Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20arcanum_20[genbank_20GCA_5F000612985.1_202014-03-22] 46,594 sequences; 665,186,956 total letters Query= NC_015287.1 Length=232878 Score E Sequences producing significant alignments: (Bits) Value seq20339 212 9e-50 seq22815 159 5e-34 seq7295 122 1e-22 seq6133 116 6e-21 seq24164 114 2e-20 seq12053 109 8e-19 seq6413 105 1e-17 seq8506 100 4e-16 seq94 89.7 8e-13 >seq20339 Length=39107 Score = 212 bits (234), Expect = 9e-50 Identities = 584/887 (66%), Gaps = 30/887 (3%) Strand=Plus/Plus Query 215396 GCATTCATCGCTGCACCTCCTGTCGATATCGACGGAATCAGAGAGCCAGTTGCTGGTTCT 215455 || ||| | ||||| ||||| || || || || || || || | || | | ||| Sbjct 1472 GCCTTCCTTGCTGCTCCTCCAGTAGACATTGATGGTATTCATGAAACTTTTTCAAGGTCT 1531 Query 215456 TTAATGTATGGTAACAACATCATCTCTGGTGCTGTTGTACCTAGTTCAAACGCAATCGGA 215515 | | ||||| |||||||| || | || || | |||| ||| | |||| || Sbjct 1532 ATTCTTTATGGAAACAACATGATTT-----GCACTTCTGCCTACTTCTGCCACAATAGGT 1586 Query 215516 TTACACTTCTACCCTATCTGGGAAGCAGCAACAGTTGACGAATGGCTCTACAATGGTGGA 215575 ||||| || ||||| |||||||||| ||| | ||||| |||||| | ||||||||| | Sbjct 1587 TTACATTTTTACCCAATCTGGGAAGAGGCATCCGTTGATGAATGGTTATACAATGGTTGC 1646 Query 215576 CCTTTCCAACTGGTTATCTTCCACTTCCTCATTGGTATTTCTGCATACTGCGGAAGACAG 215635 |||| |||| || | | |||||| | |||| | ||| ||| || | || Sbjct 1647 CCTTATGAACTAATTTTTCTACACTTCTTACTTGGAGTATCTTGTTACATGGGTCGTGAG 1706 Query 215636 TGGGAACTTTCTTACAGATTAGGTATGAGACCTTGGATCTGTGTTGCTTACTCCGCACCT 215695 ||||| ||| || | | |||| | ||||| ||| |||||| | || | || Sbjct 1707 TGGGATCTTAGTTTCCCTCTGGGTACGCCACCTTAGATTGTTGTTGCATGTTCAACTCCC 1766 Query 215696 GTATCTGCTGCCTTTGCAGTATTCCTTGTGTATCCATTCGGTCAGGGTTCTTTCTCTGAT 215755 | | ||| | | ||| | ||| | | | ||| | ||||| || ||| | | | Sbjct 1767 ATTGCAGCTACTATCGCATTTTTCTTAATCAACCCAATAGGTCAAGGAAGTTTTTTTTAA 1826 Query 215756 GC-TATGCCACTTGGAATCTCTGGAACATTCAACTACATGTTTGTTTTCCAGGCTGAGCA 215814 | |||||| || ||| || || | || ||||| | |||| || | ||| || ||| || Sbjct 1827 TCGTATGCCTCTAGGATTCGCTAGTACTTTCAATTTCATGATTTTATTCTTGGATGAACA 1886 Query 215815 CAACATTCTGATGCACCCATTCCACATGTTAGGTGTGGCTGGTGTCTTCGGTGGTTCATT 215874 |||||| || ||||||| ||| ||| || |||| || | ||| || ||||| || || | Sbjct 1887 CAACATCCTTATGCACCTATTTCACTTGATAGGAGTTGTTGGGGTATTCGGCGGCTCCCT 1946 Query 215875 GTTCTCTGCAATGCACGGTTCACTTGTTACATCTTCTCTAATCAGAGAGACAACTGAGCA 215934 ||| | | ||| | |||| | || || ||| | ||||| || | | || Sbjct 1947 ATTCAGTTCTATGAATATTTCAATGGTAAC-TCTAGTTCGATCAGGGAACCCATAGAAAG 2005 Query 215935 AGAATCTCAGAACTACGGTTACAAGTTCGGACAAGAGGAGGAAACATACAACATCGTAGC 215994 |||||| || | ||||||| || || |||||||| ||||| || || | |||| | Sbjct 2006 TGAATCTGCTAATGAAGGTTACAGATTGGGTCAAGAGGAAGAAACTTATAATAACGTATC 2065 Query 215995 TGCACACGGTTACTTTGGTCGCCTCATCTTCCAATACGCATCTTTCAACAACTC-AAGAA 216053 | || ||||| ||||| || ||||||||||| || |||||||||||| | Sbjct 2066 CACTCATGGTTATTTTGGCCGATGGATCTTCCAATATGCTAGTTTCAACAACTCTTATTC 2125 Query 216054 GTCTTCACTTCTTCCTTGCAGCATTCCCTGTTATTTGTATCTGGGCAACTGCAATGGGTG 216113 || | || ||| |||| | || | ||||| | ||||||| | || | | ||| Sbjct 2126 GT-TACATTTCATCCTAGTTGCTTGGCCTGTAGTATGTATCTAGTTTACCCCTTTAGGTA 2184 Query 216114 TCTCAACTATGGCGTTCAACCTTAACGGTTTCAACTTCAACCAGTCTGTCGTAGACGCAT 216173 || |||||||| || ||||| || | |||||| |||||||| |||| || ||| | Sbjct 2185 TCAACACTATGGCTTTTAACCTAAATGATTTCAATTTCAACCAATCTGCAGTTGAC-AGT 2243 Query 216174 CTGGTAAAGTTATTCCTACTTGGGCAGACGTTCTTAACAGAGCAGGACTTGGTATGGAAG 216233 | || ||||| || || | || | |||| ||||||||||||| Sbjct 2244 CAGG----GTTAT--ATAATT----ATCTGTGC-TAAC---------CTTGGTATGGAAG 2283 Query 216234 TAATGCACGAGCGTAACGCTCACAACTTCCCATTAGACTTGGCTGCT 216280 | ||||| || ||||| ||||| |||||||| ||||| | ||||| Sbjct 2284 TTATGCATGAACGTAATGCTCATAACTTCCCTCTAGACCTATCTGCT 2330 >seq22815 Length=10841 Score = 159 bits (176), Expect = 5e-34 Identities = 198/272 (73%), Gaps = 0/272 (0%) Strand=Plus/Plus Query 215777 GGAACATTCAACTACATGTTTGTTTTCCAGGCTGAGCACAACATTCTGATGCACCCATTC 215836 || || ||||| ||| |||| ||||||| ||| |||||||| || ||||||||||| Sbjct 8713 GGTACTTTCAATGTCATTATTGTATTCCAGGATGACCACAACATCCTTATGCACCCATTT 8772 Query 215837 CACATGTTAGGTGTGGCTGGTGTCTTCGGTGGTTCATTGTTCTCTGCAATGCACGGTTCA 215896 ||||| ||||| | |||||||| || || || | ||| ||| ||||| | ||| Sbjct 8773 CACATCTTAGGCCTAGCTGGTGTAAAAGGCGGCTCCCTATTCAGTGCTATGCATGCTTCC 8832 Query 215897 CTTGTTACATCTTCTCTAATCAGAGAGACAACTGAGCAAGAATCTCAGAACTACGGTTAC 215956 | || || |||| | | ||||| || | ||||| | |||||| || | |||||| Sbjct 8833 TTGGTAACTTCTTGTTTGATCAGGGAAAGCACTGAAAATGAATCTGCTAATGAAGGTTAC 8892 Query 215957 AAGTTCGGACAAGAGGAGGAAACATACAACATCGTAGCTGCACACGGTTACTTTGGTCGC 216016 | ||||| |||||||| ||||| || || |||||||| || || | ||| |||| || Sbjct 8893 AGATTCGGTCAAGAGGAAGAAACTTAGAATATCGTAGCCGCGCATGCTTATATTGGCCGA 8952 Query 216017 CTCATCTTCCAATACGCATCTTTCAACAACTC 216048 | ||||||||||| || ||| |||||||| Sbjct 8953 TTAATCTTCCAATATGCTAGTTTYAACAACTC 8984 >seq7295 Length=63598 Score = 122 bits (134), Expect = 1e-22 Identities = 190/272 (70%), Gaps = 0/272 (0%) Strand=Plus/Plus Query 215777 GGAACATTCAACTACATGTTTGTTTTCCAGGCTGAGCACAACATTCTGATGCACCCATTC 215836 || || || || | | || || | || ||||||||||||||||| || ||||||||||| Sbjct 43838 GGTACTTTGAATTTCCTGATTTTATTTCAGGCTGAGCACAACATCCTTATGCACCCATTT 43897 Query 215837 CACATGTTAGGTGTGGCTGGTGTCTTCGGTGGTTCATTGTTCTCTGCAATGCACGGTTCA 215896 ||||| ||||| | |||||||| ||||| || | ||| ||| ||||| ||| Sbjct 43898 CACATCTTAGGCCTAGCTGGTGTAAAAGGTGGATCCCTATTCAGTGCTATGCATAATTCC 43957 Query 215897 CTTGTTACATCTTCTCTAATCAGAGAGACAACTGAGCAAGAATCTCAGAACTACGGTTAC 215956 | || || ||| | | || || || | || | | |||||| || | ||||| Sbjct 43958 TTGGTAACTTCTAGTTTTATTAGGGAAAGCACAAAAAATGAATCTGCTAATGAAGGTTAA 44017 Query 215957 AAGTTCGGACAAGAGGAGGAAACATACAACATCGTAGCTGCACACGGTTACTTTGGTCGC 216016 | || | ||||| || ||||| || || || ||||| || || | ||| ||||| || Sbjct 44018 ATATTTGTTCAAGAAGAAGAAACTTAGAATATTGTAGCCGCTCATGCTTATTTTGGACGA 44077 Query 216017 CTCATCTTCCAATACGCATCTTTCAACAACTC 216048 | ||||| ||||| || |||||||||||| Sbjct 44078 TTGATCTTACAATATGCTAGTTTCAACAACTC 44109 Score = 111 bits (122), Expect = 2e-19 Identities = 186/269 (69%), Gaps = 0/269 (0%) Strand=Plus/Plus Query 215780 ACATTCAACTACATGTTTGTTTTCCAGGCTGAGCACAACATTCTGATGCACCCATTCCAC 215839 || ||||| | |||| |||| || || |||||||||||||| || ||||||||||| || Sbjct 11019 ACTTTCAATTTCATGATTGTATTTCAAGCTGAGCACAACATCCTTATGCACCCATTTCAT 11078 Query 215840 ATGTTAGGTGTGGCTGGTGTCTTCGGTGGTTCATTGTTCTCTGCAATGCACGGTTCACTT 215899 || |||| | ||||||| ||| | || | || | | ||||| ||| | Sbjct 11079 ATCATAGGCCTAACTGGTGTAAAAGGTTGATCCCTATTAAGTTCTATGCATAATTCCTTG 11138 Query 215900 GTTACATCTTCTCTAATCAGAGAGACAACTGAGCAAGAATCTCAGAACTACGGTTACAAG 215959 || || ||| | | || || || | || || | |||||| || | ||||||| Sbjct 11139 GTAACTTCTAGTTTGATTAGGGAAAGCACAGAAAATGAATCTGCTAATGAAGGTTACAGA 11198 Query 215960 TTCGGACAAGAGGAGGAAACATACAACATCGTAGCTGCACACGGTTACTTTGGTCGCCTC 216019 || | |||||||| ||||| || || || |||| || || | ||| ||||| || | Sbjct 11199 TTTGTTCAAGAGGAAGAAACTTAGAATATTATAGCCGCTCATGCTTATTTTGGACGATTG 11258 Query 216020 ATCTTCCAATACGCATCTTTCAACAACTC 216048 ||||||||||| || |||||| ||||| Sbjct 11259 ATCTTCCAATATGCTAGTTTCAAAAACTC 11287 >seq6133 Length=71616 Score = 116 bits (128), Expect = 6e-21 Identities = 191/273 (70%), Gaps = 2/273 (1%) Strand=Plus/Plus Query 215777 GGAACATTCAACTACATGTTTGTTTTCCAGGCTGAGCACAACATTCTGATGCACCCATTC 215836 || || | ||| | |||| || | |||||||||||| ||||||| || ||||||||||| Sbjct 56889 GGTACTTCCAATTTCATGATTCTATTCCAGGCTGAGTACAACATCCTTATGCACCCATTT 56948 Query 215837 CACATGTTAGGTGTGGCTGGTGTCTTCGGTGGTTCATTGTTCTCTGCAATGCACGGTTCA 215896 ||||| |||| | ||| |||| ||| | || | || || | |||| | ||| Sbjct 56949 CACATCTTAGTCCTAGCTTGTGTAAACGGCGTCTCCCTATTAATTGTATTGCATGCTTC- 57007 Query 215897 CTTGTTA-CATCTTCTCTAATCAGAGAGACAACTGAGCAAGAATCTCAGAACTACGGTTA 215955 |||| || | ||| | || || || | || || | |||| | || | ||||| Sbjct 57008 CTTGATAACTTCTAGTTATATAAGGGAAAGCACAGAAAATGAATTTGCTAATGAAGGTTA 57067 Query 215956 CAAGTTCGGACAAGAGGAGGAAACATACAACATCGTAGCTGCACACGGTTACTTTGGTCG 216015 || ||||| |||||||| |||| ||| || ||| |||||||| | ||| ||||| | Sbjct 57068 CAGATTCGGTCAAGAGGAAGAAATATAGAATATCCTAGCTGCATATTCTTATTTTGGCCA 57127 Query 216016 CCTCATCTTCCAATACGCATCTTTCAACAACTC 216048 | ||||| ||||| || |||||||||||| Sbjct 57128 ATTGATCTTTCAATATGCTAGTTTCAACAACTC 57160 >seq24164 Length=10202 Score = 114 bits (126), Expect = 2e-20 Identities = 111/143 (78%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 215729 CCATTCGGTCAGGGTTCTTTCTCTGATGCTATGCCACTTGGAATCTCTGGAACATTCAAC 215788 ||| ||||| | || ||| |||||||||||||| || ||| ||||||| || ||||| Sbjct 3436 CCAATCGGTTAAGGAAGTTTTTCTGATGCTATGCCTCTAGGAGTCTCTGGTACTTTCAAT 3495 Query 215789 TACATGTTTGTTTTCCAGGCTGAGCACAACATTCTGATGCACCCATTCCACATGTTAGGT 215848 | |||| || | ||||||||||| |||||||| || |||||| ||| || ||||||| | Sbjct 3496 TTCATGATTATATTCCAGGCTGAACACAACATCCTTATGCACTTATTTCATATGTTAGAT 3555 Query 215849 GTGGCTGGTGTCTTCGGTGGTTC 215871 || || | || ||||| || || Sbjct 3556 GTATCTAGGGTATTCGGCGGCTC 3578 >seq12053 Length=52445 Score = 109 bits (120), Expect = 8e-19 Identities = 154/217 (71%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 216059 CACTTCTTCCTTGCAGCATTCCCTGTTATTTGTATCTGGGCAACTGCAATGGGTGTCTCA 216118 ||||||||||| || || | ||||| | |||||||| | || | ||| || Sbjct 51477 CACTTCTTCCTAGCTGCTTGGCCTGTAGTACGTATCTGGTTTATCGCTTTAGGTATCAGC 51418 Query 216119 ACTATGGCGTTCAACCTTAACGGTTTCAACTTCAACCAGTCTGTCGTAGACGCATCTGGT 216178 |||||||| |||||||| || ||||||| |||||||| ||||| || ||| ||| Sbjct 51417 ACTATGGCTTTCAACCTAAATGGTTTCAGTTTCAACCAATCTGTAGTTGACAGTCAGGGT 51358 Query 216179 AAAGTTATTCCTACTTGGGCAGACGTTCTTAACAGAGCAGGACTTGGTATGGAAGTAATG 216238 || ||| |||||||| || | | ||| || |||||||||||||| ||| Sbjct 51357 CGTGTAATTAACACTTGGGCTGATATCATCAACCRTGCTAACCTTGGTATGGAAGTTATG 51298 Query 216239 CACGAGCGTAACGCTCACAACTTCCCATTAGACTTGG 216275 || || ||||| ||||| |||||||| |||||| || Sbjct 51297 CATGAACGTAATGCTCATAACTTCCCTCTAGACTAGG 51261 >seq6413 Length=53986 Score = 105 bits (116), Expect = 1e-17 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 215825 ATGCACCCATTCCACATGTTAGGTGTGGCTGGTGTCTTCGGTGGTTCATTGTTCTCTGCA 215884 ||||||||||| ||||| ||||| | |||||||| || || || | ||| ||| Sbjct 29190 ATGCACCCATTTCACATCTTAGGCCTAGCTGGTGTAAAAGGCGGCTCCCTATTCAGTGCT 29131 Query 215885 ATGCACGGTTCACTTGTTACATCTTCTCTAATCAGAGAGACAACTGAGCAAGAATCTCAG 215944 ||||| | ||| | || || ||| | | ||||| || | || || | |||||| Sbjct 29130 ATGCATGCTTCCTTGGTAACTTCTAGTTTGATCAGGGAAAGCACAGAAAATGAATCTGCT 29071 Query 215945 AACTACGGTTACAAGTTCGGACAAGAGGAGGAAACATACAACATCGTAGCTGCACACGGT 216004 || | ||||||| ||||| |||||||| ||||| || || |||||||| || || | | Sbjct 29070 AATGAAGGTTACAGATTCGGTCAAGAGGAAGAAACTTAGAATATCGTAGCCGCTCATGCT 29011 Query 216005 TACTTTGGTCGCCTCATCTTCCA 216027 || ||||| || | |||||||| Sbjct 29010 TATTTTGGCCGATTGATCTTCCA 28988 >seq8506 Length=47589 Score = 100 bits (110), Expect = 4e-16 Identities = 76/90 (84%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 215746 TTTCTCTGATGCTATGCCACTTGGAATCTCTGGAACATTCAACTACATGTTTGTTTTCCA 215805 ||| ||||||| |||||| || ||||||||||| || ||||| | |||| |||| ||||| Sbjct 40169 TTTTTCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAATTTCATGATTGTATTCCA 40110 Query 215806 GGCTGAGCACAACATTCTGATGCACCCATT 215835 ||||| |||||||| || ||||||||||| Sbjct 40109 AGCTGAACACAACATCCTTATGCACCCATT 40080 >seq94 Length=189492 Score = 89.7 bits (98), Expect = 8e-13 Identities = 136/191 (71%), Gaps = 2/191 (1%) Strand=Plus/Minus Query 216059 CACTTCTTCCTTGCAGCATTCCCTGTTATTTGTATCTGGGCAACTGCAATGGGTGTCTCA 216118 |||||||||| || || | ||||| | |||||||| || || | ||| || Sbjct 88208 CACTTCTTCCGAGCTGCTTGGCCTGTAGTAGGTATCTGGTTTACCGCTTTAGGTATCAGC 88149 Query 216119 ACTATGGCGTTCAACCTTAACGGTTTCAACTTCAACCAGTCTGTCGTAGACGCATCTG-G 216177 |||||||| |||||||| || |||||||| |||||||| ||||| || || || | | Sbjct 88148 ACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAG-TCAGTG 88090 Query 216178 TAAAGTTATTCCTACTTGGGCAGACGTTCTTAACAGAGCAGGACTTGGTATGGAAGTAAT 216237 | | || ||| |||||||| || | | ||| | || |||||||||||||| || Sbjct 88089 TCATGTAATTAACACTTGGGCCGATATCATCAACCGTGCTAACCTTGGTATGGAAGTTAT 88030 Query 216238 GCACGAGCGTA 216248 ||| || |||| Sbjct 88029 GCATGAACGTA 88019 Score = 87.8 bits (96), Expect = 3e-12 Identities = 132/186 (71%), Gaps = 9/186 (5%) Strand=Plus/Minus Query 215822 CTGATGCACCCATTCCACATGTTAGGTGTGGCTGGTGTCTTCGGTGGTTCATTGTTCTCT 215881 || ||||||||||| ||||||||| ||||| || || ||||| | || ||| | Sbjct 81855 CTTATGCACCCATTTCACATGTTA------GCTGGGGTATTAGGTGGCTTCTTATTCAGT 81802 Query 215882 GCAATGCACGGTTCACTTGTTACATCTTCTCTAATCAGAGAGACAACTGAGCAAGAATCT 215941 || ||||| |||| | || || ||| | ||||| || || || || | |||||| Sbjct 81801 GCTATGCATTGTTCCTTGGTAACTTCTAGTTCGATCAGGGAAACCAC--AGAATGAATCT 81744 Query 215942 CAGAACTACGGTTACAAGTTCGGACAAGAGGAGGAAACATACAACATCGTAGCTGCACAC 216001 || | |||||||| ||||| | |||||| ||||| || || ||| |||| || || Sbjct 81743 GCTAATGAAGGTTACAAATTCGGTC-AGAGGAAGAAACTTATAATATCATAGCCGCTCAG 81685 Query 216002 GGTTAC 216007 |||||| Sbjct 81684 GGTTAC 81679 Score = 87.8 bits (96), Expect = 3e-12 Identities = 132/186 (71%), Gaps = 9/186 (5%) Strand=Plus/Minus Query 215822 CTGATGCACCCATTCCACATGTTAGGTGTGGCTGGTGTCTTCGGTGGTTCATTGTTCTCT 215881 || ||||||||||| ||||||||| ||||| || || ||||| | || ||| | Sbjct 88384 CTTATGCACCCATTTCACATGTTA------GCTGGGGTATTAGGTGGCTTCTTATTCAGT 88331 Query 215882 GCAATGCACGGTTCACTTGTTACATCTTCTCTAATCAGAGAGACAACTGAGCAAGAATCT 215941 || ||||| |||| | || || ||| | ||||| || || || || | |||||| Sbjct 88330 GCTATGCATTGTTCCTTGGTAACTTCTAGTTCGATCAGGGAAACCAC--AGAATGAATCT 88273 Query 215942 CAGAACTACGGTTACAAGTTCGGACAAGAGGAGGAAACATACAACATCGTAGCTGCACAC 216001 || | |||||||| ||||| | |||||| ||||| || || ||| |||| || || Sbjct 88272 GCTAATGAAGGTTACAAATTCGGTC-AGAGGAAGAAACTTATAATATCATAGCCGCTCAG 88214 Query 216002 GGTTAC 216007 |||||| Sbjct 88213 GGTTAC 88208 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 744647645849120