Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20arcanum_20[genbank_20GCA_5F000612985.1_202014-03-22] 46,594 sequences; 665,186,956 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq4177 152 6e-32 seq15927 100 3e-16 >seq4177 Length=96264 Score = 152 bits (168), Expect = 6e-32 Identities = 559/872 (64%), Gaps = 5/872 (1%) Strand=Plus/Minus Query 18669 TTTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACA 18728 ||| ||||| || ||||||| || |||||||||||||| || || | ||| || Sbjct 67253 TTTCTGATACTCCCCAACTCTCTTCTCAAAGAAATTAGTCTTCCCTTGTAAACTAATCAG 67194 Query 18729 TTCCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCCTAATTCTAATAG 18788 ||||| ||||||||||||| | |||| || || || | | || || | | Sbjct 67193 CTCCATCCAATCAAATGGATTCTGAGCATTGTACATCTTGTCATAACCCAAAGCATCCAA 67134 Query 18789 TAGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATTCATTCCTATTAA 18848 | ||| || |||||||| | || ||| | |||||| ||| | ||||||||| | | Sbjct 67133 CAATCTGTCAGCTACAAACTCTATGTATTTACTCATCAAATCTCCATTCATTCCCACCAG 67074 Query 18849 TTTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTCTGATATAAT 18908 | ||| || ||||| | || || |||||| | || || |||| | ||| Sbjct 67073 AGCACAAGGAAGAGCATCACACACGAACTCCCTTTCTATCTCCACAGCATCTGCAACAAT 67014 Query 18909 AGATACAACTCTATCTTCA-TTAGGAGGGTATAGAAGATGTTTAAACATCAAACATGCAA 18967 |||| || ||| |||| || || | | || | |||||| |||| Sbjct 67013 TCCCCTGACTCGCTCCTCAGTTAGCTTCGTCCTTAACAAACTGTAA-AGCAAACACGCAA 66955 Query 18968 AATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCA 19027 ||||||| || | || |||||||| || || ||||| || || ||||| ||||||| Sbjct 66954 AATCACAGTGCAAACCTTCGTCTCTTGAAATTAACTCATTTGAGAAGGTTAATCCAGGCA 66895 Query 19028 TCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTT 19087 | | || | |||||| ||||| ||||| ||| || ||| ||||| || |||| Sbjct 66894 TTAACCCCCGTTTTTTCAACCAAAATATCGAACAGAAGCTTCCGCTGAAGAAAATCCCTT 66835 Query 19088 CTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTATGAATCCATT 19147 | || |||||||| || | | || | || | ||| || ||||| Sbjct 66834 CAACACAAGCAAAAGCCACCAAACGCTCCGCGAAAGTT---TCAGACCCATCGATCCAAC 66778 Query 19148 TCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAATAGAT 19207 || ||||| | |||||||||| ||||| || |||||||| || | | || | | Sbjct 66777 GAAGGGCCCATTTCGCCTTCTTTTCAACACAAGGGATTGTCTCAATTGCACGGAACAATT 66718 Query 19208 ACATACGCTCATCTGTATCTTTAACATATGCATCTATCAATAAACTGTACATTTCTGAAT 19267 | || || | ||| || | || | || | || ||||||||||| || |||| Sbjct 66717 TGCTCTTTTCGTCAGAATCCTTGATGTACGACTCCAACAGCAAACTGTACATCTCGGAAT 66658 Query 19268 GAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTACTT 19327 | ||||| || || || || || || || || ||| | || || | | ||| || | Sbjct 66657 GGATATTCTCAATGGCGATTTGGAACCCATAGAAAGCACGAGCCTCGGCAACCTGGACAT 66598 Query 19328 CACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAAAATG 19387 | | || ||| | | | || || |||||| || || || |||||||| | Sbjct 66597 CTTTCATGAACCTTCCAGCGAGGTTCTCTAAAACTATGCCGTCTGAGGCGGCAAAAAAGG 66538 Query 19388 CTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTAATGTATTCCAATCATTAATAT 19447 | | ||||| | || ||||| ||||| | || |||| | | ||| | | | ||| Sbjct 66537 CAAGAACATGAGTGATGAAATGCCTTTCACCGGATGTTAGGTTTTCCCAGTGACGAGTAT 66478 Query 19448 CTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTATACATGT 19507 | | || | ||| |||||||| || ||||| ||||| ||| ||||| || ||||| | Sbjct 66477 CGGTGGAGAGATCGACTTCTTCTACCGTCCAGAAAGATGCCATGGCTTTCTTGTACATCT 66418 Query 19508 TCCATATATCACGATATTGTATAGGAAATATA 19539 ||| || | |||| || || || || ||| Sbjct 66417 CCCAAATCTGTGGATACTGAATTGGGAACATA 66386 >seq15927 Length=13211 Score = 100 bits (110), Expect = 3e-16 Identities = 147/206 (71%), Gaps = 4/206 (2%) Strand=Plus/Plus Query 48359 ACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACC 48418 ||| |||||||| | |||||||||||||| ||| | || | | ||| || ||||| || Sbjct 3711 ACCCCCTTGATCAACATATCTGGCAGTATCATTAAACACACGCAGCATAGGAACAATCCC 3770 Query 48419 ATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGA 48478 ||||||| | || || ||||| ||||||||| ||| |||| | ||| || | || Sbjct 3771 ATTTGATGTTCCGTTTGTTCCACGAATATAACTCCCAGTAGCACGTATGTTGTGCACAGA 3830 Query 48479 AATACCTATACCACCTGCCATTTTAGATATTAGAGCACA--CCGTTTAAGGGTATCATAA 48536 | || || || || || ||| || | |||||| ||| |||| |||||||| Sbjct 3831 CACGCCAATTCCCCCAGCTGATTTGCTAATAACAGCACATTCCG--TAAGAGTATCATAT 3888 Query 48537 ATTCCTTCTATACTATCATCTATCAT 48562 || || || || ||||||||| |||| Sbjct 3889 ATGCCCTCAATGCTATCATCTTTCAT 3914 Score = 100 bits (110), Expect = 3e-16 Identities = 141/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 48599 AGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTT 48658 ||| || | |||||||| |||||||||||||||| | ||||| | || | ||| | Sbjct 4131 AGTGCCAGCATTAAATAGTGTTGGAGATGCATGAGTGAACCAGCGTTGAGACATCAAATG 4190 Query 48659 ATATGTTTCAATAACAGAATCTATATCCCATTGATGTATACCTATAGATACACGCATTAA 48718 |||||| || ||||| || |||||| || || || || | |||||| | ||| | Sbjct 4191 ATATGTCATGATGACAGATTCAATATCCTCTTTGTGGATTCCAACAGATACTCTCATCAG 4250 Query 48719 CATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTCCAA 48778 ||||| ||| || ||||| ||||| || | || || ||||| || || |||| | Sbjct 4251 CATATGTTGTGGCCTTTCCACAATCTTTCCCTGAATCTTTAAAAGGTAAGACCTTTCAAG 4310 Query 48779 TGTTTTAAAACCAAAATA 48796 ||||| |||||||| || Sbjct 4311 GGTTTTGAAACCAAAGTA 4328 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561781413782160