Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20arcanum_20[genbank_20GCA_5F000612985.1_202014-03-22] 46,594 sequences; 665,186,956 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq5004 127 2e-24 seq25728 123 3e-23 seq18349 86.0 7e-12 seq15927 86.0 7e-12 >seq5004 Length=42262 Score = 127 bits (140), Expect = 2e-24 Identities = 196/280 (70%), Gaps = 10/280 (4%) Strand=Plus/Plus Query 9282 AAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGC 9341 || |||||||| || |||||||| || |||||||| || |||| |||||||| | Sbjct 9410 AACCCATCCATTTCAGTCAAAAGCTGATTAATAGTCTGCTCCCTCTCATCATTTCCACCT 9469 Query 9342 ATACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATACAT 9401 | ||| |||| | |||| ||||||| ||||||||||||||||| || |||||||| Sbjct 9470 CCAAGACCTGCACCTCTTTGCCTTCCCACAGCATCAATCTCATCAATAAACACAATACAA 9529 Query 9402 GG-----TTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACAC 9456 || | || ||| || | ||||| | ||| | ||| || || ||||||| Sbjct 9530 GGCGCTTTCGACTTT-----GCCTTCTCAAACAAATCCCTAACTCTAGAAGCTCCCACAC 9584 Query 9457 CAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCAC 9516 | ||||||| ||| ||||| | || || | ||| || || || ||| || |||| Sbjct 9585 CCACAAACAACTCAACAAACTCTGATGCTGCACAAGAGAAAAATGGCACACCAGCCTCAC 9644 Query 9517 CCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 9556 | || | |||| || | ||| ||||| || |||||||| Sbjct 9645 CAGCTACTGCTCTAGCTAAAAGGGTCTTCCCAGTACCTGG 9684 >seq25728 Length=33906 Score = 123 bits (136), Expect = 3e-23 Identities = 305/454 (67%), Gaps = 14/454 (3%) Strand=Plus/Plus Query 9194 ATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCGGC 9253 |||||| || ||||| | || | || ||||| ||||| | ||||| || || || Sbjct 13698 ATCAAATCGTCCTGGCCTCAGCAAAGCAGAGTCAAGAATATCTGCACGATTGGTTGCCGC 13757 Query 9254 GATGACAACAATACCTGT--TTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTA 9311 | || | ||||| || ||| || | ||||||||||| || ||||| |||||||| Sbjct 13758 AACAACTATTATACCAGTATTTCCTT--CGAAACCATCCATTTCAGTCAATAGTTGGTTC 13815 Query 9312 ATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA--CCAGCACTGCGTTGCTTTCCCA 9369 | || ||||||| ||||||||| || | | | | |||| | | |||| || | Sbjct 13816 AGGGTCTGTTCCCTTTCATCATTTCCT--CCTCCAATTCCAGTCCCTCTTTGCCGCCCAA 13873 Query 9370 CGGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAGA 9429 | |||||||| ||||||| || ||||| || || |||||| ||| | | || | Sbjct 13874 CAGCATCAATTTCATCAACAAATACAATGCAAGGAGCATTTTCCTTGGCCTTCTTGAAAA 13933 Query 9430 GATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAAC 9489 |||| || || | ||| || ||||||||||||||||| || || | || | ||| Sbjct 13934 GATCACGGACTCGAGAGGCTCCAACACCAACAAACATCTCAACGAATTCTGAACCTGAA- 13992 Query 9490 ATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCC 9548 |||| || || || ||| | |||||| ||||| || || || | || || || Sbjct 13993 ATTGAGAAAAATGGAACACCCGCTTCACCAGCAATTGCCTTTGCTAGCAAGGTTTTCCCA 14052 Query 9549 GTACCTGGCTTACCCGCGAGGAGGGCACCCCGTGGAATCTTGGCGCCACTTCCAAAGT-- 9606 ||||| || ||| | || || |||| ||||| | | ||| || | ||| Sbjct 14053 GTACCAGGAGGACCAACAAGAAGAACACCTTTTGGAA--TACGAGCCCCTACTGCAGTAA 14110 Query 9607 ATCTCTCAGGTTGCTTGAGAAAATCCACAATCTC 9640 |||||||||||| ||| | ||| || || | ||| Sbjct 14111 ATCTCTCAGGTTTCTTCAAAAATTCTACGACCTC 14144 >seq18349 Length=14259 Score = 86.0 bits (94), Expect = 7e-12 Identities = 104/142 (73%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 106448 ACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTG 106507 ||||| |||||| || ||||| || | |||||| ||||| || ||| | |||| Sbjct 3703 ACATATCGTGGAAGAGCAATTGAGGCAAGATTGCACACAGCAGTTTCAGTAGGACTTGTG 3762 Query 106508 TACTCTAAAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTA 106567 || || | |||||| ||||||||||| ||| ||| || || || | ||||| ||||| Sbjct 3763 TATTCAATAATTTCAGTACACAAGTTAGAAGACTTGATTGTGCCAAGATTCTGCTGGTTG 3822 Query 106568 CTCTTTTTGTTGCACGCATCCT 106589 || ||| |||| || | ||||| Sbjct 3823 CTTTTTCTGTTACAAGTATCCT 3844 >seq15927 Length=13211 Score = 86.0 bits (94), Expect = 7e-12 Identities = 104/142 (73%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 106448 ACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTG 106507 ||||| | || || || ||||| || | |||||||||||| || ||| | ||| Sbjct 2781 ACATATCTAGGTAGAGCAATTGAAGCAAGATTGCAAACAGCAGTTTCAGTTGGACTAGTG 2840 Query 106508 TACTCTAAAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTA 106567 ||||| | ||| |||||||||||||| ||| ||| || || || | ||||| ||||| Sbjct 2841 TACTCAATAATCTCTGTACACAAGTTAGAAGACTTGATAGTGCCAAGATTCTGCTGGTTG 2900 Query 106568 CTCTTTTTGTTGCACGCATCCT 106589 || ||| | ||||| | ||||| Sbjct 2901 CTTTTTCTATTGCAAGAATCCT 2922 Score = 84.2 bits (92), Expect = 3e-11 Identities = 153/224 (68%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 107168 TGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGG 107227 || || ||||| || |||||||| || || ||||| | ||| ||| ||||| | ||| Sbjct 4120 TGAGGCCTTGGAGTGCCAGCATTAAATAGTGTTGGAGATGCATGAGTGAACCAGCGTTGA 4179 Query 107228 GACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGCC 107287 |||||| | |||||| | |||||| ||||| || || |||||| || | | Sbjct 4180 GACATCAAATGATATGTCATGATGACAGATTCAATATCCTCTTTGTGGATTCCAACAGAT 4239 Query 107288 ACACGCATAAACATGTATTGGGGTGTTTCCATGAGGATGCCATCGAGCCGTTGAAGATAG 107347 || | ||| | ||| | ||| || |||||| | | || | | | | ||| || Sbjct 4240 ACTCTCATCAGCATATGTTGTGGCCTTTCCACAATCTTTCCCTGAATCTTTAAAAGGTAA 4299 Query 107348 CTCTTCTCAAGGGTTTTGAGACCAAAGTAACCAAAATCATAGTC 107391 | | ||||||||||||| |||||||||| || | ||| |||| Sbjct 4300 GACCTTTCAAGGGTTTTGAAACCAAAGTAATCATAGTCAAAGTC 4343 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589637180432560