCCAGAAGGAGTCGACCCTTCACCTTGTCCTTCGTCTGCGTGGTGG 44972 Score = 100 bits (110), Expect = 3e-16 Identities = 154/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || || ||||| || || || ||| | || ||||| | | Sbjct 44290 ATGCAGATCTTCGTGAAGACTCTTACGGGTAAGACGATTACCCTTGAGGTCGAAAGCTCA 44349 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || | || |||| || || || || |||||| | ||||| Sbjct 44350 GACACCATTGACAACG-TCAAGGCTAAGATCCAGGATAAGGAAGGCATTCCCCCAGACCA 44408 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| || | || | || || || ||| |||| || | |||||||| |||||||| Sbjct 44409 GCAGAGGTTGATCTTTGCAGGAAAGCAGTTGGAAGATGGCCGCACCCTAGCTGACTACAA 44468 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 |||||| ||||| | || || ||||||||||| ||| Sbjct 44469 CATCCAGAAGGAGTCCACCCTCCATTTGGTGCTCCGT 44505 Score = 87.8 bits (96), Expect = 2e-12 Identities = 151/217 (70%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || ||||| ||||| || || || |||||| | || || || | Sbjct 44062 ATGCAGATCTTTGTGAAAACTCTCACCGGAAAGACTATCACCCTAGAGGTGGAAAGTTCT 44121 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 || | | | |||| |||| | || |||| ||||| || || |||||| | || || Sbjct 44122 GATACAATCGACAACG-TTAAGGCTAAGATCCAGGACAAGGAAGGGATTCCCCCGGATCA 44180 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 || |||| || | ||| || || ||| |||| |||| || || || || ||||| Sbjct 44181 GCAAAGGCTGATCTTCGCCGGAAAGCAGTTGGAGGACGGACGTACTCTAGCTGATTACAA 44240 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 |||||| ||||| | || || ||||||||||| ||| Sbjct 44241 CATCCAGAAGGAGTCTACCCTCCATTTGGTGCTCCGT 44277 Score = 82.4 bits (90), Expect = 8e-11 Identities = 150/217 (69%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || || || || || |||||||| | || || || | || Sbjct 44518 ATGCAGATCTTCGTTAAGACTCTTACCGGAAAGACCATCACTTTGGAGGTGGAAAGCTCC 44577 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || | || |||| || || || || || ||| | ||||| Sbjct 44578 GACACCATTGACAACG-TGAAGGCTAAGATCCAGGATAAGGAAGGGATCCCCCCAGACCA 44636 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| || | || | ||| || || ||||| || || | ||||| || |||||||| Sbjct 44637 GCAGAGGTTGATCTTCGCTGGAAAGCAGCTTGAGGATGGCCGCACTCTGGCTGACTACAA 44696 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 |||||| ||||| | || || ||| | || || ||| Sbjct 44697 CATCCAGAAGGAGTCTACCCTCCATCTTGTCCTCCGT 44733 >seq29 Length=28306 Score = 107 bits (118), Expect = 2e-18 Identities = 154/217 (71%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 ||||||||| ||||| ||||| | || || || ||||||||| | || || || | | Sbjct 27941 AATGCAAATTTTCGTGAAAACTTTGACAGGAAAGACCATCACCCTTGAGGTTGAAAGCTC 28000 Query 38303 CGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | | |||| | || |||| ||||| || || |||||| | ||||| Sbjct 28001 TGACACCATTGACAATGTTAAGGCTAAGATCCAAGACAAGGAAGGCATTCCCCCAGACCA 28060 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 || || | || | |||||||| ||||| || |||| | ||||| || ||||| Sbjct 28061 GCAAAGGTTGATCTTTGCGGGCAAGCAGCTTGAGGACGGCAGGACCCTTGCTGATTACAA 28120 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 |||||| |||||| | || || || |||||||| ||| Sbjct 28121 CATCCAGAAGGAATCAACCCTTCACTTGGTGCTACGT 28157 >seq11273 Length=79338 Score = 102 bits (112), Expect = 8e-17 Identities = 112/149 (75%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 38322 AAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCG 38381 |||| ||| || | ||||| ||||| |||||| | ||||||||||| | || | || Sbjct 32270 AAAGCAAAGATTCAAGACAAGGAGGGTATTCCCCCAGACCAACAGCGTTTGATCTTTGCT 32329 Query 38382 GGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACG 38441 || ||||| || || |||| | | || || |||||||||||||| ||||| | || Sbjct 32330 GGTAAACAACTTGAGGACGGGAGGACTCTTGCAGACTACAACATCCAGAAGGAGTCAACT 32389 Query 38442 CTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 || ||| ||||| ||||||||||||| || Sbjct 32390 CTCCATCTGGTGTTGCGTTTGAGAGGAGG 32418 Score = 98.7 bits (108), Expect = 1e-15 Identities = 111/149 (74%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 38322 AAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCG 38381 |||| ||| || | ||||| ||||| |||||| | ||||||||||| | || | || Sbjct 32498 AAAGCAAAGATTCAAGACAAGGAGGGTATTCCCCCAGACCAACAGCGTTTGATCTTTGCT 32557 Query 38382 GGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACG 38441 || ||||| || || || | | | || || |||||||||||||| ||||| | || Sbjct 32558 GGTAAACAACTTGAGGATGGGAGGACTCTTGCAGACTACAACATCCAGAAGGAGTCAACT 32617 Query 38442 CTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 || ||| ||||| ||||||||||||| || Sbjct 32618 CTCCATCTGGTGTTGCGTTTGAGAGGAGG 32646 Score = 87.8 bits (96), Expect = 2e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| || || ||||| || || || || || || || | || |||||| | | Sbjct 31508 ATGCAAATCTTTGTTAAAACTCTGACCGGAAAGACTATAACTCTTGAGGTCGAGAGCTCA 31567 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | |||| ||||| | ||||| || || |||||| | ||||| Sbjct 31568 GACACCATTGATAATGTCAAAGCTAAAATTCAAGACAAGGAAGGTATTCCCCCAGACCAG 31627 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| |||| || | || || |||||||| || || | || || || || |||||| Sbjct 31628 CAGAGGCTGATCTTTGCTGGGAAACAGCTTGAAGATGGCCGAACACTTGCTGATTACAAC 31687 Query 38424 ATCCAAAAGGA 38434 ||||||||||| Sbjct 31688 ATCCAAAAGGA 31698 >seq8313 Length=21892 Score = 100 bits (110), Expect = 3e-16 Identities = 154/220 (70%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 38240 AAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGC 38299 ||||||||| || || || || || || |||||||| || || ||| | || || ||| | Sbjct 1546 AAAAATGCAGATCTTTGTGAAGACCCTAACGGGCAAGACTATTACCTTAGAGGTAGAGTC 1487 Query 38300 CACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGA 38359 | |||| | | | | |||| | || || | ||||| || || ||||| | || Sbjct 1486 ATCGGACACCATTGACAATGTTAAGGCTAAGATTCAGGACAAGGAAGGCATTCCACCAGA 1427 Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419 ||| |||||| | |||| |||||| || ||||| || || | || || || ||||| Sbjct 1426 CCAGCAGCGGTTGATTTTCGCGGGAAAGCAGCTTGAGGATGGCCGAACGCTAGCTGACTA 1367 Query 38420 CAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 ||||||||| |||||| | || || || | || || ||| Sbjct 1366 CAACATCCAGAAGGAATCCACCCTCCACCTTGTCCTTCGT 1327 >seq8314 Length=67656 Score = 86.0 bits (94), Expect = 6e-12 Identities = 136/195 (70%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 38240 AAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGC 38299 ||||||||| || || || || || || |||||||| || || ||| | || || ||| | Sbjct 25765 AAAAATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACTATTACCTTGGAGGTAGAGTC 25824 Query 38300 CACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGA 38359 | |||| | | | | |||| | || || | ||||| || || ||||| | || Sbjct 25825 ATCAGACACCATTGACAATGTTAAGGCTAAGATTCAAGACAAGGAAGGCATTCCACCAGA 25884 Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419 ||| ||||| | |||| ||| || || ||||| || || | || || || ||||| Sbjct 25885 CCAGCAGCGATTGATTTTCGCCGGTAAGCAGCTCGAGGATGGCCGAACGCTAGCTGACTA 25944 Query 38420 CAACATCCAAAAGGA 38434 ||||||||| ||||| Sbjct 25945 CAACATCCAGAAGGA 25959 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499881486856960