Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20arcanum_20[genbank_20GCA_5F000612985.1_202014-03-22] 46,594 sequences; 665,186,956 total letters Query= NC_015283.1 Length=176428 Score E Sequences producing significant alignments: (Bits) Value seq20339 259 5e-64 seq22815 159 4e-34 seq7295 143 3e-29 seq12053 122 1e-22 seq8506 109 6e-19 seq6133 102 9e-17 seq94 100 3e-16 seq24164 98.7 1e-15 seq6413 95.1 1e-14 >seq20339 Length=39107 Score = 259 bits (286), Expect = 5e-64 Identities = 595/892 (67%), Gaps = 33/892 (4%) Strand=Plus/Plus Query 168591 TTGCATTTATTGCTGCACCACCTGTCGATATCGACGGAATCAGAGAACCTGTAGCAGGTG 168650 |||| || ||||||| || || || || || || || || ||| || | || | Sbjct 1470 TTGCCTTCCTTGCTGCTCCTCCAGTAGACATTGATGGTATTCATGAAACTTTTTCAAGGT 1529 Query 168651 CTCTAATGTATGGAAACAACATCATCTCAGGTGCAGTTGTTCCATCTTCAAACGCAATCG 168710 || | | |||||||||||||| || | ||| || | || |||| | |||| | Sbjct 1530 CTATTCTTTATGGAAACAACATGATTT-----GCACTTCTGCCTACTTCTGCCACAATAG 1584 Query 168711 GTCTACACTTCTACCCAATTTGGGAAGCAGCTACAATCGATGAGTGGTTATATAATGGTG 168770 || |||| || |||||||| ||||||| || | | ||||| |||||||| |||||| Sbjct 1585 GTTTACATTTTTACCCAATCTGGGAAGAGGCATCCGTTGATGAATGGTTATACAATGGTT 1644 Query 168771 GTCCTTACCAGTTGGTAATCTTCCACTTCCTAATCGGAATCTCTGCCTACATGGGTAGAC 168830 | ||||| | | | | | |||||| || | ||| | ||| ||||||||| | Sbjct 1645 GCCCTTATGAACTAATTTTTCTACACTTCTTACTTGGAGTATCTTGTTACATGGGTCGTG 1704 Query 168831 AGTGGGAATTATCATACAGACTAGGTATGAGACCTTGGATCTGTGTTGCTTATTCAGCAC 168890 ||||||| | | | || |||| | ||||| ||| |||||| | |||| | | Sbjct 1705 AGTGGGATCTTAGTTTCCCTCTGGGTACGCCACCTTAGATTGTTGTTGCATGTTCAACTC 1764 Query 168891 CAGTATCTGCAGCATTTGCAGTATTCCTTGTATACCCATTTGGTCAGGGTTCTTTCTCTG 168950 | | | || | | ||| | ||| | | ||||| | ||||| || ||| | | Sbjct 1765 CCATTGCAGCTACTATCGCATTTTTCTTAATCAACCCAATAGGTCAAGGAAGTTTTTTTT 1824 Query 168951 A-TGGTATGCCTCTAGGAATTTCTGGAACATTCAACTTCATGTTCGTATTCCAAGCAGAG 169009 | | |||||||||||||| | || | || ||||| |||||| | ||||| | || Sbjct 1825 AATCGTATGCCTCTAGGATTCGCTAGTACTTTCAATTTCATGATTTTATTCTTGGATGAA 1884 Query 169010 CACAACATTCTTATGCATCCCTTCCATATGGCAGGAGTAGCAGGTATGTTCGGTGGATCT 169069 |||||||| |||||||| | || || || |||||| | || | ||||| || || Sbjct 1885 CACAACATCCTTATGCACCTATTTCACTTGATAGGAGTTGTTGGGGTATTCGGCGGCTCC 1944 Query 169070 CTATTCTCCGCAATGCATGGTTCACTTGTAACATCTTCTCTAATCAGAGAGACTACTGAG 169129 |||||| | ||| || |||| | ||||| ||| | ||||| || | | || Sbjct 1945 CTATTCAGTTCTATGAATATTTCAATGGTAAC-TCTAGTTCGATCAGGGAACCCATAGAA 2003 Query 169130 GAAGAATCTCAGAACTATGGTTACAAGTTCGGTCAAGAAGAAGAAACCTATAATATTGTT 169189 |||||| || | ||||||| || |||||||| |||||||| ||||||| || Sbjct 2004 AGTGAATCTGCTAATGAAGGTTACAGATTGGGTCAAGAGGAAGAAACTTATAATAACGTA 2063 Query 169190 GCAGCACATGGATACTTCGGTAGATTAATCTTCCAGTATGCAAGTTTCAACAACTC-AAG 169248 | | ||||| || || || ||| |||||||| ||||| |||||||||||||| | Sbjct 2064 TCCACTCATGGTTATTTTGGCCGATGGATCTTCCAATATGCTAGTTTCAACAACTCTTAT 2123 Query 169249 AAGTCTTCACTTCTTCCTAGCAGTGTTCCCAGTTGTATGTGTATGGTTAACCTCTATGGG 169308 || | || ||| |||||| | | || || |||||| | | ||| ||| || | || Sbjct 2124 TCGT-TACATTTCATCCTAGTTGCTTGGCCTGTAGTATGTATCTAGTTTACCCCTTTAGG 2182 Query 169309 TATCTGTACAATGGCATTCAACTTGAACGGATTTAACTTTAACCAATCAGTTGTAGATGT 169368 |||| || ||||| || ||| | || | || || || |||||||| || | || Sbjct 2183 TATCAACACTATGGCTTTTAACCTAAATGATTTCAATTTCAACCAATC---TGCA---GT 2236 Query 169369 TAACGGTAAGATCATTCCTACATGGGGTGACGTACTTAACAGAGCAAACCTTGGTATGGA 169428 | || || | |||| | || ||| | | || |||||||||||||| Sbjct 2237 TGACAGTCA---------------GGGTTATATAATTATCTGTGCTAACCTTGGTATGGA 2281 Query 169429 AGTAATGCATGAGCGTAACGCTCACAACTTCCCACTAGACTTAGCATCTGCT 169480 ||| |||||||| ||||| ||||| |||||||| |||||| | ||||||| Sbjct 2282 AGTTATGCATGAACGTAATGCTCATAACTTCCCTCTAGACCT---ATCTGCT 2330 >seq22815 Length=10841 Score = 159 bits (176), Expect = 4e-34 Identities = 198/272 (73%), Gaps = 0/272 (0%) Strand=Plus/Plus Query 168974 GGAACATTCAACTTCATGTTCGTATTCCAAGCAGAGCACAACATTCTTATGCATCCCTTC 169033 || || ||||| |||| | |||||||| | || |||||||| |||||||| || || Sbjct 8713 GGTACTTTCAATGTCATTATTGTATTCCAGGATGACCACAACATCCTTATGCACCCATTT 8772 Query 169034 CATATGGCAGGAGTAGCAGGTATGTTCGGTGGATCTCTATTCTCCGCAATGCATGGTTCA 169093 || || ||| |||| ||| | || || || |||||| || ||||||| ||| Sbjct 8773 CACATCTTAGGCCTAGCTGGTGTAAAAGGCGGCTCCCTATTCAGTGCTATGCATGCTTCC 8832 Query 169094 CTTGTAACATCTTCTCTAATCAGAGAGACTACTGAGGAAGAATCTCAGAACTATGGTTAC 169153 | ||||| |||| | | ||||| || | ||||| | |||||| || | |||||| Sbjct 8833 TTGGTAACTTCTTGTTTGATCAGGGAAAGCACTGAAAATGAATCTGCTAATGAAGGTTAC 8892 Query 169154 AAGTTCGGTCAAGAAGAAGAAACCTATAATATTGTTGCAGCACATGGATACTTCGGTAGA 169213 | ||||||||||| |||||||| || ||||| || || || |||| || | || || Sbjct 8893 AGATTCGGTCAAGAGGAAGAAACTTAGAATATCGTAGCCGCGCATGCTTATATTGGCCGA 8952 Query 169214 TTAATCTTCCAGTATGCAAGTTTCAACAACTC 169245 ||||||||||| ||||| ||||| |||||||| Sbjct 8953 TTAATCTTCCAATATGCTAGTTTYAACAACTC 8984 >seq7295 Length=63598 Score = 143 bits (158), Expect = 3e-29 Identities = 193/269 (72%), Gaps = 0/269 (0%) Strand=Plus/Plus Query 168977 ACATTCAACTTCATGTTCGTATTCCAAGCAGAGCACAACATTCTTATGCATCCCTTCCAT 169036 || ||||| |||||| | ||||| ||||| ||||||||||| |||||||| || || ||| Sbjct 11019 ACTTTCAATTTCATGATTGTATTTCAAGCTGAGCACAACATCCTTATGCACCCATTTCAT 11078 Query 169037 ATGGCAGGAGTAGCAGGTATGTTCGGTGGATCTCTATTCTCCGCAATGCATGGTTCACTT 169096 || ||| || | ||| | ||| |||| ||||| | |||||| ||| | Sbjct 11079 ATCATAGGCCTAACTGGTGTAAAAGGTTGATCCCTATTAAGTTCTATGCATAATTCCTTG 11138 Query 169097 GTAACATCTTCTCTAATCAGAGAGACTACTGAGGAAGAATCTCAGAACTATGGTTACAAG 169156 ||||| ||| | | || || || | || || | |||||| || | ||||||| Sbjct 11139 GTAACTTCTAGTTTGATTAGGGAAAGCACAGAAAATGAATCTGCTAATGAAGGTTACAGA 11198 Query 169157 TTCGGTCAAGAAGAAGAAACCTATAATATTGTTGCAGCACATGGATACTTCGGTAGATTA 169216 || | |||||| |||||||| || |||||| | || || |||| || || || |||| Sbjct 11199 TTTGTTCAAGAGGAAGAAACTTAGAATATTATAGCCGCTCATGCTTATTTTGGACGATTG 11258 Query 169217 ATCTTCCAGTATGCAAGTTTCAACAACTC 169245 |||||||| ||||| |||||||| ||||| Sbjct 11259 ATCTTCCAATATGCTAGTTTCAAAAACTC 11287 Score = 140 bits (154), Expect = 4e-28 Identities = 194/272 (71%), Gaps = 0/272 (0%) Strand=Plus/Plus Query 168974 GGAACATTCAACTTCATGTTCGTATTCCAAGCAGAGCACAACATTCTTATGCATCCCTTC 169033 || || || || ||| || | |||| || || ||||||||||| |||||||| || || Sbjct 43838 GGTACTTTGAATTTCCTGATTTTATTTCAGGCTGAGCACAACATCCTTATGCACCCATTT 43897 Query 169034 CATATGGCAGGAGTAGCAGGTATGTTCGGTGGATCTCTATTCTCCGCAATGCATGGTTCA 169093 || || ||| |||| ||| | |||||||| |||||| || |||||| ||| Sbjct 43898 CACATCTTAGGCCTAGCTGGTGTAAAAGGTGGATCCCTATTCAGTGCTATGCATAATTCC 43957 Query 169094 CTTGTAACATCTTCTCTAATCAGAGAGACTACTGAGGAAGAATCTCAGAACTATGGTTAC 169153 | ||||| ||| | | || || || | || | | |||||| || | ||||| Sbjct 43958 TTGGTAACTTCTAGTTTTATTAGGGAAAGCACAAAAAATGAATCTGCTAATGAAGGTTAA 44017 Query 169154 AAGTTCGGTCAAGAAGAAGAAACCTATAATATTGTTGCAGCACATGGATACTTCGGTAGA 169213 | || | ||||||||||||||| || |||||||| || || |||| || || || || Sbjct 44018 ATATTTGTTCAAGAAGAAGAAACTTAGAATATTGTAGCCGCTCATGCTTATTTTGGACGA 44077 Query 169214 TTAATCTTCCAGTATGCAAGTTTCAACAACTC 169245 || ||||| || ||||| |||||||||||||| Sbjct 44078 TTGATCTTACAATATGCTAGTTTCAACAACTC 44109 >seq12053 Length=52445 Score = 122 bits (134), Expect = 1e-22 Identities = 155/214 (72%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 169256 CACTTCTTCCTAGCAGTGTTCCCAGTTGTATGTGTATGGTTAACCTCTATGGGTATCTGT 169315 |||||||||||||| | | || || ||| || | ||||| | | || | |||||| | Sbjct 51477 CACTTCTTCCTAGCTGCTTGGCCTGTAGTACGTATCTGGTTTATCGCTTTAGGTATCAGC 51418 Query 169316 ACAATGGCATTCAACTTGAACGGATTTAACTTTAACCAATCAGTTGTAGATGTTAACGGT 169375 || ||||| |||||| | || || || | || |||||||| || || || | | ||| Sbjct 51417 ACTATGGCTTTCAACCTAAATGGTTTCAGTTTCAACCAATCTGTAGTTGACAGTCAGGGT 51358 Query 169376 AAGATCATTCCTACATGGGGTGACGTACTTAACAGAGCAAACCTTGGTATGGAAGTAATG 169435 | ||| || |||| ||| | | ||| || ||||||||||||||||| ||| Sbjct 51357 CGTGTAATTAACACTTGGGCTGATATCATCAACCRTGCTAACCTTGGTATGGAAGTTATG 51298 Query 169436 CATGAGCGTAACGCTCACAACTTCCCACTAGACT 169469 ||||| ||||| ||||| |||||||| ||||||| Sbjct 51297 CATGAACGTAATGCTCATAACTTCCCTCTAGACT 51264 >seq8506 Length=47589 Score = 109 bits (120), Expect = 6e-19 Identities = 78/90 (87%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 168943 TTTCTCTGATGGTATGCCTCTAGGAATTTCTGGAACATTCAACTTCATGTTCGTATTCCA 169002 ||| ||||||||||||||||||||||| ||||| || ||||| |||||| | |||||||| Sbjct 40169 TTTTTCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAATTTCATGATTGTATTCCA 40110 Query 169003 AGCAGAGCACAACATTCTTATGCATCCCTT 169032 ||| || |||||||| |||||||| || || Sbjct 40109 AGCTGAACACAACATCCTTATGCACCCATT 40080 >seq6133 Length=71616 Score = 102 bits (112), Expect = 9e-17 Identities = 188/273 (69%), Gaps = 2/273 (1%) Strand=Plus/Plus Query 168974 GGAACATTCAACTTCATGTTCGTATTCCAAGCAGAGCACAACATTCTTATGCATCCCTTC 169033 || || | ||| |||||| | ||||||| || ||| ||||||| |||||||| || || Sbjct 56889 GGTACTTCCAATTTCATGATTCTATTCCAGGCTGAGTACAACATCCTTATGCACCCATTT 56948 Query 169034 CATATGGCAGGAGTAGCAGGTATGTTCGGTGGATCTCTATTCTCCGCAATGCATGGTTCA 169093 || || || |||| || | ||| | || ||||| | | |||||| ||| Sbjct 56949 CACATCTTAGTCCTAGCTTGTGTAAACGGCGTCTCCCTATTAATTGTATTGCATGCTTC- 57007 Query 169094 CTTG-TAACATCTTCTCTAATCAGAGAGACTACTGAGGAAGAATCTCAGAACTATGGTTA 169152 |||| |||| ||| | || || || | || || | |||| | || | ||||| Sbjct 57008 CTTGATAACTTCTAGTTATATAAGGGAAAGCACAGAAAATGAATTTGCTAATGAAGGTTA 57067 Query 169153 CAAGTTCGGTCAAGAAGAAGAAACCTATAATATTGTTGCAGCACATGGATACTTCGGTAG 169212 || ||||||||||| ||||||| || ||||| | || ||| || || || || Sbjct 57068 CAGATTCGGTCAAGAGGAAGAAATATAGAATATCCTAGCTGCATATTCTTATTTTGGCCA 57127 Query 169213 ATTAATCTTCCAGTATGCAAGTTTCAACAACTC 169245 ||| ||||| || ||||| |||||||||||||| Sbjct 57128 ATTGATCTTTCAATATGCTAGTTTCAACAACTC 57160 >seq94 Length=189492 Score = 100 bits (110), Expect = 3e-16 Identities = 136/190 (72%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 169256 CACTTCTTCCTAGCAGTGTTCCCAGTTGTATGTGTATGGTTAACCTCTATGGGTATCTGT 169315 |||||||||| ||| | | || || ||| || | ||||| ||| || | |||||| | Sbjct 88208 CACTTCTTCCGAGCTGCTTGGCCTGTAGTAGGTATCTGGTTTACCGCTTTAGGTATCAGC 88149 Query 169316 ACAATGGCATTCAACTTGAACGGATTTAACTTTAACCAATCAGTTGTAGATGTTAACGGT 169375 || ||||| |||||| | || || || || || |||||||| || || ||| | | || Sbjct 88148 ACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAGTGT 88089 Query 169376 AAGATCATTCCTACATGGGGTGACGTACTTAACAGAGCAAACCTTGGTATGGAAGTAATG 169435 | | ||| || |||| || | | ||| | || ||||||||||||||||| ||| Sbjct 88088 CATGTAATTAACACTTGGGCCGATATCATCAACCGTGCTAACCTTGGTATGGAAGTTATG 88029 Query 169436 CATGAGCGTA 169445 ||||| |||| Sbjct 88028 CATGAACGTA 88019 Score = 95.1 bits (104), Expect = 1e-14 Identities = 135/190 (71%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 169256 CACTTCTTCCTAGCAGTGTTCCCAGTTGTATGTGTATGGTTAACCTCTATGGGTATCTGT 169315 |||||||||| ||| | | || || ||| || | ||||| ||| || | |||||| | Sbjct 81679 CACTTCTTCCGAGCTGCTTGGCCTGTAGTAGGTATCTGGTTTACCGCTTTAGGTATCAGC 81620 Query 169316 ACAATGGCATTCAACTTGAACGGATTTAACTTTAACCAATCAGTTGTAGATGTTAACGGT 169375 || ||||| |||||| | || || || || || |||||||| || || ||| | | || Sbjct 81619 ACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAGTGT 81560 Query 169376 AAGATCATTCCTACATGGGGTGACGTACTTAACAGAGCAAACCTTGGTATGGAAGTAATG 169435 | | ||| || |||| || | | ||| | || ||||||||||| ||||| ||| Sbjct 81559 CATGTAATTAACACTTGGGCCGATATCATCAACCGTGCTAACCTTGGTATTGAAGTTATG 81500 Query 169436 CATGAGCGTA 169445 ||||| |||| Sbjct 81499 CATGAACGTA 81490 >seq24164 Length=10202 Score = 98.7 bits (108), Expect = 1e-15 Identities = 113/152 (74%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 168924 ACCCATTTGGTCAGGGTTCTTTCTCTGATGGTATGCCTCTAGGAATTTCTGGAACATTCA 168983 ||||| | ||| | || ||| ||||||| ||||||||||||| | ||||| || |||| Sbjct 3434 ACCCAATCGGTTAAGGAAGTTTTTCTGATGCTATGCCTCTAGGAGTCTCTGGTACTTTCA 3493 Query 168984 ACTTCATGTTCGTATTCCAAGCAGAGCACAACATTCTTATGCATCCCTTCCATATGGCAG 169043 | |||||| | ||||||| || || |||||||| |||||||| || |||||| || Sbjct 3494 ATTTCATGATTATATTCCAGGCTGAACACAACATCCTTATGCACTTATTTCATATGTTAG 3553 Query 169044 GAGTAGCAGGTATGTTCGGTGGATCTCTATTC 169075 ||| | | | ||||| || || |||||| Sbjct 3554 ATGTATCTAGGGTATTCGGCGGCTCCCTATTC 3585 >seq6413 Length=53986 Score = 95.1 bits (104), Expect = 1e-14 Identities = 144/205 (70%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 169020 TTATGCATCCCTTCCATATGGCAGGAGTAGCAGGTATGTTCGGTGGATCTCTATTCTCCG 169079 ||||||| || || || || ||| |||| ||| | || || || |||||| | Sbjct 29192 TTATGCACCCATTTCACATCTTAGGCCTAGCTGGTGTAAAAGGCGGCTCCCTATTCAGTG 29133 Query 169080 CAATGCATGGTTCACTTGTAACATCTTCTCTAATCAGAGAGACTACTGAGGAAGAATCTC 169139 | ||||||| ||| | ||||| ||| | | ||||| || | || || | |||||| Sbjct 29132 CTATGCATGCTTCCTTGGTAACTTCTAGTTTGATCAGGGAAAGCACAGAAAATGAATCTG 29073 Query 169140 AGAACTATGGTTACAAGTTCGGTCAAGAAGAAGAAACCTATAATATTGTTGCAGCACATG 169199 || | ||||||| ||||||||||| |||||||| || ||||| || || || |||| Sbjct 29072 CTAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAACTTAGAATATCGTAGCCGCTCATG 29013 Query 169200 GATACTTCGGTAGATTAATCTTCCA 169224 || || || |||| |||||||| Sbjct 29012 CTTATTTTGGCCGATTGATCTTCCA 28988 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 564112855101120