Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20arcanum_20[genbank_20GCA_5F000612985.1_202014-03-22] 46,594 sequences; 665,186,956 total letters Query= NC_015290.1 Length=182180 Score E Sequences producing significant alignments: (Bits) Value seq20339 246 4e-60 seq22815 131 2e-25 seq7295 120 4e-22 seq12053 118 1e-21 seq94 107 2e-18 seq8506 100 3e-16 seq24164 86.0 7e-12 seq6413 82.4 9e-11 >seq20339 Length=39107 Score = 246 bits (272), Expect = 4e-60 Identities = 589/883 (67%), Gaps = 36/883 (4%) Strand=Plus/Plus Query 169790 TTGCTTTCATCGCAGCTCCACCTGTGGACATCGATGGAATCAGAGAACCTGTAGCAGGTT 169849 |||| ||| | || ||||| || || ||||| ||||| || ||| || | || | | Sbjct 1470 TTGCCTTCCTTGCTGCTCCTCCAGTAGACATTGATGGTATTCATGAAACTTTTTCAAGGT 1529 Query 169850 C-ATTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCTTCAAACGCAATC 169908 | |||| | ||||| |||||||| || | ||| || | || |||| | |||| Sbjct 1530 CTATTCTT-TATGGAAACAACATGATTT-----GCACTTCTGCCTACTTCTGCCACAATA 1583 Query 169909 GGTCTCCACTTCTATCCTATTTGGGAAGCAGCAACTCTAGATGAGTGGTTGTATAACGGT 169968 ||| | || || || || || ||||||| ||| | | ||||| ||||| || || ||| Sbjct 1584 GGTTTACATTTTTACCCAATCTGGGAAGAGGCATCCGTTGATGAATGGTTATACAATGGT 1643 Query 169969 GGTCCTTATCAATTAGTTATCTTCCACTTCCTTATCGGAATCTCTGCCTACATGGGTAGA 170028 | |||||| || || || | | |||||| | | ||| | ||| ||||||||| | Sbjct 1644 TGCCCTTATGAACTAATTTTTCTACACTTCTTACTTGGAGTATCTTGTTACATGGGTCGT 1703 Query 170029 CAGTGGGAACTATCATACCGTTTAGGTATGCGTCCTTGGATCTGTGTAGCATATTCTGCT 170088 ||||||| || | || | | |||| || |||| ||| ||| |||| ||| || Sbjct 1704 GAGTGGGATCTTAGTTTCCCTCTGGGTACGCCACCTTAGATTGTTGTTGCATGTTCAACT 1763 Query 170089 CCAGTGTCAGCAGCATTCGCTGTATTCTTAGTGTATCCTTTCGGTCAGGGA--TCTTTCT 170146 || | |||| | |||| | |||||| | | || | ||||| ||| | ||| | Sbjct 1764 CCCATTGCAGCTACTATCGCATTTTTCTTAATCAACCCAATAGGTCAAGGAAGTTTTTTT 1823 Query 170147 CAGACGGAATGCCTCTAGGTATCTCAGGTACATTTAACTTCATGTTCGTATTCCAAGCAG 170206 | || | |||||||||| || | |||| || || |||||| | ||||| | | Sbjct 1824 TAATCGTA-TGCCTCTAGGATTCGCTAGTACTTTCAATTTCATGATTTTATTCTTGGATG 1882 Query 170207 AGCACAACATTCTTATGCACCCATTCCATATGGCAGGGGTTGCTGGTATGTTCGGAGGAG 170266 | |||||||| |||||||||| ||| || || ||| |||| ||| | ||||| || Sbjct 1883 AACACAACATCCTTATGCACCTATTTCACTTGATAGGAGTTGTTGGGGTATTCGGCGGCT 1942 Query 170267 CACTCTTCTCAGCAATGCACGGTTCACTTGTAACATCTTCTCTAATCAGAGAGACAACAG 170326 | || ||| | ||| | |||| | ||||| ||| | ||||| || | | || Sbjct 1943 CCCTATTCAGTTCTATGAATATTTCAATGGTAAC-TCTAGTTCGATCAGGGAACCCATAG 2001 Query 170327 ATAACGAGTCACAGAACTATGGATACAAATTCGGACAAGAAGAAGAAACATACAACATTG 170386 | | || || || | || |||| ||| || ||||| |||||||| || || | | Sbjct 2002 AAAGTGAATCTGCTAATGAAGGTTACAGATTGGGTCAAGAGGAAGAAACTTATAATAACG 2061 Query 170387 TTGCAGCACATGGATACTTTGGTAGACTTATCTTCCAATATGCTAGCTTTAACAATAGTC 170446 | | | ||||| || ||||| || ||||||||||||||||| || |||| | || Sbjct 2062 TATCCACTCATGGTTATTTTGGCCGATGGATCTTCCAATATGCTAGTTTCAACA--ACTC 2119 Query 170447 GTAGTC--TTCACTTCTTCCTTGCTACATTCCCTGTAGTATGCATCTGGTTAACTTCAAT 170504 || || | || ||| |||| | | | | ||||||||||| |||| ||| || | | Sbjct 2120 TTATTCGTTACATTTCATCCTAGTTGCTTGGCCTGTAGTATGTATCTAGTTTACCCCTTT 2179 Query 170505 GGGTATTTGCACAATGGCATTTAACCTTAATGGATTTAACTTCAACCAGTCAATCGTAGA 170564 ||||| ||| ||||| |||||||| |||| || || |||||||| || | || Sbjct 2180 AGGTATCAACACTATGGCTTTTAACCTAAATGATTTCAATTTCAACCAATC---TGCAGT 2236 Query 170565 TGGATCTGGTAAAGTAGTTCCTACATGGGCAGACGTTCTTAACAGAGCAAACCTAGGTAT 170624 || | ||| || || | | | ||| | | || ||||| ||||| Sbjct 2237 TG--------ACAGT--------CAGGGTTATA--TAATTATCTGTGCTAACCTTGGTAT 2278 Query 170625 GGAAGTAATGCATGAGCGTAATGCACACAACTTCCCACTTGAC 170667 |||||| |||||||| |||||||| || |||||||| || ||| Sbjct 2279 GGAAGTTATGCATGAACGTAATGCTCATAACTTCCCTCTAGAC 2321 >seq22815 Length=10841 Score = 131 bits (144), Expect = 2e-25 Identities = 190/269 (71%), Gaps = 0/269 (0%) Strand=Plus/Plus Query 170173 GGTACATTTAACTTCATGTTCGTATTCCAAGCAGAGCACAACATTCTTATGCACCCATTC 170232 ||||| || || |||| | |||||||| | || |||||||| |||||||||||||| Sbjct 8713 GGTACTTTCAATGTCATTATTGTATTCCAGGATGACCACAACATCCTTATGCACCCATTT 8772 Query 170233 CATATGGCAGGGGTTGCTGGTATGTTCGGAGGAGCACTCTTCTCAGCAATGCACGGTTCA 170292 || || ||| | |||||| | || || | || ||| || ||||| | ||| Sbjct 8773 CACATCTTAGGCCTAGCTGGTGTAAAAGGCGGCTCCCTATTCAGTGCTATGCATGCTTCC 8832 Query 170293 CTTGTAACATCTTCTCTAATCAGAGAGACAACAGATAACGAGTCACAGAACTATGGATAC 170352 | ||||| |||| | | ||||| || | || || || || || || | || ||| Sbjct 8833 TTGGTAACTTCTTGTTTGATCAGGGAAAGCACTGAAAATGAATCTGCTAATGAAGGTTAC 8892 Query 170353 AAATTCGGACAAGAAGAAGAAACATACAACATTGTTGCAGCACATGGATACTTTGGTAGA 170412 | |||||| ||||| |||||||| || || || || || || |||| || |||| || Sbjct 8893 AGATTCGGTCAAGAGGAAGAAACTTAGAATATCGTAGCCGCGCATGCTTATATTGGCCGA 8952 Query 170413 CTTATCTTCCAATATGCTAGCTTTAACAA 170441 | ||||||||||||||||| || ||||| Sbjct 8953 TTAATCTTCCAATATGCTAGTTTYAACAA 8981 >seq7295 Length=63598 Score = 120 bits (132), Expect = 4e-22 Identities = 191/273 (70%), Gaps = 1/273 (0%) Strand=Plus/Plus Query 170169 CTCAGGTACATTTAACTTCATGTTCGTATTCCAAGCAGAGCACAACATTCTTATGCACCC 170228 ||||| ||| || || |||||| | ||||| ||||| ||||||||||| ||||||||||| Sbjct 11013 CTCAG-TACTTTCAATTTCATGATTGTATTTCAAGCTGAGCACAACATCCTTATGCACCC 11071 Query 170229 ATTCCATATGGCAGGGGTTGCTGGTATGTTCGGAGGAGCACTCTTCTCAGCAATGCACGG 170288 ||| ||||| ||| | ||||| | || || | || || | ||||| Sbjct 11072 ATTTCATATCATAGGCCTAACTGGTGTAAAAGGTTGATCCCTATTAAGTTCTATGCATAA 11131 Query 170289 TTCACTTGTAACATCTTCTCTAATCAGAGAGACAACAGATAACGAGTCACAGAACTATGG 170348 ||| | ||||| ||| | | || || || | ||||| || || || || | || Sbjct 11132 TTCCTTGGTAACTTCTAGTTTGATTAGGGAAAGCACAGAAAATGAATCTGCTAATGAAGG 11191 Query 170349 ATACAAATTCGGACAAGAAGAAGAAACATACAACATTGTTGCAGCACATGGATACTTTGG 170408 |||| ||| | ||||| |||||||| || || ||| | || || |||| || ||||| Sbjct 11192 TTACAGATTTGTTCAAGAGGAAGAAACTTAGAATATTATAGCCGCTCATGCTTATTTTGG 11251 Query 170409 TAGACTTATCTTCCAATATGCTAGCTTTAACAA 170441 || | ||||||||||||||||| || || || Sbjct 11252 ACGATTGATCTTCCAATATGCTAGTTTCAAAAA 11284 Score = 120 bits (132), Expect = 4e-22 Identities = 188/269 (70%), Gaps = 0/269 (0%) Strand=Plus/Plus Query 170173 GGTACATTTAACTTCATGTTCGTATTCCAAGCAGAGCACAACATTCTTATGCACCCATTC 170232 ||||| || || ||| || | |||| || || ||||||||||| |||||||||||||| Sbjct 43838 GGTACTTTGAATTTCCTGATTTTATTTCAGGCTGAGCACAACATCCTTATGCACCCATTT 43897 Query 170233 CATATGGCAGGGGTTGCTGGTATGTTCGGAGGAGCACTCTTCTCAGCAATGCACGGTTCA 170292 || || ||| | |||||| | || ||| | || ||| || ||||| ||| Sbjct 43898 CACATCTTAGGCCTAGCTGGTGTAAAAGGTGGATCCCTATTCAGTGCTATGCATAATTCC 43957 Query 170293 CTTGTAACATCTTCTCTAATCAGAGAGACAACAGATAACGAGTCACAGAACTATGGATAC 170352 | ||||| ||| | | || || || | ||| | || || || || | || || Sbjct 43958 TTGGTAACTTCTAGTTTTATTAGGGAAAGCACAAAAAATGAATCTGCTAATGAAGGTTAA 44017 Query 170353 AAATTCGGACAAGAAGAAGAAACATACAACATTGTTGCAGCACATGGATACTTTGGTAGA 170412 | ||| | |||||||||||||| || || ||||| || || |||| || ||||| || Sbjct 44018 ATATTTGTTCAAGAAGAAGAAACTTAGAATATTGTAGCCGCTCATGCTTATTTTGGACGA 44077 Query 170413 CTTATCTTCCAATATGCTAGCTTTAACAA 170441 | ||||| ||||||||||| || ||||| Sbjct 44078 TTGATCTTACAATATGCTAGTTTCAACAA 44106 >seq12053 Length=52445 Score = 118 bits (130), Expect = 1e-21 Identities = 156/217 (72%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 170455 CACTTCTTCCTTGCTACATTCCCTGTAGTATGCATCTGGTTAACTTCAATGGGTATTTGC 170514 ||||||||||| ||| | | ||||||||| | |||||||| | | | ||||| || Sbjct 51477 CACTTCTTCCTAGCTGCTTGGCCTGTAGTACGTATCTGGTTTATCGCTTTAGGTATCAGC 51418 Query 170515 ACAATGGCATTTAACCTTAATGGATTTAACTTCAACCAGTCAATCGTAGATGGATCTGGT 170574 || ||||| || ||||| ||||| || | |||||||| || | || || | ||| Sbjct 51417 ACTATGGCTTTCAACCTAAATGGTTTCAGTTTCAACCAATCTGTAGTTGACAGTCAGGGT 51358 Query 170575 AAAGTAGTTCCTACATGGGCAGACGTTCTTAACAGAGCAAACCTAGGTATGGAAGTAATG 170634 ||| || || ||||| || | | ||| || ||||| ||||||||||| ||| Sbjct 51357 CGTGTAATTAACACTTGGGCTGATATCATCAACCRTGCTAACCTTGGTATGGAAGTTATG 51298 Query 170635 CATGAGCGTAATGCACACAACTTCCCACTTGACTTGG 170671 ||||| |||||||| || |||||||| || |||| || Sbjct 51297 CATGAACGTAATGCTCATAACTTCCCTCTAGACTAGG 51261 >seq94 Length=189492 Score = 107 bits (118), Expect = 2e-18 Identities = 140/191 (73%), Gaps = 2/191 (1%) Strand=Plus/Minus Query 170455 CACTTCTTCCTTGCTACATTCCCTGTAGTATGCATCTGGTTAACTTCAATGGGTATTTGC 170514 |||||||||| ||| | | ||||||||| | |||||||| || | | ||||| || Sbjct 88208 CACTTCTTCCGAGCTGCTTGGCCTGTAGTAGGTATCTGGTTTACCGCTTTAGGTATCAGC 88149 Query 170515 ACAATGGCATTTAACCTTAATGGATTTAACTTCAACCAGTCAATCGTAGATGGATCTG-G 170573 || ||||| || ||||| ||||| || || |||||||| || | || ||| | || | | Sbjct 88148 ACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAG-TCAGTG 88090 Query 170574 TAAAGTAGTTCCTACATGGGCAGACGTTCTTAACAGAGCAAACCTAGGTATGGAAGTAAT 170633 | | ||| || || ||||| || | | ||| | || ||||| ||||||||||| || Sbjct 88089 TCATGTAATTAACACTTGGGCCGATATCATCAACCGTGCTAACCTTGGTATGGAAGTTAT 88030 Query 170634 GCATGAGCGTA 170644 |||||| |||| Sbjct 88029 GCATGAACGTA 88019 >seq8506 Length=47589 Score = 100 bits (110), Expect = 3e-16 Identities = 76/90 (84%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 170142 TTTCTCAGACGGAATGCCTCTAGGTATCTCAGGTACATTTAACTTCATGTTCGTATTCCA 170201 ||| || || || ||||||||||| ||||| ||||| || || |||||| | |||||||| Sbjct 40169 TTTTTCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAATTTCATGATTGTATTCCA 40110 Query 170202 AGCAGAGCACAACATTCTTATGCACCCATT 170231 ||| || |||||||| |||||||||||||| Sbjct 40109 AGCTGAACACAACATCCTTATGCACCCATT 40080 >seq24164 Length=10202 Score = 86.0 bits (94), Expect = 7e-12 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 170129 TCGGTCAGGGATCTTTCTCAGACGGAATGCCTCTAGGTATCTCAGGTACATTTAACTTCA 170188 ||||| | ||| ||| || || | ||||||||||| |||| ||||| || || |||| Sbjct 3440 TCGGTTAAGGAAGTTTTTCTGATGCTATGCCTCTAGGAGTCTCTGGTACTTTCAATTTCA 3499 Query 170189 TGTTCGTATTCCAAGCAGAGCACAACATTCTTATGCACCCATTCCATATG 170238 || | ||||||| || || |||||||| ||||||||| ||| |||||| Sbjct 3500 TGATTATATTCCAGGCTGAACACAACATCCTTATGCACTTATTTCATATG 3549 >seq6413 Length=53986 Score = 82.4 bits (90), Expect = 9e-11 Identities = 141/205 (69%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 170219 TTATGCACCCATTCCATATGGCAGGGGTTGCTGGTATGTTCGGAGGAGCACTCTTCTCAG 170278 ||||||||||||| || || ||| | |||||| | || || | || ||| | Sbjct 29192 TTATGCACCCATTTCACATCTTAGGCCTAGCTGGTGTAAAAGGCGGCTCCCTATTCAGTG 29133 Query 170279 CAATGCACGGTTCACTTGTAACATCTTCTCTAATCAGAGAGACAACAGATAACGAGTCAC 170338 | ||||| | ||| | ||||| ||| | | ||||| || | ||||| || || || Sbjct 29132 CTATGCATGCTTCCTTGGTAACTTCTAGTTTGATCAGGGAAAGCACAGAAAATGAATCTG 29073 Query 170339 AGAACTATGGATACAAATTCGGACAAGAAGAAGAAACATACAACATTGTTGCAGCACATG 170398 || | || |||| |||||| ||||| |||||||| || || || || || || |||| Sbjct 29072 CTAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAACTTAGAATATCGTAGCCGCTCATG 29013 Query 170399 GATACTTTGGTAGACTTATCTTCCA 170423 || ||||| || | |||||||| Sbjct 29012 CTTATTTTGGCCGATTGATCTTCCA 28988 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 582508534753600